data_1B54 # _model_server_result.job_id VacI67B-rkguvYxBLg-YQA _model_server_result.datetime_utc '2024-11-08 16:04:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b54 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":258}' # _entry.id 1B54 # _exptl.entry_id 1B54 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 247.142 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "PYRIDOXAL-5'-PHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B54 _cell.length_a 48.58 _cell.length_b 65.71 _cell.length_c 91.94 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B54 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 49 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 49 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C4A _struct_conn.ptnr2_label_comp_id PLP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id PLP _struct_conn.ptnr2_auth_seq_id 258 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.379 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C8 H10 N O6 P' _chem_comp.formula_weight 247.142 _chem_comp.id PLP _chem_comp.mon_nstd_flag . _chem_comp.name "PYRIDOXAL-5'-PHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'VITAMIN B6 Phosphate' # _atom_sites.entry_id 1B54 _atom_sites.fract_transf_matrix[1][1] 0.020585 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015218 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010877 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLP A 1 258 258 PLP PLP . C 3 HOH A 1 259 259 HOH HOH . C 3 HOH A 2 260 260 HOH HOH . C 3 HOH A 3 261 261 HOH HOH . C 3 HOH A 4 262 262 HOH HOH . C 3 HOH A 5 263 263 HOH HOH . C 3 HOH A 6 264 264 HOH HOH . C 3 HOH A 7 265 265 HOH HOH . C 3 HOH A 8 266 266 HOH HOH . C 3 HOH A 9 267 267 HOH HOH . C 3 HOH A 10 268 268 HOH HOH . C 3 HOH A 11 269 269 HOH HOH . C 3 HOH A 12 270 270 HOH HOH . C 3 HOH A 13 271 271 HOH HOH . C 3 HOH A 14 272 272 HOH HOH . C 3 HOH A 15 273 273 HOH HOH . C 3 HOH A 16 274 274 HOH HOH . C 3 HOH A 17 275 275 HOH HOH . C 3 HOH A 18 276 276 HOH HOH . C 3 HOH A 19 277 277 HOH HOH . C 3 HOH A 20 278 278 HOH HOH . C 3 HOH A 21 279 279 HOH HOH . C 3 HOH A 22 280 280 HOH HOH . C 3 HOH A 23 281 281 HOH HOH . C 3 HOH A 24 282 282 HOH HOH . C 3 HOH A 25 283 283 HOH HOH . C 3 HOH A 26 284 284 HOH HOH . C 3 HOH A 27 285 285 HOH HOH . C 3 HOH A 28 286 286 HOH HOH . C 3 HOH A 29 287 287 HOH HOH . C 3 HOH A 30 288 288 HOH HOH . C 3 HOH A 31 289 289 HOH HOH . C 3 HOH A 32 290 290 HOH HOH . C 3 HOH A 33 291 291 HOH HOH . C 3 HOH A 34 292 292 HOH HOH . C 3 HOH A 35 293 293 HOH HOH . C 3 HOH A 36 294 294 HOH HOH . C 3 HOH A 37 295 295 HOH HOH . C 3 HOH A 38 296 296 HOH HOH . C 3 HOH A 39 297 297 HOH HOH . C 3 HOH A 40 298 298 HOH HOH . C 3 HOH A 41 299 299 HOH HOH . C 3 HOH A 42 300 300 HOH HOH . C 3 HOH A 43 301 301 HOH HOH . C 3 HOH A 44 302 302 HOH HOH . C 3 HOH A 45 303 303 HOH HOH . C 3 HOH A 46 304 304 HOH HOH . C 3 HOH A 47 305 305 HOH HOH . C 3 HOH A 48 306 306 HOH HOH . C 3 HOH A 49 307 307 HOH HOH . C 3 HOH A 50 308 308 HOH HOH . C 3 HOH A 51 309 309 HOH HOH . C 3 HOH A 52 310 310 HOH HOH . C 3 HOH A 53 311 311 HOH HOH . C 3 HOH A 54 312 312 HOH HOH . C 3 HOH A 55 313 313 HOH HOH . C 3 HOH A 56 314 314 HOH HOH . C 3 HOH A 57 315 315 HOH HOH . C 3 HOH A 58 316 316 HOH HOH . C 3 HOH A 59 317 317 HOH HOH . C 3 HOH A 60 318 318 HOH HOH . C 3 HOH A 61 319 319 HOH HOH . C 3 HOH A 62 320 320 HOH HOH . C 3 HOH A 63 321 321 HOH HOH . C 3 HOH A 64 322 322 HOH HOH . C 3 HOH A 65 323 323 HOH HOH . C 3 HOH A 66 324 324 HOH HOH . C 3 HOH A 67 325 325 HOH HOH . C 3 HOH A 68 326 326 HOH HOH . C 3 HOH A 69 327 327 HOH HOH . C 3 HOH A 70 328 328 HOH HOH . C 3 HOH A 71 329 329 HOH HOH . C 3 HOH A 72 330 330 HOH HOH . C 3 HOH A 73 331 331 HOH HOH . C 3 HOH A 74 332 332 HOH HOH . C 3 HOH A 75 333 333 HOH HOH . C 3 HOH A 76 334 334 HOH HOH . C 3 HOH A 77 335 335 HOH HOH . C 3 HOH A 78 336 336 HOH HOH . C 3 HOH A 79 337 337 HOH HOH . C 3 HOH A 80 338 338 HOH HOH . C 3 HOH A 81 339 339 HOH HOH . C 3 HOH A 82 340 340 HOH HOH . C 3 HOH A 83 341 341 HOH HOH . C 3 HOH A 84 342 342 HOH HOH . C 3 HOH A 85 343 343 HOH HOH . C 3 HOH A 86 344 344 HOH HOH . C 3 HOH A 87 345 345 HOH HOH . C 3 HOH A 88 346 346 HOH HOH . C 3 HOH A 89 347 347 HOH HOH . C 3 HOH A 90 348 348 HOH HOH . C 3 HOH A 91 349 349 HOH HOH . C 3 HOH A 92 350 350 HOH HOH . C 3 HOH A 93 351 351 HOH HOH . C 3 HOH A 94 352 352 HOH HOH . C 3 HOH A 95 353 353 HOH HOH . C 3 HOH A 96 354 354 HOH HOH . C 3 HOH A 97 355 355 HOH HOH . C 3 HOH A 98 356 356 HOH HOH . C 3 HOH A 99 357 357 HOH HOH . C 3 HOH A 100 358 358 HOH HOH . C 3 HOH A 101 359 359 HOH HOH . C 3 HOH A 102 360 360 HOH HOH . C 3 HOH A 103 361 361 HOH HOH . C 3 HOH A 104 362 362 HOH HOH . C 3 HOH A 105 363 363 HOH HOH . C 3 HOH A 106 364 364 HOH HOH . C 3 HOH A 107 365 365 HOH HOH . C 3 HOH A 108 366 366 HOH HOH . C 3 HOH A 109 367 367 HOH HOH . C 3 HOH A 110 368 368 HOH HOH . C 3 HOH A 111 369 369 HOH HOH . C 3 HOH A 112 370 370 HOH HOH . C 3 HOH A 113 371 371 HOH HOH . C 3 HOH A 114 372 372 HOH HOH . C 3 HOH A 115 373 373 HOH HOH . C 3 HOH A 116 374 374 HOH HOH . C 3 HOH A 117 375 375 HOH HOH . C 3 HOH A 118 376 376 HOH HOH . C 3 HOH A 119 377 377 HOH HOH . C 3 HOH A 120 378 378 HOH HOH . C 3 HOH A 121 379 379 HOH HOH . C 3 HOH A 122 380 380 HOH HOH . C 3 HOH A 123 381 381 HOH HOH . C 3 HOH A 124 382 382 HOH HOH . C 3 HOH A 125 383 383 HOH HOH . C 3 HOH A 126 384 384 HOH HOH . C 3 HOH A 127 385 385 HOH HOH . C 3 HOH A 128 386 386 HOH HOH . C 3 HOH A 129 387 387 HOH HOH . C 3 HOH A 130 388 388 HOH HOH . C 3 HOH A 131 389 389 HOH HOH . C 3 HOH A 132 390 390 HOH HOH . C 3 HOH A 133 391 391 HOH HOH . C 3 HOH A 134 392 392 HOH HOH . C 3 HOH A 135 393 393 HOH HOH . C 3 HOH A 136 394 394 HOH HOH . C 3 HOH A 137 395 395 HOH HOH . C 3 HOH A 138 396 396 HOH HOH . C 3 HOH A 139 397 397 HOH HOH . C 3 HOH A 140 398 398 HOH HOH . C 3 HOH A 141 399 399 HOH HOH . C 3 HOH A 142 400 400 HOH HOH . C 3 HOH A 143 401 401 HOH HOH . C 3 HOH A 144 402 402 HOH HOH . C 3 HOH A 145 403 403 HOH HOH . C 3 HOH A 146 404 404 HOH HOH . C 3 HOH A 147 405 405 HOH HOH . C 3 HOH A 148 406 406 HOH HOH . C 3 HOH A 149 407 407 HOH HOH . C 3 HOH A 150 408 408 HOH HOH . C 3 HOH A 151 409 409 HOH HOH . C 3 HOH A 152 410 410 HOH HOH . C 3 HOH A 153 411 411 HOH HOH . C 3 HOH A 154 412 412 HOH HOH . C 3 HOH A 155 413 413 HOH HOH . C 3 HOH A 156 414 414 HOH HOH . C 3 HOH A 157 415 415 HOH HOH . C 3 HOH A 158 416 416 HOH HOH . C 3 HOH A 159 417 417 HOH HOH . C 3 HOH A 160 418 418 HOH HOH . C 3 HOH A 161 419 419 HOH HOH . C 3 HOH A 162 420 420 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 PLP . . . B 2 18.958 25.539 16.669 1 33.6 ? N1 PLP 258 A 1 HETATM 2 C C2 PLP . . . B 2 20.011 25.098 17.458 1 38.47 ? C2 PLP 258 A 1 HETATM 3 C C2A PLP . . . B 2 20.646 26.071 18.5 1 34.23 ? C2A PLP 258 A 1 HETATM 4 C C3 PLP . . . B 2 20.467 23.773 17.318 1 38.96 ? C3 PLP 258 A 1 HETATM 5 O O3 PLP . . . B 2 21.394 23.278 18.23 1 39.83 ? O3 PLP 258 A 1 HETATM 6 C C4 PLP . . . B 2 19.868 22.902 16.372 1 36.04 ? C4 PLP 258 A 1 HETATM 7 C C4A PLP . . . B 2 20.591 21.54 16.017 1 38.22 ? C4A PLP 258 A 1 HETATM 8 C C5 PLP . . . B 2 18.744 23.358 15.63 1 35.71 ? C5 PLP 258 A 1 HETATM 9 C C6 PLP . . . B 2 18.351 24.663 15.783 1 37.03 ? C6 PLP 258 A 1 HETATM 10 C C5A PLP . . . B 2 17.792 22.427 14.757 1 28.94 ? C5A PLP 258 A 1 HETATM 11 O O4P PLP . . . B 2 16.854 21.377 15.224 1 32.51 ? O4P PLP 258 A 1 HETATM 12 P P PLP . . . B 2 16.473 20.165 14.132 1 27.71 ? P PLP 258 A 1 HETATM 13 O O1P PLP . . . B 2 15.699 20.785 13.04 1 36.08 ? O1P PLP 258 A 1 HETATM 14 O O2P PLP . . . B 2 15.553 19.001 14.699 1 30.61 ? O2P PLP 258 A 1 HETATM 15 O O3P PLP . . . B 2 17.767 19.517 13.809 1 35.9 ? O3P PLP 258 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 5 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #