data_1B6L # _model_server_result.job_id gKz8sMiq-qTanmzzM_gxdQ _model_server_result.datetime_utc '2024-11-21 17:22:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b6l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 1B6L # _exptl.entry_id 1B6L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 545.671 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1-[2-(8-CARBAMOYLMETHYL-6,9-DIOXO-2-OXA-7,10-DIAZA-BICYCLO[11.2.2]HEPTADECA- 1(16),13(17),14-TRIEN-11-YL)-2-HYDROXY-ETHYL]-PIPERIDINE-2-CARBOXYLIC ACID TERT-BUTYLAMIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B6L _cell.length_a 51.25 _cell.length_b 59.19 _cell.length_c 61.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B6L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale3 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale4 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale5 B C ILE 66 B ILE 166 1_555 B N ABA 67 B ABA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 B C ABA 67 B ABA 167 1_555 B N GLY 68 B GLY 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 B C GLY 94 B GLY 194 1_555 B N ABA 95 B ABA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C ABA 95 B ABA 195 1_555 B N THR 96 B THR 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C28 H43 N5 O6' _chem_comp.formula_weight 545.671 _chem_comp.id PI4 _chem_comp.mon_nstd_flag . _chem_comp.name '1-[2-(8-CARBAMOYLMETHYL-6,9-DIOXO-2-OXA-7,10-DIAZA-BICYCLO[11.2.2]HEPTADECA- 1(16),13(17),14-TRIEN-11-YL)-2-HYDROXY-ETHYL]-PIPERIDINE-2-CARBOXYLIC ACID TERT-BUTYLAMIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 4' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C4 PI4 sing 275 n n C1 C23 PI4 sing 276 n n C1 H11 PI4 sing 277 n n C1 H12 PI4 sing 278 n n C2 O3 PI4 doub 279 n n C2 C4 PI4 sing 280 n n C2 N5 PI4 sing 281 n n C4 H41 PI4 sing 282 n n C4 H42 PI4 sing 283 n n N5 C6 PI4 sing 284 n n N5 HN5 PI4 sing 285 n n C6 C7 PI4 sing 286 n n C6 C9 PI4 sing 287 n n C6 H6 PI4 sing 288 n n C7 O8 PI4 doub 289 n n C7 N13 PI4 sing 290 n n C9 C10 PI4 sing 291 n n C9 H91 PI4 sing 292 n n C9 H92 PI4 sing 293 n n C10 O11 PI4 doub 294 n n C10 N12 PI4 sing 295 n n N12 H121 PI4 sing 296 n n N12 H122 PI4 sing 297 n n N13 C14 PI4 sing 298 n n N13 H13 PI4 sing 299 n n C14 C15 PI4 sing 300 n n C14 C24 PI4 sing 301 n n C14 H14 PI4 sing 302 n n C15 C16 PI4 sing 303 n n C15 H151 PI4 sing 304 n n C15 H152 PI4 sing 305 n n C16 C17 PI4 sing 306 n y C16 C19 PI4 doub 307 n y C17 C18 PI4 doub 308 n y C17 H17 PI4 sing 309 n n C18 C21 PI4 sing 310 