data_1B5O # _model_server_result.job_id GFChtA2UlVSeCcq9dzAA1Q _model_server_result.datetime_utc '2024-11-28 15:35:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b5o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":414}' # _entry.id 1B5O # _exptl.entry_id 1B5O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B5O _cell.length_a 61.84 _cell.length_b 114.63 _cell.length_c 124.98 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B5O _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 234 A LYS 234 1_555 D C4A PLP . A PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.365 ? covale ? covale2 B NZ LYS 234 B LYS 234 1_555 F C4A PLP . B PLP 413 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.368 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 286 n n P O2 PO4 sing 287 n n P O3 PO4 sing 288 n n P O4 PO4 sing 289 n n # _atom_sites.entry_id 1B5O _atom_sites.fract_transf_matrix[1][1] 0.016171 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008724 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008001 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 PO4 A 1 414 414 PO4 PO4 . D 3 PLP A 1 413 413 PLP PLP . E 2 PO4 B 1 414 414 PO4 PO4 . F 3 PLP B 1 413 413 PLP PLP . G 4 HOH A 1 501 501 HOH HOH . G 4 HOH A 2 502 502 HOH HOH . G 4 HOH A 3 503 503 HOH HOH . G 4 HOH A 4 504 504 HOH HOH . G 4 HOH A 5 505 505 HOH HOH . G 4 HOH A 6 506 506 HOH HOH . G 4 HOH A 7 507 507 HOH HOH . G 4 HOH A 8 508 508 HOH HOH . G 4 HOH A 9 509 509 HOH HOH . G 4 HOH A 10 510 510 HOH HOH . G 4 HOH A 11 511 511 HOH HOH . G 4 HOH A 12 512 512 HOH HOH . G 4 HOH A 13 513 513 HOH HOH . G 4 HOH A 14 514 514 HOH HOH . G 4 HOH A 15 515 515 HOH HOH . G 4 HOH A 16 516 516 HOH HOH . G 4 HOH A 17 517 517 HOH HOH . G 4 HOH A 18 518 518 HOH HOH . G 4 HOH A 19 519 519 HOH HOH . G 4 HOH A 20 520 520 HOH HOH . G 4 HOH A 21 521 521 HOH HOH . G 4 HOH A 22 522 522 HOH HOH . G 4 HOH A 23 523 523 HOH HOH . G 4 HOH A 24 524 524 HOH HOH . G 4 HOH A 25 525 525 HOH HOH . G 4 HOH A 26 526 526 HOH HOH . G 4 HOH A 27 527 527 HOH HOH . G 4 HOH A 28 528 528 HOH HOH . G 4 HOH A 29 529 529 HOH HOH . G 4 HOH A 30 530 530 HOH HOH . G 4 HOH A 31 531 531 HOH HOH . G 4 HOH A 32 532 532 HOH HOH . G 4 HOH A 33 533 533 HOH HOH . G 4 HOH A 34 534 534 HOH HOH . G 4 HOH A 35 535 535 HOH HOH . G 4 HOH A 36 536 536 HOH HOH . G 4 HOH A 37 537 537 HOH HOH . G 4 HOH A 38 538 538 HOH HOH . G 4 HOH A 39 539 539 HOH HOH . G 4 HOH A 40 540 540 HOH HOH . G 4 HOH A 41 541 541 HOH HOH . G 4 HOH A 42 542 542 HOH HOH . G 4 HOH A 43 543 543 HOH HOH . G 4 HOH A 44 544 544 HOH HOH . G 4 HOH A 45 545 545 HOH HOH . G 4 HOH A 