data_1B4W # _model_server_result.job_id 8cGV-D4cjQ0b8CAhqDqZxw _model_server_result.datetime_utc '2024-11-22 12:18:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b4w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":300}' # _entry.id 1B4W # _exptl.entry_id 1B4W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 292.369 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'octyl beta-D-glucopyranoside' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.76 _cell.angle_gamma 90 _cell.entry_id 1B4W _cell.length_a 100.453 _cell.length_b 54.294 _cell.length_c 108.388 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B4W _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 26 A CYS 27 1_555 A SG CYS 115 A CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 28 A CYS 29 1_555 A SG CYS 44 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 43 A CYS 44 1_555 A SG CYS 95 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 A SG CYS 49 A CYS 50 1_555 A SG CYS 122 A CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 50 A CYS 51 1_555 A SG CYS 88 A CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 A SG CYS 57 A CYS 61 1_555 A SG CYS 81 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf7 A SG CYS 75 A CYS 84 1_555 A SG CYS 86 A CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf8 B SG CYS 26 B CYS 27 1_555 B SG CYS 115 B CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf9 B SG CYS 28 B CYS 29 1_555 B SG CYS 44 B CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf10 B SG CYS 43 B CYS 44 1_555 B SG CYS 95 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf11 B SG CYS 49 B CYS 50 1_555 B SG CYS 122 B CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf12 B SG CYS 50 B CYS 51 1_555 B SG CYS 88 B CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf13 B SG CYS 57 B CYS 61 1_555 B SG CYS 81 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 B SG CYS 75 B CYS 84 1_555 B SG CYS 86 B CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf15 C SG CYS 26 C CYS 27 1_555 C SG CYS 115 C CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf16 C SG CYS 28 C CYS 29 1_555 C SG CYS 44 C CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf17 C SG CYS 43 C CYS 44 1_555 C SG CYS 95 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf18 C SG CYS 49 C CYS 50 1_555 C SG CYS 122 C CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf19 C SG CYS 50 C CYS 51 1_555 C SG CYS 88 C CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf20 C SG CYS 57 C CYS 61 1_555 C SG CYS 81 C CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf21 C SG CYS 75 C CYS 84 1_555 C SG CYS 86 C CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf22 D SG CYS 26 D CYS 27 1_555 D SG CYS 115 D CYS 126 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf23 D SG CYS 28 D CYS 29 1_555 D SG CYS 44 D CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf24 D SG CYS 43 D CYS 44 1_555 D SG CYS 95 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? disulf ? disulf25 D SG CYS 49 D CYS 50 1_555 D SG CYS 122 D CYS 133 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf26 D SG CYS 50 D CYS 51 1_555 D SG CYS 88 D CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf27 D SG CYS 57 D CYS 61 1_555 D SG CYS 81 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf28 D SG CYS 75 D CYS 84 1_555 D SG CYS 86 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? # _chem_comp.formula 