n y C18 H18 PI4 sing 311 n n C19 C20 PI4 sing 312 n y C19 H19 PI4 sing 313 n n C20 C21 PI4 doub 314 n y C20 H20 PI4 sing 315 n n C21 O22 PI4 sing 316 n n O22 C23 PI4 sing 317 n n C23 H231 PI4 sing 318 n n C23 H232 PI4 sing 319 n n C24 O25 PI4 sing 320 n n C24 C26 PI4 sing 321 n n C24 H24 PI4 sing 322 n n O25 H25 PI4 sing 323 n n C26 N27 PI4 sing 324 n n C26 H261 PI4 sing 325 n n C26 H262 PI4 sing 326 n n N27 C28 PI4 sing 327 n n N27 C32 PI4 sing 328 n n C28 C29 PI4 sing 329 n n C28 C33 PI4 sing 330 n n C28 H28 PI4 sing 331 n n C29 C30 PI4 sing 332 n n C29 H291 PI4 sing 333 n n C29 H292 PI4 sing 334 n n C30 C31 PI4 sing 335 n n C30 H301 PI4 sing 336 n n C30 H302 PI4 sing 337 n n C31 C32 PI4 sing 338 n n C31 H311 PI4 sing 339 n n C31 H312 PI4 sing 340 n n C32 H321 PI4 sing 341 n n C32 H322 PI4 sing 342 n n C33 O34 PI4 doub 343 n n C33 N39 PI4 sing 344 n n C35 C36 PI4 sing 345 n n C35 C37 PI4 sing 346 n n C35 C38 PI4 sing 347 n n C35 N39 PI4 sing 348 n n C36 H361 PI4 sing 349 n n C36 H362 PI4 sing 350 n n C36 H363 PI4 sing 351 n n C37 H371 PI4 sing 352 n n C37 H372 PI4 sing 353 n n C37 H373 PI4 sing 354 n n C38 H381 PI4 sing 355 n n C38 H382 PI4 sing 356 n n C38 H383 PI4 sing 357 n n N39 H39 PI4 sing 358 n n # _atom_sites.entry_id 1B6L _atom_sites.fract_transf_matrix[1][1] 0.019512 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016192 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 502 502 SO4 SO4 . D 2 SO4 A 1 503 503 SO4 SO4 . E 3 PI4 A 1 201 201 PI4 PI4 . F 2 SO4 B 1 501 501 SO4 SO4 . G 4 HOH A 1 301 301 HOH HOH . G 4 HOH A 2 304 304 HOH HOH . G 4 HOH A 3 305 305 HOH HOH . G 4 HOH A 4 307 307 HOH HOH . G 4 HOH A 5 308 308 HOH HOH . G 4 HOH A 6 309 309 HOH HOH . G 4 HOH A 7 310 310 HOH HOH . G 4 HOH A 8 313 313 HOH HOH . G 4 HOH A 9 316 316 HOH HOH . G 4 HOH A 10 318 318 HOH HOH . G 4 HOH A 11 319 319 HOH HOH . G 4 HOH A 12 320 320 HOH HOH . G 4 HOH A 13 321 321 HOH HOH . G 4 HOH A 14 322 322 HOH HOH . G 4 HOH A 15 325 325 HOH HOH . G 4 HOH A 16 326 326 HOH HOH . G 4 HOH A 17 328 328 HOH HOH . G 4 HOH A 18 329 329 HOH HOH . G 4 HOH A 19 332 332 HOH HOH . G 4 HOH A 20 333 333 HOH HOH . G 4 HOH A 21 334 334 HOH HOH . G 4 HOH A 22 335 335 HOH HOH . G 4 HOH A 23 336 336 HOH HOH . G 4 HOH A 24 337 337 HOH HOH . G 4 HOH A 25 339 339 HOH HOH . G 4 HOH A 26 341 341 HOH HOH . G 4 HOH A 27 342 342 HOH HOH . G 4 HOH A 28 343 343 HOH HOH . G 4 HOH A 29 344 344 HOH HOH . G 4 HOH A 30 346 346 HOH HOH . G 4 HOH A 31 347 347 HOH HOH . G 4 HOH A 32 349 349 HOH HOH . G 4 HOH A 33 350 350 HOH HOH . G 4 HOH A 34 353 353 HOH HOH . G 4 HOH A 35 355 355 HOH HOH . G 4 HOH A 36 356 356 HOH HOH . G 4 HOH A 37 357 357 HOH HOH . G 4 HOH A 38 358 358 HOH HOH . G 4 HOH A 39 359 359 HOH HOH . G 4 HOH A 40 367 367 HOH HOH . G 4 HOH A 41 368 368 HOH HOH . G 4 HOH A 42 370 370 HOH HOH . G 4 HOH A 43 372 372 HOH HOH . G 4 HOH A 44 373 373 HOH HOH . G 4 HOH A 45 374 374 HOH HOH . G 4 HOH A 46 377 377 HOH HOH . G 4 HOH A 47 378 378 HOH HOH . G 4 HOH A 48 379 379 HOH HOH . G 4 HOH A 49 381 381 HOH HOH . G 4 HOH A 50 383 383 HOH HOH . G 4 HOH A 51 386 386 HOH HOH . G 4 HOH A 52 389 389 HOH HOH . G 4 HOH A 53 391 391 HOH HOH . G 4 HOH A 54 392 392 HOH HOH . G 4 HOH A 55 394 394 HOH HOH . G 4 HOH A 56 395 395 HOH HOH . G 4 HOH A 57 396 396 HOH HOH . G 4 HOH A 58 397 397 HOH HOH . G 4 HOH A 59 398 398 HOH HOH . G 4 HOH A 60 399 399 HOH HOH . H 4 HOH B 1 302 302 HOH HOH . H 4 HOH B 2 303 303 HOH HOH . H 4 HOH B 3 306 306 HOH HOH . H 4 HOH B 4 311 311 HOH HOH . H 4 HOH B 5 312 312 HOH HOH . H 4 HOH B 6 314 314 HOH HOH . H 4 HOH B 7 315 315 HOH HOH . H 4 HOH B 8 317 317 HOH HOH . H 4 HOH B 9 323 323 HOH HOH . H 4 HOH B 10 324 324 HOH HOH . H 4 HOH B 11 327 327 HOH HOH . H 4 HOH B 12 330 330 HOH HOH . H 4 HOH B 13 331 331 HOH HOH . H 4 HOH B 14 338 338 HOH HOH . H 4 HOH B 15 340 340 HOH HOH . H 4 HOH B 16 345 345 HOH HOH . H 4 HOH B 17 348 348 HOH HOH . H 4 HOH B 18 351 351 HOH HOH . H 4 HOH B 19 352 352 HOH HOH . H 4 HOH B 20 354 354 HOH HOH . H 4 HOH B 21 360 360 HOH HOH . H 4 HOH B 22 361 361 HOH HOH . H 4 HOH B 23 362 362 HOH HOH . H 4 HOH B 24 363 363 HOH HOH . H 4 HOH B 25 364 364 HOH HOH . H 4 HOH B 26 365 365 HOH HOH . H 4 HOH B 27 366 366 HOH HOH . H 4 HOH B 28 369 369 HOH HOH . H 4 HOH B 29 371 371 HOH HOH . H 4 HOH B 30 375 375 HOH HOH . H 4 HOH B 31 376 376 HOH HOH . H 4 HOH B 32 380 380 HOH HOH . H 4 HOH B 33 382 382 HOH HOH . H 4 HOH B 34 384 384 HOH HOH . H 4 HOH B 35 385 385 HOH HOH . H 4 HOH B 36 387 387 HOH HOH . H 4 HOH B 37 388 388 HOH HOH . H 4 HOH B 38 390 390 HOH HOH . H 4 HOH B 39 393 393 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PI4 . . . E 3 6.116 2.819 8.807 1 23.75 ? C1 PI4 201 A 1 HETATM 2 C C2 PI4 . . . E 3 4.243 3.231 10.445 1 21.58 ? C2 PI4 201 A 1 HETATM 3 O O3 PI4 . . . E 3 4.171 4.137 11.275 1 22.58 ? O3 PI4 201 A 1 HETATM 4 C C4 PI4 . . . E 3 4.789 3.497 9.056 1 22.49 ? C4 PI4 201 A 1 HETATM 5 N N5 PI4 . . . E 3 3.877 1.979 10.705 1 21.77 ? N5 PI4 201 A 1 HETATM 6 C C6 PI4 . . . E 3 3.311 1.588 12.006 1 18.29 ? C6 PI4 201 A 1 HETATM 