46 546 546 HOH HOH . G 4 HOH A 47 547 547 HOH HOH . G 4 HOH A 48 548 548 HOH HOH . G 4 HOH A 49 549 549 HOH HOH . G 4 HOH A 50 550 550 HOH HOH . G 4 HOH A 51 551 551 HOH HOH . G 4 HOH A 52 552 552 HOH HOH . G 4 HOH A 53 553 553 HOH HOH . G 4 HOH A 54 554 554 HOH HOH . G 4 HOH A 55 555 555 HOH HOH . G 4 HOH A 56 556 556 HOH HOH . G 4 HOH A 57 557 557 HOH HOH . G 4 HOH A 58 558 558 HOH HOH . G 4 HOH A 59 559 559 HOH HOH . G 4 HOH A 60 560 560 HOH HOH . G 4 HOH A 61 561 561 HOH HOH . G 4 HOH A 62 562 562 HOH HOH . G 4 HOH A 63 563 563 HOH HOH . G 4 HOH A 64 564 564 HOH HOH . G 4 HOH A 65 565 565 HOH HOH . G 4 HOH A 66 566 566 HOH HOH . G 4 HOH A 67 567 567 HOH HOH . G 4 HOH A 68 568 568 HOH HOH . G 4 HOH A 69 569 569 HOH HOH . G 4 HOH A 70 570 570 HOH HOH . G 4 HOH A 71 571 571 HOH HOH . G 4 HOH A 72 572 572 HOH HOH . G 4 HOH A 73 573 573 HOH HOH . G 4 HOH A 74 574 574 HOH HOH . G 4 HOH A 75 575 575 HOH HOH . G 4 HOH A 76 576 576 HOH HOH . G 4 HOH A 77 577 577 HOH HOH . G 4 HOH A 78 578 578 HOH HOH . G 4 HOH A 79 579 579 HOH HOH . G 4 HOH A 80 580 580 HOH HOH . G 4 HOH A 81 581 581 HOH HOH . G 4 HOH A 82 582 582 HOH HOH . G 4 HOH A 83 583 583 HOH HOH . G 4 HOH A 84 584 584 HOH HOH . G 4 HOH A 85 585 585 HOH HOH . G 4 HOH A 86 586 586 HOH HOH . G 4 HOH A 87 587 587 HOH HOH . G 4 HOH A 88 588 588 HOH HOH . G 4 HOH A 89 589 589 HOH HOH . G 4 HOH A 90 590 590 HOH HOH . G 4 HOH A 91 591 591 HOH HOH . G 4 HOH A 92 592 592 HOH HOH . G 4 HOH A 93 593 593 HOH HOH . G 4 HOH A 94 594 594 HOH HOH . G 4 HOH A 95 595 595 HOH HOH . G 4 HOH A 96 596 596 HOH HOH . G 4 HOH A 97 597 597 HOH HOH . G 4 HOH A 98 598 598 HOH HOH . G 4 HOH A 99 599 599 HOH HOH . G 4 HOH A 100 600 600 HOH HOH . G 4 HOH A 101 601 601 HOH HOH . G 4 HOH A 102 602 602 HOH HOH . G 4 HOH A 103 603 603 HOH HOH . G 4 HOH A 104 604 604 HOH HOH . G 4 HOH A 105 605 605 HOH HOH . G 4 HOH A 106 606 606 HOH HOH . G 4 HOH A 107 607 607 HOH HOH . G 4 HOH A 108 608 608 HOH HOH . G 4 HOH A 109 609 609 HOH HOH . G 4 HOH A 110 610 610 HOH HOH . G 4 HOH A 111 611 611 HOH HOH . G 4 HOH A 112 612 612 HOH HOH . G 4 HOH A 113 613 613 HOH HOH . G 4 HOH A 114 614 614 HOH HOH . G 4 HOH A 115 615 615 HOH HOH . G 4 HOH A 116 616 616 HOH HOH . G 4 HOH A 117 617 617 HOH HOH . G 4 HOH A 118 618 618 HOH HOH . G 4 HOH A 119 619 619 HOH HOH . G 4 HOH A 120 620 620 HOH HOH . G 4 HOH A 121 621 621 HOH HOH . H 4 HOH B 1 1501 501 HOH HOH . H 4 HOH B 2 1502 502 HOH HOH . H 4 HOH B 3 1503 503 HOH HOH . H 4 HOH B 4 1504 504 HOH HOH . H 4 HOH B 5 1505 505 HOH HOH . H 4 HOH B 6 1506 506 HOH HOH . H 4 HOH B 7 1507 507 HOH HOH . H 4 HOH B 8 1508 508 HOH HOH . H 4 HOH B 9 1509 509 HOH HOH . H 4 HOH B 10 1510 510 HOH HOH . H 4 HOH B 11 1511 511 HOH HOH . H 4 HOH B 12 1512 512 HOH HOH . H 4 HOH B 13 1513 513 HOH HOH . H 4 HOH B 14 1514 514 HOH HOH . H 4 HOH B 15 1515 515 HOH HOH . H 4 HOH B 16 1516 516 HOH HOH . H 4 HOH B 17 1517 517 HOH HOH . H 4 HOH B 18 1518 518 HOH HOH . H 4 HOH B 19 1519 519 HOH HOH . H 4 HOH B 20 1520 520 HOH HOH . H 4 HOH B 21 1521 521 HOH HOH . H 4 HOH B 22 1522 522 HOH HOH . H 4 HOH B 23 1523 523 HOH HOH . H 4 HOH B 24 1524 524 HOH HOH . H 4 HOH B 25 1525 525 HOH HOH . H 4 HOH B 26 1526 526 HOH HOH . H 4 HOH B 27 1527 527 HOH HOH . H 4 HOH B 28 1528 528 HOH HOH . H 4 HOH B 29 1529 529 HOH HOH . H 4 HOH B 30 1530 530 HOH HOH . H 4 HOH B 31 1531 531 HOH HOH . H 4 HOH B 32 1532 532 HOH HOH . H 4 HOH B 33 1533 533 HOH HOH . H 4 HOH B 34 1534 534 HOH HOH . H 4 HOH B 35 1535 535 HOH HOH . H 4 HOH B 36 1536 536 HOH HOH . H 4 HOH B 37 1537 537 HOH HOH . H 4 HOH B 38 1538 538 HOH HOH . H 4 HOH B 39 1539 539 HOH HOH . H 4 HOH B 40 1540 540 HOH HOH . H 4 HOH B 41 1541 541 HOH HOH . H 4 HOH B 42 1542 542 HOH HOH . H 4 HOH B 43 1543 543 HOH HOH . H 4 HOH B 44 1544 544 HOH HOH . H 4 HOH B 45 1545 545 HOH HOH . H 4 HOH B 46 1546 546 HOH HOH . H 4 HOH B 47 1547 547 HOH HOH . H 4 HOH B 48 1548 548 HOH HOH . H 4 HOH B 49 1549 549 HOH HOH . H 4 HOH B 50 1550 550 HOH HOH . H 4 HOH B 51 1551 551 HOH HOH . H 4 HOH B 52 1552 552 HOH HOH . H 4 HOH B 53 1553 553 HOH HOH . H 4 HOH B 54 1554 554 HOH HOH . H 4 HOH B 55 1555 555 HOH HOH . H 4 HOH B 56 1556 556 HOH HOH . H 4 HOH B 57 1557 557 HOH HOH . H 4 HOH B 58 1558 558 HOH HOH . H 4 HOH B 59 1559 559 HOH HOH . H 4 HOH B 60 1560 560 HOH HOH . H 4 HOH B 61 1561 561 HOH HOH . H 4 HOH B 62 1562 562 HOH HOH . H 4 HOH B 63 1563 563 HOH HOH . H 4 HOH B 64 1564 564 HOH HOH . H 4 HOH B 65 1565 565 HOH HOH . H 4 HOH B 66 1566 566 HOH HOH . H 4 HOH B 67 1567 567 HOH HOH . H 4 HOH B 68 1568 568 HOH HOH . H 4 HOH B 69 1569 569 HOH HOH . H 4 HOH B 70 1570 570 HOH HOH . H 4 HOH B 71 1571 571 HOH HOH . H 4 HOH B 72 1572 572 HOH HOH . H 4 HOH B 73 1573 573 HOH HOH . H 4 HOH B 74 1574 574 HOH HOH . H 4 HOH B 75 1575 575 HOH HOH . H 4 HOH B 76 1576 576 HOH HOH . H 4 HOH B 77 1577 577 HOH HOH . H 4 HOH B 78 1578 578 HOH HOH . H 4 HOH B 79 1579 579 HOH HOH . H 4 HOH B 80 1580 580 HOH HOH . H 4 HOH B 81 1581 581 HOH HOH . H 4 HOH B 82 1582 582 HOH HOH . H 4 HOH B 83 1583 583 HOH HOH . H 4 HOH B 84 1584 584 HOH HOH . H 4 HOH B 85 1585 585 HOH HOH . H 4 HOH B 86 1586 586 HOH HOH . H 4 HOH B 87 1587 587 HOH HOH . H 4 HOH B 88 1588 588 HOH HOH . H 4 HOH B 89 1589 589 HOH HOH . H 4 HOH B 90 1590 590 