data_1B6M # _model_server_result.job_id oM-3vXSSHc69jrDm3nnmmg _model_server_result.datetime_utc '2024-11-16 10:39:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b6m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 1B6M # _exptl.entry_id 1B6M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 596.757 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[1-BENZYL-3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2] HEPTADECA-1(16),13(17),14-TRIEN-11-YLAMINO)-2-HYDROXY-PROPYL]-CARBAMIC ACID TERT-BUTYL ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B6M _cell.length_a 51.47 _cell.length_b 58.71 _cell.length_c 62.05 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B6M _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ILE 66 A ILE 66 1_555 A N ABA 67 A ABA 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ABA 67 A ABA 67 1_555 A N GLY 68 A GLY 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C GLY 94 A GLY 94 1_555 A N ABA 95 A ABA 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C ABA 95 A ABA 95 1_555 A N THR 96 A THR 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 B C ILE 66 B ILE 166 1_555 B N ABA 67 B ABA 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale6 B C ABA 67 B ABA 167 1_555 B N GLY 68 B GLY 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C GLY 94 B GLY 194 1_555 B N ABA 95 B ABA 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 B C ABA 95 B ABA 195 1_555 B N THR 96 B THR 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? # _chem_comp.formula 'C33 H48 N4 O6' _chem_comp.formula_weight 596.757 _chem_comp.id PI6 _chem_comp.mon_nstd_flag . _chem_comp.name '[1-BENZYL-3-(8-SEC-BUTYL-7,10-DIOXO-2-OXA-6,9-DIAZA-BICYCLO[11.2.2] HEPTADECA-1(16),13(17),14-TRIEN-11-YLAMINO)-2-HYDROXY-PROPYL]-CARBAMIC ACID TERT-BUTYL ESTER' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms 'MACROCYCLIC PEPTIDOMIMETIC INHIBITOR 6' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C PI6 doub 275 n n C O2 PI6 sing 276 n n O2 CT PI6 sing 277 n n CT C1 PI6 sing 278 n n CT C2 PI6 sing 279 n n CT C3 PI6 sing 280 n n C1 H11 PI6 sing 281 n n C1 H12 PI6 sing 282 n n C1 H13 PI6 sing 283 n n C2 H21 PI6 sing 284 n n C2 H22 PI6 sing 285 n n C2 H23 PI6 sing 286 n n C3 H31 PI6 sing 287 n n C3 H32 PI6 sing 288 n n C3 H33 PI6 sing 289 n n N CA PI6 sing 290 n n N H PI6 sing 291 n n CA C4 PI6 sing 292 n n CA CB PI6 sing 293 n n CA HA PI6 sing 294 n n C4 OXT PI6 sing 295 n n C4 CM PI6 sing 296 n n C4 HC PI6 sing 297 n n OXT HOR PI6 sing 298 n n CB CG PI6 sing 299 n n CB HB2 PI6 sing 300 n n CB HB3 PI6 sing 301 n n CG CD1 PI6 doub 302 n y CG CD2 PI6 sing 303 n y CD1 CE1 PI6 sing 304 n y CD1 HD1 PI6 sing 305 n n CD2 CE2 PI6 doub 306 n y CD2 HD2 PI6 sing 307 n n CE1 CZ PI6 doub 308 n y CE1 HE1 PI6 sing 309 n n CE2 CZ PI6 sing 310 n y CE2 HE2 PI6 sing 311 n n CZ HZ PI6 sing 312 n n CM HM2 PI6 sing 313 n n CM HM3 PI6 sing 314 n n N1 CA1 PI6 sing 315 n n N1 H1 PI6 sing 316 n n CA1 C5 PI6 sing 317 n n CA1 CB1 PI6 sing 318 n n CA1 HA1 PI6 sing 319 n n C5 O PI6 doub 320 n n CB1 CG1 PI6 sing 321 n n CB1 HB21 PI6 sing 322 n n CB1 HB31 PI6 sing 323 n n CG1 CD11 PI6 doub 324 n y CG1 CD21 PI6 sing 325 n y CD11 CE11 PI6 sing 326 n y CD11 HD11 PI6 sing 327 n n CD21 CE21 PI6 doub 328 n y CD21 HD21 PI6 sing 329 n n CE11 CZ1 PI6 doub 330 n y CE11 HE11 PI6 sing 331 n n CE21 CZ1 PI6 sing 332 n y CE21 HE21 PI6 sing 333 n n CZ1 OH PI6 sing 334 n n N2 CA2 PI6 sing 335 n n N2 H2 PI6 sing 336 n n CA2 C6 PI6 sing 337 n n CA2 CB2 PI6 sing 338 n n CA2 HA2 PI6 sing 339 n n C6 O3 PI6 doub 340 n n CB2 CG11 PI6 sing 341 n n CB2 CG2 PI6 sing 342 n n CB2 HB PI6 sing 343 n n CG11 CD12 PI6 sing 344 n n CG11 HG12 PI6 sing 345 n n CG11 HG13 PI6 sing 346 n n CG2 HG21 PI6 sing 347 n n CG2 HG22 PI6 sing 348 n n CG2 HG23 PI6 sing 349 n n CD12 HD12 PI6 sing 350 n n CD12 HD13 PI6 sing 351 n n CD12 HD14 PI6 sing 352 n n N3 CA3 PI6 sing 353 n n N3 H3 PI6 sing 354 n n CA3 C7 PI6 sing 355 n n CA3 HA21 PI6 sing 356 n n CA3 HA3 PI6 sing 357 n n C8 H14 PI6 sing 358 n n C8 H24 PI6 sing 359 n n C N PI6 sing 360 n n CM N1 PI6 sing 361 n n C5 N2 PI6 sing 362 n n C6 N3 PI6 sing 363 n n C7 C8 PI6 sing 364 n n C7 H89 PI6 sing 365 n n C7 H99 PI6 sing 366 n n OH C8 PI6 sing 367 n n # _atom_sites.entry_id 1B6M _atom_sites.fract_transf_matrix[1][1] 0.019429 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017033 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 502 502 SO4 SO4 . D 2 SO4 A 1 503 503 SO4 SO4 . E 2 SO4 B 1 501 501 SO4 SO4 . F 3 PI6 B 1 201 201 PI6 PI6 . G 4 HOH A 1 302 302 HOH HOH . G 4 HOH A 2 304 304 HOH HOH . G 4 HOH A 3 306 306 HOH HOH . G 4 HOH A 4 307 307 HOH HOH . G 4 HOH A 5 308 308 HOH HOH . G 4 HOH A 6 311 311 HOH HOH . G 4 HOH A 7 312 312 HOH HOH . G 4 HOH A 8 313 313 HOH HOH . G 4 HOH A 9 314 314 HOH HOH . G 4 HOH A 10 319 319 HOH HOH . G 4 HOH A 11 323 323 HOH HOH . G 4 HOH A 12 327 327 HOH HOH . G 4 HOH A 13 329 329 HOH HOH . G 4 HOH A 14 333 333 HOH HOH . G 4 HOH A 15 334 334 HOH HOH . G 4 HOH A 16 335 335 HOH HOH . G 4 HOH A 17 338 338 HOH HOH . G 4 HOH A 18 339 339 HOH HOH . G 4 HOH A 19 341 341 HOH HOH . G 4 HOH A 20 342 342 HOH HOH . G 4 HOH A 21 344 344 HOH HOH . G 4 HOH A 22 345 345 HOH HOH . G 4 HOH A 23 349 349 HOH HOH . G 4 HOH A 24 351 351 HOH HOH . G 4 HOH A 25 353 353 HOH HOH . G 4 HOH A 26 356 356 HOH HOH . G 4 HOH A 27 358 358 HOH HOH . G 4 HOH A 28 360 360 HOH HOH . G 4 