7 C C7 PI4 . . . E 3 3.967 0.364 12.635 1 16.65 ? C7 PI4 201 A 1 HETATM 8 O O8 PI4 . . . E 3 3.931 -0.732 12.075 1 15.74 ? O8 PI4 201 A 1 HETATM 9 C C9 PI4 . . . E 3 1.814 1.324 11.855 1 18.85 ? C9 PI4 201 A 1 HETATM 10 C C10 PI4 . . . E 3 1.077 2.502 11.277 1 21.36 ? C10 PI4 201 A 1 HETATM 11 O O11 PI4 . . . E 3 0.512 3.311 12.006 1 21.01 ? O11 PI4 201 A 1 HETATM 12 N N12 PI4 . . . E 3 1.098 2.621 9.953 1 22.43 ? N12 PI4 201 A 1 HETATM 13 N N13 PI4 . . . E 3 4.556 0.559 13.81 1 15.85 ? N13 PI4 201 A 1 HETATM 14 C C14 PI4 . . . E 3 5.219 -0.533 14.534 1 15.19 ? C14 PI4 201 A 1 HETATM 15 C C15 PI4 . . . E 3 6.735 -0.32 14.535 1 15.46 ? C15 PI4 201 A 1 HETATM 16 C C16 PI4 . . . E 3 7.21 0.441 13.329 1 17.65 ? C16 PI4 201 A 1 HETATM 17 C C17 PI4 . . . E 3 7.333 1.823 13.377 1 18.59 ? C17 PI4 201 A 1 HETATM 18 C C18 PI4 . . . E 3 7.676 2.546 12.263 1 18.74 ? C18 PI4 201 A 1 HETATM 19 C C19 PI4 . . . E 3 7.464 -0.206 12.12 1 17.7 ? C19 PI4 201 A 1 HETATM 20 C C20 PI4 . . . E 3 7.811 0.516 10.99 1 19.51 ? C20 PI4 201 A 1 HETATM 21 C C21 PI4 . . . E 3 7.915 1.895 11.074 1 20.9 ? C21 PI4 201 A 1 HETATM 22 O O22 PI4 . . . E 3 8.222 2.651 9.971 1 23.87 ? O22 PI4 201 A 1 HETATM 23 C C23 PI4 . . . E 3 7.242 3.562 9.512 1 24.05 ? C23 PI4 201 A 1 HETATM 24 C C24 PI4 . . . E 3 4.685 -0.612 15.976 1 14.54 ? C24 PI4 201 A 1 HETATM 25 O O25 PI4 . . . E 3 5.095 0.541 16.717 1 13.05 ? O25 PI4 201 A 1 HETATM 26 C C26 PI4 . . . E 3 5.172 -1.871 16.673 1 12.69 ? C26 PI4 201 A 1 HETATM 27 N N27 PI4 . . . E 3 4.423 -3.034 16.141 1 14.32 ? N27 PI4 201 A 1 HETATM 28 C C28 PI4 . . . E 3 5.185 -4.266 16.487 1 13.73 ? C28 PI4 201 A 1 HETATM 29 C C29 PI4 . . . E 3 4.411 -5.503 16.016 1 14.47 ? C29 PI4 201 A 1 HETATM 30 C C30 PI4 . . . E 3 2.992 -5.579 16.563 1 15.01 ? C30 PI4 201 A 1 HETATM 31 C C31 PI4 . . . E 3 2.251 -4.28 16.288 1 15.04 ? C31 PI4 201 A 1 HETATM 32 C C32 PI4 . . . E 3 3.058 -3.08 16.761 1 13.04 ? C32 PI4 201 A 1 HETATM 33 C C33 PI4 . . . E 3 6.568 -4.231 15.839 1 13.53 ? C33 PI4 201 A 1 HETATM 34 O O34 PI4 . . . E 3 6.72 -3.711 14.732 1 14.59 ? O34 PI4 201 A 1 HETATM 35 C C35 PI4 . . . E 3 8.962 -4.851 16.086 1 13.63 ? C35 PI4 201 A 1 HETATM 36 C C36 PI4 . . . E 3 9.441 -3.485 15.608 1 12.55 ? C36 PI4 201 A 1 HETATM 37 C C37 PI4 . . . E 3 9.85 -5.302 17.242 1 14.85 ? C37 PI4 201 A 1 HETATM 38 C C38 PI4 . . . E 3 9.093 -5.866 14.956 1 13.24 ? C38 PI4 201 A 1 HETATM 39 N N39 PI4 . . . E 3 7.563 -4.78 16.541 1 13.83 ? N39 PI4 201 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 39 #