'C14 H28 O6' _chem_comp.formula_weight 292.369 _chem_comp.id BOG _chem_comp.mon_nstd_flag n _chem_comp.name 'octyl beta-D-glucopyranoside' _chem_comp.type d-saccharide _chem_comp.pdbx_synonyms 'Beta-Octylglucoside;octyl beta-D-glucoside;octyl D-glucoside;octyl glucoside' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 BOG sing 70 n n C1 C2 BOG sing 71 n n C1 O5 BOG sing 72 n n C1 H1 BOG sing 73 n n O1 C1' BOG sing 74 n n C2 O2 BOG sing 75 n n C2 C3 BOG sing 76 n n C2 H2 BOG sing 77 n n O2 HO2 BOG sing 78 n n C3 O3 BOG sing 79 n n C3 C4 BOG sing 80 n n C3 H3 BOG sing 81 n n O3 HO3 BOG sing 82 n n C4 O4 BOG sing 83 n n C4 C5 BOG sing 84 n n C4 H4 BOG sing 85 n n O4 HO4 BOG sing 86 n n C5 O5 BOG sing 87 n n C5 C6 BOG sing 88 n n C5 H5 BOG sing 89 n n C6 O6 BOG sing 90 n n C6 H61 BOG sing 91 n n C6 H62 BOG sing 92 n n O6 HO6 BOG sing 93 n n C1' C2' BOG sing 94 n n C1' "H1'1" BOG sing 95 n n C1' "H1'2" BOG sing 96 n n C2' C3' BOG sing 97 n n C2' "H2'1" BOG sing 98 n n C2' "H2'2" BOG sing 99 n n C3' C4' BOG sing 100 n n C3' "H3'1" BOG sing 101 n n C3' "H3'2" BOG sing 102 n n C4' C5' BOG sing 103 n n C4' "H4'1" BOG sing 104 n n C4' "H4'2" BOG sing 105 n n C5' C6' BOG sing 106 n n C5' "H5'1" BOG sing 107 n n C5' "H5'2" BOG sing 108 n n C6' C7' BOG sing 109 n n C6' "H6'1" BOG sing 110 n n C6' "H6'2" BOG sing 111 n n C7' C8' BOG sing 112 n n C7' "H7'1" BOG sing 113 n n C7' "H7'2" BOG sing 114 n n C8' "H8'1" BOG sing 115 n n C8' "H8'2" BOG sing 116 n n C8' "H8'3" BOG sing 117 n n # _pdbx_chem_comp_identifier.comp_id BOG _pdbx_chem_comp_identifier.identifier b-octylglucoside _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 1B4W _atom_sites.fract_transf_matrix[1][1] 0.009955 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003974 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018418 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009934 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BOG A 1 200 200 BOG BOG . F 2 BOG D 1 300 300 BOG BOG . G 3 HOH A 1 201 3 HOH HOH . G 3 HOH A 2 202 12 HOH HOH . G 3 HOH A 3 203 17 HOH HOH . G 3 HOH A 4 204 24 HOH HOH . G 3 HOH A 5 205 25 HOH HOH . G 3 HOH A 6 206 26 HOH HOH . G 3 HOH A 7 207 27 HOH HOH . G 3 HOH A 8 208 29 HOH HOH . G 3 HOH A 9 209 33 HOH HOH . G 3 HOH A 10 210 35 HOH HOH . G 3 HOH A 11 211 41 HOH HOH . G 3 HOH A 12 212 44 HOH HOH . G 3 HOH A 13 213 45 HOH HOH . G 3 HOH A 14 214 48 HOH HOH . G 3 HOH A 15 215 49 HOH HOH . G 3 HOH A 16 216 54 HOH HOH . G 3 HOH A 17 217 55 HOH HOH . G 3 HOH A 18 218 58 HOH HOH . G 3 HOH A 19 219 63 HOH HOH . G 3 HOH A 20 220 65 HOH HOH . G 3 HOH A 21 221 67 HOH HOH . G 3 HOH A 22 222 71 HOH HOH . G 3 HOH A 23 223 72 HOH HOH . G 3 HOH A 24 224 74 HOH HOH . G 3 HOH A 25 225 80 HOH HOH . G 3 HOH A 26 226 81 HOH HOH . G 3 HOH A 27 227 92 HOH HOH . G 3 HOH A 28 228 99 HOH HOH . G 3 HOH A 29 229 101 HOH HOH . G 3 HOH A 30 230 106 HOH HOH . H 3 HOH B 1 134 4 HOH HOH . H 3 HOH B 2 135 6 HOH HOH . H 3 HOH B 3 136 16 HOH HOH . H 3 HOH B 4 137 18 HOH HOH . H 3 HOH B 5 138 19 HOH HOH . H 3 HOH B 6 139 22 HOH HOH . H 3 HOH B 7 140 23 HOH HOH . H 3 HOH B 8 141 28 HOH HOH . H 3 HOH B 9 142 34 HOH HOH . H 3 HOH B 10 143 38 HOH HOH . H 3 HOH B 11 144 40 HOH HOH . H 3 HOH B 12 145 47 HOH HOH . H 3 HOH B 13 146 56 HOH HOH . H 3 HOH B 14 147 66 HOH HOH . H 3 HOH B 15 148 73 HOH HOH . H 3 HOH B 16 149 82 HOH HOH . H 3 HOH B 17 150 93 HOH HOH . H 3 HOH B 18 151 96 HOH HOH . H 3 HOH B 19 152 98 HOH HOH . H 3 HOH B 20 153 100 HOH HOH . I 3 HOH C 1 134 1 HOH HOH . I 3 HOH C 2 135 9 HOH HOH . I 3 HOH C 3 136 11 HOH HOH . I 3 HOH C 4 137 15 HOH HOH . I 3 HOH C 5 138 30 HOH HOH . I 3 HOH C 6 139 31 HOH HOH . I 3 HOH C 7 140 39 HOH HOH . I 3 HOH C 8 141 46 HOH HOH . I 3 HOH C 9 142 50 HOH HOH . I 3 HOH C 10 143 51 HOH HOH . I 3 HOH C 11 144 57 HOH HOH . I 3 HOH C 12 145 59 HOH HOH . I 3 HOH C 13 146 61 HOH HOH . I 3 HOH C 14 147 68 HOH HOH . I 3 HOH C 15 148 69 HOH HOH . I 3 HOH C 16 149 76 HOH HOH . I 3 HOH C 17 150 77 HOH HOH . I 3 HOH C 18 151 83 HOH HOH . I 3 HOH C 19 152 84 HOH HOH . I 3 HOH C 20 153 85 HOH HOH . I 3 HOH C 21 154 86 HOH HOH . I 3 HOH C 22 155 88 HOH HOH . I 3 HOH C 23 156 94 HOH HOH . I 3 HOH C 24 157 95 HOH HOH . I 3 HOH C 25 158 97 HOH HOH . I 3 HOH C 26 159 102 HOH HOH . I 3 HOH C 27 160 103 HOH HOH . I 3 HOH C 28 161 104 HOH HOH . I 3 HOH C 29 162 105 HOH HOH . J 3 HOH D 1 301 2 HOH HOH . J 3 HOH D 2 302 5 HOH HOH . J 3 HOH D 3 303 7 HOH HOH . J 3 HOH D 4 304 8 HOH HOH . J 3 HOH D 5 305 10 HOH HOH . J 3 HOH D 6 306 13 HOH HOH . J 3 HOH D 7 307 14 HOH HOH . J 3 HOH D 8 308 20 HOH HOH . J 3 HOH D 9 309 21 HOH HOH . J 3 HOH D 10 310 32 HOH HOH . J 3 HOH D 11 311 36 HOH HOH . J 3 HOH D 12 312 37 HOH HOH . J 3 HOH D 13 313 42 HOH HOH . J 3 HOH D 14 314 43 HOH HOH . J 3 HOH D 15 315 52 HOH HOH . J 3 HOH D 16 316 53 HOH HOH . J 3 HOH D 17 317 60 HOH HOH . J 3 HOH D 18 318 62 HOH HOH . J 3 HOH D 19 319 64 HOH HOH . J 3 HOH D 20 320 70 HOH HOH . J 3 HOH D 21 321 75 HOH HOH . J 3 HOH D 22 322 78 HOH HOH . J 3 HOH D 23 323 79 HOH HOH . J 3 HOH D 24 324 87 HOH HOH . J 3 HOH D 25 325 89 HOH HOH . J 3 HOH D 26 326 90 HOH HOH . J 3 HOH D 27 327 91 HOH HOH . J 3 HOH D 28 328 107 HOH HOH . J 3 HOH D 29 329 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BOG . . . F 2 29.017 3.425 28.798 1 40.36 ? C1 BOG 300 D 1 HETATM 2 O O1 BOG . . . F 2 28.494 3.013 30.023 1 40.42 ? O1 BOG 300 D 1 HETATM 3 C C2 BOG . . . F 2 28.305 4.723 28.348 1 41.61 ? C2 BOG 300 D 1 HETATM 4 O O2 BOG . . . F 2 27.1 4.338 27.699 1 30.59 ? O2 BOG 300 D 1 HETATM 5 C C3 BOG . . . F 2 29.106 5.646 27.388 1 43.05 ? C3 BOG 300 D 1 HETATM 6 O O3 BOG . . . F 2 28.75 7.001 27.645 1 45.24 ? O3 BOG 300 D 1 HETATM 7 C C4 BOG . . . F 2 30.643 5.525 27.469 1 41.84 ? C4 BOG 300 D 1 HETATM 8 O O4 BOG . . . F 2 31.227 5.947 26.249 1 45.55 ? O4 BOG 300 D 1 HETATM 9 C C5 BOG . . . F 2 31.021 4.082 27.734 1 40.88 ? C5 BOG 300 D 1 HETATM 10 O O5 BOG . . . F 2 30.414 3.646 28.958 1 39.03 ? O5 BOG 300 D 1 HETATM 11 C C6 BOG . . . F 2 32.499 3.764 27.839 1 41.02 ? C6 BOG 300 D 1 HETATM 12 O O6 BOG . . . F 2 32.726 2.355 28.01 1 42.72 ? O6 BOG 300 D 1 HETATM 13 C C1' BOG . . . F 2 28.645 1.629 30.366 1 35.02 ? C1' BOG 300 D 1 HETATM 14 C C2' BOG . . . F 2 28.84 1.519 31.877 1 28.73 ? C2' BOG 300 D 1 HETATM 15 C C3' BOG . . . F 2 30.077 2.33 32.272 1 27.05 ? C3' BOG 300 D 1 HETATM 16 C C4' BOG . . . F 2 30.693 1.776 33.541 1 24.17 ? C4' BOG 300 D 1 HETATM 17 C C5' BOG . . . F 2 31.89 2.637 33.944 1 31.97 ? C5' BOG 300 D 1 HETATM 18 C C6' BOG . . . F 2 33.206 2.162 33.324 1 26.59 ? C6' BOG 300 D 1 HETATM 19 C C7' BOG . . . F 2 34.363 2.973 33.936 1 27.64 ? C7' BOG 300 D 1 HETATM 20 C C8' BOG . . . F 2 35.744 2.395 33.629 1 28.16 ? C8' BOG 300 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 434 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 20 #