HOH A 29 364 364 HOH HOH . G 4 HOH A 30 366 366 HOH HOH . G 4 HOH A 31 371 371 HOH HOH . G 4 HOH A 32 372 372 HOH HOH . G 4 HOH A 33 373 373 HOH HOH . G 4 HOH A 34 374 374 HOH HOH . G 4 HOH A 35 375 375 HOH HOH . G 4 HOH A 36 378 378 HOH HOH . G 4 HOH A 37 379 379 HOH HOH . G 4 HOH A 38 381 381 HOH HOH . G 4 HOH A 39 382 382 HOH HOH . G 4 HOH A 40 383 383 HOH HOH . G 4 HOH A 41 387 387 HOH HOH . G 4 HOH A 42 388 388 HOH HOH . G 4 HOH A 43 389 389 HOH HOH . G 4 HOH A 44 390 390 HOH HOH . G 4 HOH A 45 391 391 HOH HOH . G 4 HOH A 46 392 392 HOH HOH . G 4 HOH A 47 393 393 HOH HOH . G 4 HOH A 48 395 395 HOH HOH . H 4 HOH B 1 301 301 HOH HOH . H 4 HOH B 2 303 303 HOH HOH . H 4 HOH B 3 305 305 HOH HOH . H 4 HOH B 4 309 309 HOH HOH . H 4 HOH B 5 310 310 HOH HOH . H 4 HOH B 6 315 315 HOH HOH . H 4 HOH B 7 316 316 HOH HOH . H 4 HOH B 8 317 317 HOH HOH . H 4 HOH B 9 318 318 HOH HOH . H 4 HOH B 10 320 320 HOH HOH . H 4 HOH B 11 321 321 HOH HOH . H 4 HOH B 12 322 322 HOH HOH . H 4 HOH B 13 324 324 HOH HOH . H 4 HOH B 14 325 325 HOH HOH . H 4 HOH B 15 326 326 HOH HOH . H 4 HOH B 16 328 328 HOH HOH . H 4 HOH B 17 330 330 HOH HOH . H 4 HOH B 18 331 331 HOH HOH . H 4 HOH B 19 332 332 HOH HOH . H 4 HOH B 20 336 336 HOH HOH . H 4 HOH B 21 337 337 HOH HOH . H 4 HOH B 22 340 340 HOH HOH . H 4 HOH B 23 343 343 HOH HOH . H 4 HOH B 24 346 346 HOH HOH . H 4 HOH B 25 347 347 HOH HOH . H 4 HOH B 26 348 348 HOH HOH . H 4 HOH B 27 350 350 HOH HOH . H 4 HOH B 28 352 352 HOH HOH . H 4 HOH B 29 354 354 HOH HOH . H 4 HOH B 30 355 355 HOH HOH . H 4 HOH B 31 357 357 HOH HOH . H 4 HOH B 32 359 359 HOH HOH . H 4 HOH B 33 361 361 HOH HOH . H 4 HOH B 34 362 362 HOH HOH . H 4 HOH B 35 363 363 HOH HOH . H 4 HOH B 36 365 365 HOH HOH . H 4 HOH B 37 367 367 HOH HOH . H 4 HOH B 38 368 368 HOH HOH . H 4 HOH B 39 369 369 HOH HOH . H 4 HOH B 40 370 370 HOH HOH . H 4 HOH B 41 376 376 HOH HOH . H 4 HOH B 42 377 377 HOH HOH . H 4 HOH B 43 380 380 HOH HOH . H 4 HOH B 44 384 384 HOH HOH . H 4 HOH B 45 385 385 HOH HOH . H 4 HOH B 46 386 386 HOH HOH . H 4 HOH B 47 394 394 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PI6 . . . F 3 3.835 -0.032 12.046 1 17.16 ? O1 PI6 201 B 1 HETATM 2 C C PI6 . . . F 3 3.821 1.158 12.399 1 18.42 ? C PI6 201 B 1 HETATM 3 O O2 PI6 . . . F 3 2.808 1.969 12.124 1 18.16 ? O2 PI6 201 B 1 HETATM 4 C CT PI6 . . . F 3 1.587 1.371 11.646 1 17.53 ? CT PI6 201 B 1 HETATM 5 C C1 PI6 . . . F 3 1.077 0.32 12.634 1 16.48 ? C1 PI6 201 B 1 HETATM 6 C C2 PI6 . . . F 3 0.556 2.486 11.539 1 16.23 ? C2 PI6 201 B 1 HETATM 7 C C3 PI6 . . . F 3 1.809 0.765 10.258 1 16.68 ? C3 PI6 201 B 1 HETATM 8 N N PI6 . . . F 3 4.828 1.713 13.068 1 17.86 ? N PI6 201 B 1 HETATM 9 C CA PI6 . . . F 3 6.033 0.966 13.447 1 18.6 ? CA PI6 201 B 1 HETATM 10 C C4 PI6 . . . F 3 6.008 0.539 14.904 1 18.56 ? C4 PI6 201 B 1 HETATM 11 O OXT PI6 . . . F 3 7.205 -0.189 15.192 1 20.12 ? OXT PI6 201 B 1 HETATM 12 C CB PI6 . . . F 3 7.275 1.805 13.183 1 18.75 ? CB PI6 201 B 1 HETATM 13 C CG PI6 . . . F 3 7.475 2.132 11.746 1 21.59 ? CG PI6 201 B 1 HETATM 14 C CD1 PI6 . . . F 3 7.235 3.417 11.276 1 22.43 ? CD1 PI6 201 B 1 HETATM 15 C CD2 PI6 . . . F 3 7.865 1.146 10.85 1 21.38 ? CD2 PI6 201 B 1 HETATM 16 C CE1 PI6 . . . F 3 7.385 3.717 9.934 1 23.48 ? CE1 PI6 201 B 1 HETATM 17 C CE2 PI6 . . . F 3 8.017 1.435 9.508 1 22.01 ? CE2 PI6 201 B 1 HETATM 18 C CZ PI6 . . . F 3 7.772 2.723 9.046 1 23.2 ? CZ PI6 201 B 1 HETATM 19 C CM PI6 . . . F 3 4.804 -0.349 15.187 1 18.74 ? CM PI6 201 B 1 HETATM 20 N N1 PI6 . . . F 3 4.892 -0.754 16.6 1 19.09 ? N1 PI6 201 B 1 HETATM 21 C CA1 PI6 . . . F 3 4.673 -2.201 16.861 1 18.47 ? CA1 PI6 201 B 1 HETATM 22 C C5 PI6 . . . F 3 5.689 -3.186 16.291 1 18.77 ? C5 PI6 201 B 1 HETATM 23 O O PI6 . . . F 3 5.996 -3.175 15.097 1 18.63 ? O PI6 201 B 1 HETATM 24 C CB1 PI6 . . . F 3 3.267 -2.654 16.446 1 18.84 ? CB1 PI6 201 B 1 HETATM 25 C CG1 PI6 . . . F 3 3.121 -4.151 16.57 1 20.82 ? CG1 PI6 201 B 1 HETATM 26 C CD11 PI6 . . . F 3 3.169 -4.963 15.439 1 21.71 ? CD11 PI6 201 B 1 HETATM 27 C CD21 PI6 . . . F 3 3.091 -4.767 17.823 1 21.02 ? CD21 PI6 201 B 1 HETATM 28 C CE11 PI6 . . . F 3 3.209 -6.339 15.547 1 21.43 ? CE11 PI6 201 B 1 HETATM 29 C CE21 PI6 . . . F 3 3.131 -6.148 17.942 1 21.24 ? CE21 PI6 201 B 1 HETATM 30 C CZ1 PI6 . . . F 3 3.198 -6.928 16.795 1 22.5 ? CZ1 PI6 201 B 1 HETATM 31 N N2 PI6 . . . F 3 6.187 -4.05 17.169 1 18.94 ? N2 PI6 201 B 1 HETATM 32 C CA2 PI6 . . . F 3 7.152 -5.1 16.815 1 19.42 ? CA2 PI6 201 B 1 HETATM 33 C C6 PI6 . . . F 3 6.912 -6.178 17.865 1 20.35 ? C6 PI6 201 B 1 HETATM 34 O O3 PI6 . . . F 3 7.047 -5.922 19.064 1 20.17 ? O3 PI6 201 B 1 HETATM 35 C CB2 PI6 . . . F 3 8.628 -4.637 16.895 1 20.12 ? CB2 PI6 201 B 1 HETATM 36 C CG11 PI6 . . . F 3 8.898 -3.565 15.839 1 21.68 ? CG11 PI6 201 B 1 HETATM 37 C CG2 PI6 . . . F 3 9.567 -5.831 16.696 1 19.75 ? CG2 PI6 201 B 1 HETATM 38 C CD12 PI6 . . . F 3 10.344 -3.398 15.484 1 23.81 ? CD12 PI6 201 B 1 HETATM 39 O OH PI6 . . . F 3 3.305 -8.296 16.863 1 24.25 ? OH PI6 201 B 1 HETATM 40 N N3 PI6 . . . F 3 6.508 -7.362 17.415 1 21.03 ? N3 PI6 201 B 1 HETATM 41 C CA3 PI6 . . . F 3 6.254 -8.457 18.335 1 21.68 ? CA3 PI6 201 B 1 HETATM 42 C C7 PI6 . . . F 3 5.213 -9.454 17.845 1 23.77 ? C7 PI6 201 B 1 HETATM 43 C C8 PI6 . . . F 3 3.79 -8.941 18.029 1 26.39 ? C8 PI6 201 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 340 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #