data_1B4S
#
_model_server_result.job_id            ngAJsNvq-_Kh_EqgjW_-Vw 
_model_server_result.datetime_utc      '2024-10-19 01:45:23' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1b4s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":160}' 
#
_entry.id    1B4S 
#
_exptl.entry_id    1B4S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1B4S 
_cell.length_a            70 
_cell.length_b            70 
_cell.length_c            151.77 
_cell.Z_PDB               18 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1B4S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_765 -x+2,-x+y+1,-z+1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 105 60.621778 50.59 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 I N N 
? 4 L N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 F O1B ADP . A ADP 160 1_555 E MG MG . A MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? 
metalc ? metalc2 F O1A ADP . A ADP 160 1_555 E MG MG . A MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc3 D O1 PO4 . A PO4 161 1_555 E MG MG . A MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? 
metalc ? metalc4 I O1B ADP . B ADP 160 1_555 H MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? 
metalc ? metalc5 I O1A ADP . B ADP 160 1_555 H MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.274 ? 
metalc ? metalc6 G O2 PO4 . B PO4 161 1_555 H MG MG . B MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? 
metalc ? metalc7 H MG MG . B MG 162 1_555 N O HOH . B HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? 
metalc ? metalc8 H MG MG . B MG 162 1_555 N O HOH . B HOH 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
metalc ? metalc9 H MG MG . B MG 162 1_555 N O HOH . B HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.845 ? 
metalc ? metalc10 L O1A ADP . C ADP 160 1_555 K MG MG . C MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? 
metalc ? metalc11 L O1B ADP . C ADP 160 1_555 K MG MG . C MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? 
metalc ? metalc12 J O1 PO4 . C PO4 161 1_555 K MG MG . C MG 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     1B4S 
_atom_sites.fract_transf_matrix[1][1]    0.014286 
_atom_sites.fract_transf_matrix[1][2]    0.008248 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016496 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006589 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 PO4 A 1 161 161 PO4 PO4 . 
E 3 MG A 1 162 162 MG MG . 
F 4 ADP A 1 160 160 ADP ADP . 
G 2 PO4 B 1 161 161 PO4 PO4 . 
H 3 MG B 1 162 162 MG MG . 
I 4 ADP B 1 160 160 ADP ADP . 
J 2 PO4 C 1 161 161 PO4 PO4 . 
K 3 MG C 1 162 162 MG MG . 
L 4 ADP C 1 160 160 ADP ADP . 
M 5 HOH A 1 163 1 HOH HOH . 
M 5 HOH A 2 164 5 HOH HOH . 
M 5 HOH A 3 165 6 HOH HOH . 
M 5 HOH A 4 166 7 HOH HOH . 
M 5 HOH A 5 167 10 HOH HOH . 
M 5 HOH A 6 168 12 HOH HOH . 
M 5 HOH A 7 169 19 HOH HOH . 
M 5 HOH A 8 170 23 HOH HOH . 
M 5 HOH A 9 171 24 HOH HOH . 
M 5 HOH A 10 172 29 HOH HOH . 
M 5 HOH A 11 173 31 HOH HOH . 
M 5 HOH A 12 174 33 HOH HOH . 
M 5 HOH A 13 175 37 HOH HOH . 
M 5 HOH A 14 176 39 HOH HOH . 
M 5 HOH A 15 177 45 HOH HOH . 
M 5 HOH A 16 178 48 HOH HOH . 
M 5 HOH A 17 179 49 HOH HOH . 
M 5 HOH A 18 180 50 HOH HOH . 
M 5 HOH A 19 181 51 HOH HOH . 
M 5 HOH A 20 182 66 HOH HOH . 
M 5 HOH A 21 183 67 HOH HOH . 
M 5 HOH A 22 184 68 HOH HOH . 
M 5 HOH A 23 185 70 HOH HOH . 
M 5 HOH A 24 186 71 HOH HOH . 
M 5 HOH A 25 187 75 HOH HOH . 
M 5 HOH A 26 188 78 HOH HOH . 
M 5 HOH A 27 189 81 HOH HOH . 
M 5 HOH A 28 190 86 HOH HOH . 
M 5 HOH A 29 191 87 HOH HOH . 
M 5 HOH A 30 192 90 HOH HOH . 
M 5 HOH A 31 193 94 HOH HOH . 
M 5 HOH A 32 194 96 HOH HOH . 
M 5 HOH A 33 195 100 HOH HOH . 
M 5 HOH A 34 196 101 HOH HOH . 
M 5 HOH A 35 197 105 HOH HOH . 
N 5 HOH B 1 163 3 HOH HOH . 
N 5 HOH B 2 164 4 HOH HOH . 
N 5 HOH B 3 165 8 HOH HOH . 
N 5 HOH B 4 166 13 HOH HOH . 
N 5 HOH B 5 167 16 HOH HOH . 
N 5 HOH B 6 168 17 HOH HOH . 
N 5 HOH B 7 169 18 HOH HOH . 
N 5 HOH B 8 170 21 HOH HOH . 
N 5 HOH B 9 171 25 HOH HOH . 
N 5 HOH B 10 172 30 HOH HOH . 
N 5 HOH B 11 173 34 HOH HOH . 
N 5 HOH B 12 174 35 HOH HOH . 
N 5 HOH B 13 175 40 HOH HOH . 
N 5 HOH B 14 176 41 HOH HOH . 
N 5 HOH B 15 177 43 HOH HOH . 
N 5 HOH B 16 178 44 HOH HOH . 
N 5 HOH B 17 179 46 HOH HOH . 
N 5 HOH B 18 180 47 HOH HOH . 
N 5 HOH B 19 181 52 HOH HOH . 
N 5 HOH B 20 182 62 HOH HOH . 
N 5 HOH B 21 183 63 HOH HOH . 
N 5 HOH B 22 184 65 HOH HOH . 
N 5 HOH B 23 185 69 HOH HOH . 
N 5 HOH B 24 186 73 HOH HOH . 
N 5 HOH B 25 187 77 HOH HOH . 
N 5 HOH B 26 188 80 HOH HOH . 
N 5 HOH B 27 189 84 HOH HOH . 
N 5 HOH B 28 190 85 HOH HOH . 
N 5 HOH B 29 191 88 HOH HOH . 
N 5 HOH B 30 192 89 HOH HOH . 
N 5 HOH B 31 193 91 HOH HOH . 
N 5 HOH B 32 194 97 HOH HOH . 
N 5 HOH B 33 195 99 HOH HOH . 
N 5 HOH B 34 196 103 HOH HOH . 
N 5 HOH B 35 197 104 HOH HOH . 
N 5 HOH B 36 198 107 HOH HOH . 
N 5 HOH B 37 199 110 HOH HOH . 
N 5 HOH B 38 200 114 HOH HOH . 
N 5 HOH B 39 201 116 HOH HOH . 
N 5 HOH B 40 202 119 HOH HOH . 
N 5 HOH B 41 203 102 HOH HOH . 
N 5 HOH B 42 204 108 HOH HOH . 
N 5 HOH B 43 205 111 HOH HOH . 
O 5 HOH C 1 163 2 HOH HOH . 
O 5 HOH C 2 164 9 HOH HOH . 
O 5 HOH C 3 165 11 HOH HOH . 
O 5 HOH C 4 166 20 HOH HOH . 
O 5 HOH C 5 167 22 HOH HOH . 
O 5 HOH C 6 168 27 HOH HOH . 
O 5 HOH C 7 169 28 HOH HOH . 
O 5 HOH C 8 170 32 HOH HOH . 
O 5 HOH C 9 171 36 HOH HOH . 
O 5 HOH C 10 172 38 HOH HOH . 
O 5 HOH C 11 173 53 HOH HOH . 
O 5 HOH C 12 174 60 HOH HOH . 
O 5 HOH C 13 175 61 HOH HOH . 
O 5 HOH C 14 176 64 HOH HOH . 
O 5 HOH C 15 177 72 HOH HOH . 
O 5 HOH C 16 178 74 HOH HOH . 
O 5 HOH C 17 179 76 HOH HOH . 
O 5 HOH C 18 180 79 HOH HOH . 
O 5 HOH C 19 181 82 HOH HOH . 
O 5 HOH C 20 182 83 HOH HOH . 
O 5 HOH C 21 183 92 HOH HOH . 
O 5 HOH C 22 184 93 HOH HOH . 
O 5 HOH C 23 185 95 HOH HOH . 
O 5 HOH C 24 186 98 HOH HOH . 
O 5 HOH C 25 187 106 HOH HOH . 
O 5 HOH C 26 188 109 HOH HOH . 
O 5 HOH C 27 189 113 HOH HOH . 
O 5 HOH C 28 190 115 HOH HOH . 
O 5 HOH C 29 191 117 HOH HOH . 
O 5 HOH C 30 192 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . I 4 35.441 33.928 8.646 1 26.64 ? PB ADP 160 B 1 
HETATM 2 O O1B ADP . . . I 4 35.703 35.281 8.068 1 14.03 ? O1B ADP 160 B 1 
HETATM 3 O O2B ADP . . . I 4 36.103 32.776 7.928 1 25.98 ? O2B ADP 160 B 1 
HETATM 4 O O3B ADP . . . I 4 35.726 33.909 10.096 1 24.01 ? O3B ADP 160 B 1 
HETATM 5 P PA ADP . . . I 4 32.69 34.454 7.771 1 22.2 ? PA ADP 160 B 1 
HETATM 6 O O1A ADP . . . I 4 33.099 35.876 7.688 1 25.42 ? O1A ADP 160 B 1 
HETATM 7 O O2A ADP . . . I 4 32.34 33.665 6.574 1 14.92 ? O2A ADP 160 B 1 
HETATM 8 O O3A ADP . . . I 4 33.853 33.656 8.525 1 29.62 ? O3A ADP 160 B 1 
HETATM 9 O O5' ADP . . . I 4 31.485 34.37 8.833 1 22.54 ? O5' ADP 160 B 1 
HETATM 10 C C5' ADP . . . I 4 31.64 35.123 10.011 1 23.22 ? C5' ADP 160 B 1 
HETATM 11 C C4' ADP . . . I 4 31.613 34.172 11.128 1 26.12 ? C4' ADP 160 B 1 
HETATM 12 O O4' ADP . . . I 4 30.289 33.787 11.203 1 30.37 ? O4' ADP 160 B 1 
HETATM 13 C C3' ADP . . . I 4 32.368 32.853 10.923 1 25.72 ? C3' ADP 160 B 1 
HETATM 14 O O3' ADP . . . I 4 33.717 32.942 11.318 1 19.93 ? O3' ADP 160 B 1 
HETATM 15 C C2' ADP . . . I 4 31.664 31.923 11.856 1 26.57 ? C2' ADP 160 B 1 
HETATM 16 O O2' ADP . . . I 4 31.912 32.099 13.293 1 31.23 ? O2' ADP 160 B 1 
HETATM 17 C C1' ADP . . . I 4 30.323 32.46 11.63 1 26.64 ? C1' ADP 160 B 1 
HETATM 18 N N9 ADP . . . I 4 29.694 31.641 10.703 1 30.95 ? N9 ADP 160 B 1 
HETATM 19 C C8 ADP . . . I 4 29.877 31.507 9.347 1 31.07 ? C8 ADP 160 B 1 
HETATM 20 N N7 ADP . . . I 4 29.328 30.425 8.916 1 29.01 ? N7 ADP 160 B 1 
HETATM 21 C C5 ADP . . . I 4 28.489 29.984 10 1 33.31 ? C5 ADP 160 B 1 
HETATM 22 C C6 ADP . . . I 4 27.45 28.967 10.19 1 34.11 ? C6 ADP 160 B 1 
HETATM 23 N N6 ADP . . . I 4 26.613 28.578 9.191 1 42.65 ? N6 ADP 160 B 1 
HETATM 24 N N1 ADP . . . I 4 27.04 28.679 11.47 1 29.1 ? N1 ADP 160 B 1 
HETATM 25 C C2 ADP . . . I 4 27.35 29.522 12.446 1 25.49 ? C2 ADP 160 B 1 
HETATM 26 N N3 ADP . . . I 4 28.11 30.612 12.356 1 29.43 ? N3 ADP 160 B 1 
HETATM 27 C C4 ADP . . . I 4 28.724 30.746 11.109 1 32.7 ? C4 ADP 160 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           339 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#