HOH HOH . H 4 HOH B 91 1591 591 HOH HOH . H 4 HOH B 92 1592 592 HOH HOH . H 4 HOH B 93 1593 593 HOH HOH . H 4 HOH B 94 1594 594 HOH HOH . H 4 HOH B 95 1595 595 HOH HOH . H 4 HOH B 96 1596 596 HOH HOH . H 4 HOH B 97 1597 597 HOH HOH . H 4 HOH B 98 1598 598 HOH HOH . H 4 HOH B 99 1599 599 HOH HOH . H 4 HOH B 100 1600 600 HOH HOH . H 4 HOH B 101 1601 601 HOH HOH . H 4 HOH B 102 1602 602 HOH HOH . H 4 HOH B 103 1603 603 HOH HOH . H 4 HOH B 104 1604 604 HOH HOH . H 4 HOH B 105 1605 605 HOH HOH . H 4 HOH B 106 1606 606 HOH HOH . H 4 HOH B 107 1607 607 HOH HOH . H 4 HOH B 108 1608 608 HOH HOH . H 4 HOH B 109 1609 609 HOH HOH . H 4 HOH B 110 1610 610 HOH HOH . H 4 HOH B 111 1611 611 HOH HOH . H 4 HOH B 112 1612 612 HOH HOH . H 4 HOH B 113 1613 613 HOH HOH . H 4 HOH B 114 1614 614 HOH HOH . H 4 HOH B 115 1615 615 HOH HOH . H 4 HOH B 116 1616 616 HOH HOH . H 4 HOH B 117 1617 617 HOH HOH . H 4 HOH B 118 1618 618 HOH HOH . H 4 HOH B 119 1619 619 HOH HOH . H 4 HOH B 120 1620 620 HOH HOH . H 4 HOH B 121 1621 621 HOH HOH . H 4 HOH B 122 1622 622 HOH HOH . H 4 HOH B 123 1623 623 HOH HOH . H 4 HOH B 124 1624 624 HOH HOH . H 4 HOH B 125 1625 625 HOH HOH . H 4 HOH B 126 1626 626 HOH HOH . H 4 HOH B 127 1627 627 HOH HOH . H 4 HOH B 128 1628 628 HOH HOH . H 4 HOH B 129 1629 629 HOH HOH . H 4 HOH B 130 1630 630 HOH HOH . H 4 HOH B 131 1631 631 HOH HOH . H 4 HOH B 132 1632 632 HOH HOH . H 4 HOH B 133 1633 633 HOH HOH . H 4 HOH B 134 1634 634 HOH HOH . H 4 HOH B 135 1635 635 HOH HOH . H 4 HOH B 136 1636 636 HOH HOH . H 4 HOH B 137 1637 637 HOH HOH . H 4 HOH B 138 1638 638 HOH HOH . H 4 HOH B 139 1639 639 HOH HOH . H 4 HOH B 140 1640 640 HOH HOH . H 4 HOH B 141 1641 641 HOH HOH . H 4 HOH B 142 1642 642 HOH HOH . H 4 HOH B 143 1643 643 HOH HOH . H 4 HOH B 144 1644 644 HOH HOH . H 4 HOH B 145 1645 645 HOH HOH . H 4 HOH B 146 1646 646 HOH HOH . H 4 HOH B 147 1647 647 HOH HOH . H 4 HOH B 148 1648 648 HOH HOH . H 4 HOH B 149 1649 649 HOH HOH . H 4 HOH B 150 1650 650 HOH HOH . H 4 HOH B 151 1651 651 HOH HOH . H 4 HOH B 152 1652 652 HOH HOH . H 4 HOH B 153 1653 653 HOH HOH . H 4 HOH B 154 1654 654 HOH HOH . H 4 HOH B 155 1655 655 HOH HOH . H 4 HOH B 156 1656 656 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . E 2 25.237 74.185 81.39 1 69.79 ? P PO4 414 B 1 HETATM 2 O O1 PO4 . . . E 2 25.08 73.528 80.025 1 71.86 ? O1 PO4 414 B 1 HETATM 3 O O2 PO4 . . . E 2 23.948 74.01 82.163 1 66.06 ? O2 PO4 414 B 1 HETATM 4 O O3 PO4 . . . E 2 26.365 73.553 82.186 1 69.5 ? O3 PO4 414 B 1 HETATM 5 O O4 PO4 . . . E 2 25.573 75.637 81.136 1 67.1 ? O4 PO4 414 B 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #