data_1B4X # _model_server_result.job_id hiVujxTad9B1RQt7ZVhIvQ _model_server_result.datetime_utc '2025-02-05 16:02:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":458}' # _entry.id 1B4X # _exptl.entry_id 1B4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B4X _cell.length_a 157.13 _cell.length_b 86.69 _cell.length_c 79.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 246 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 258 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 458 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.367 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1B4X _atom_sites.fract_transf_matrix[1][1] 0.006364 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011535 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01252 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 458 458 PLP PLP . C 3 MAE A 1 410 410 MAE MAE . D 4 HOH A 1 702 702 HOH HOH . D 4 HOH A 2 703 703 HOH HOH . D 4 HOH A 3 704 704 HOH HOH . D 4 HOH A 4 705 705 HOH HOH . D 4 HOH A 5 706 706 HOH HOH . D 4 HOH A 6 708 708 HOH HOH . D 4 HOH A 7 709 709 HOH HOH . D 4 HOH A 8 710 710 HOH HOH . D 4 HOH A 9 712 712 HOH HOH . D 4 HOH A 10 715 715 HOH HOH . D 4 HOH A 11 718 718 HOH HOH . D 4 HOH A 12 719 719 HOH HOH . D 4 HOH A 13 720 720 HOH HOH . D 4 HOH A 14 722 722 HOH HOH . D 4 HOH A 15 724 724 HOH HOH . D 4 HOH A 16 725 725 HOH HOH . D 4 HOH A 17 731 731 HOH HOH . D 4 HOH A 18 736 736 HOH HOH . D 4 HOH A 19 737 737 HOH HOH . D 4 HOH A 20 760 760 HOH HOH . D 4 HOH A 21 762 762 HOH HOH . D 4 HOH A 22 764 764 HOH HOH . D 4 HOH A 23 767 767 HOH HOH . D 4 HOH A 24 770 770 HOH HOH . D 4 HOH A 25 772 772 HOH HOH . D 4 HOH A 26 778 778 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 26.735 -5.177 15.155 1 27.97 ? N1 PLP 458 A 1 HETATM 2 C C2 PLP . . . B 2 26.247 -6.267 15.776 1 31.71 ? C2 PLP 458 A 1 HETATM 3 C C2A PLP . . . B 2 26.893 -6.748 17.11 1 38.27 ? C2A PLP 458 A 1 HETATM 4 C C3 PLP . . . B 2 25.16 -6.871 15.266 1 34.36 ? C3 PLP 458 A 1 HETATM 5 O O3 PLP . . . B 2 24.648 -7.981 15.884 1 40.76 ? O3 PLP 458 A 1 HETATM 6 C C4 PLP . . . B 2 24.58 -6.419 14.092 1 38.77 ? C4 PLP 458 A 1 HETATM 7 C C4A PLP . . . B 2 23.341 -7.172 13.564 1 45.29 ? C4A PLP 458 A 1 HETATM 8 C C5 PLP . . . B 2 25.107 -5.289 13.471 1 30.74 ? C5 PLP 458 A 1 HETATM 9 C C6 PLP . . . B 2 26.199 -4.702 14.009 1 32.65 ? C6 PLP 458 A 1 HETATM 10 C C5A PLP . . . B 2 24.552 -4.673 12.161 1 29.04 ? C5A PLP 458 A 1 HETATM 11 O O4P PLP . . . B 2 23.658 -5.376 11.308 1 24.73 ? O4P PLP 458 A 1 HETATM 12 P P PLP . . . B 2 23.049 -4.672 10.02 1 15.51 ? P PLP 458 A 1 HETATM 13 O O1P PLP . . . B 2 22.444 -3.495 10.575 1 17.86 ? O1P PLP 458 A 1 HETATM 14 O O2P PLP . . . B 2 22.035 -5.817 9.58 1 13.78 ? O2P PLP 458 A 1 HETATM 15 O O3P PLP . . . B 2 24.024 -4.547 8.965 1 25.37 ? O3P PLP 458 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 15 #