data_1B76 # _model_server_result.job_id Y3GtM3pH1-8qxSwOL2o6Pw _model_server_result.datetime_utc '2024-11-15 19:25:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b76 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1552}' # _entry.id 1B76 # _exptl.entry_id 1B76 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B76 _cell.length_a 124.8 _cell.length_b 250.9 _cell.length_c 105.7 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B76 _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1B76 _atom_sites.fract_transf_matrix[1][1] 0.008013 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.003986 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ATP A 1 1552 552 ATP ATP . D 2 ATP B 1 2552 552 ATP ATP . E 3 HOH A 1 551 551 HOH HOH . F 3 HOH B 1 553 553 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 2 27.393 21.921 31.949 1 84.35 ? PG ATP 1552 A 1 HETATM 2 O O1G ATP . . . C 2 27.243 20.476 31.482 1 84.4 ? O1G ATP 1552 A 1 HETATM 3 O O2G ATP . . . C 2 28.41 22.073 33.082 1 82.37 ? O2G ATP 1552 A 1 HETATM 4 O O3G ATP . . . C 2 27.721 22.852 30.79 1 82.88 ? O3G ATP 1552 A 1 HETATM 5 P PB ATP . . . C 2 24.432 22.279 32.035 1 79.55 ? PB ATP 1552 A 1 HETATM 6 O O1B ATP . . . C 2 24.1 23.596 31.421 1 78.01 ? O1B ATP 1552 A 1 HETATM 7 O O2B ATP . . . C 2 24.262 21.03 31.224 1 80.95 ? O2B ATP 1552 A 1 HETATM 8 O O3B ATP . . . C 2 25.962 22.361 32.587 1 81.97 ? O3B ATP 1552 A 1 HETATM 9 P PA ATP . . . C 2 22.447 23.147 34.049 1 58.79 ? PA ATP 1552 A 1 HETATM 10 O O1A ATP . . . C 2 21.279 23.21 33.121 1 58.21 ? O1A ATP 1552 A 1 HETATM 11 O O2A ATP . . . C 2 22.239 22.726 35.464 1 59.6 ? O2A ATP 1552 A 1 HETATM 12 O O3A ATP . . . C 2 23.524 22.145 33.377 1 69.95 ? O3A ATP 1552 A 1 HETATM 13 O O5' ATP . . . C 2 23.226 24.542 34.08 1 53.4 ? O5' ATP 1552 A 1 HETATM 14 C C5' ATP . . . C 2 22.549 25.794 33.948 1 41.62 ? C5' ATP 1552 A 1 HETATM 15 C C4' ATP . . . C 2 23.504 26.835 33.429 1 32.81 ? C4' ATP 1552 A 1 HETATM 16 O O4' ATP . . . C 2 24.535 27.034 34.412 1 29.02 ? O4' ATP 1552 A 1 HETATM 17 C C3' ATP . . . C 2 24.268 26.411 32.19 1 30.9 ? C3' ATP 1552 A 1 HETATM 18 O O3' ATP . . . C 2 23.538 26.75 31.027 1 33.29 ? O3' ATP 1552 A 1 HETATM 19 C C2' ATP . . . C 2 25.503 27.278 32.258 1 30.09 ? C2' ATP 1552 A 1 HETATM 20 O O2' ATP . . . C 2 25.226 28.58 31.808 1 30.11 ? O2' ATP 1552 A 1 HETATM 21 C C1' ATP . . . C 2 25.746 27.343 33.757 1 32.62 ? C1' ATP 1552 A 1 HETATM 22 N N9 ATP . . . C 2 26.788 26.437 34.225 1 36.43 ? N9 ATP 1552 A 1 HETATM 23 C C8 ATP . . . C 2 26.666 25.136 34.637 1 39.4 ? C8 ATP 1552 A 1 HETATM 24 N N7 ATP . . . C 2 27.793 24.599 35.049 1 41.75 ? N7 ATP 1552 A 1 HETATM 25 C C5 ATP . . . C 2 28.723 25.617 34.884 1 42.07 ? C5 ATP 1552 A 1 HETATM 26 C C6 ATP . . . C 2 30.102 25.689 35.148 1 43.28 ? C6 ATP 1552 A 1 HETATM 27 N N6 ATP . . . C 2 30.801 24.677 35.659 1 45.55 ? N6 ATP 1552 A 1 HETATM 28 N N1 ATP . . . C 2 30.74 26.847 34.866 1 42.23 ? N1 ATP 1552 A 1 HETATM 29 C C2 ATP . . . C 2 30.025 27.862 34.354 1 42.8 ? C2 ATP 1552 A 1 HETATM 30 N N3 ATP . . . C 2 28.723 27.918 34.068 1 41.87 ? N3 ATP 1552 A 1 HETATM 31 C C4 ATP . . . C 2 28.12 26.751 34.363 1 40.34 ? C4 ATP 1552 A 1 HETATM 32 H HO2' ATP . . . C 2 26.034 29.077 31.872 1 0 ? HO2' ATP 1552 A 1 HETATM 33 H HN61 ATP . . . C 2 31.785 24.781 35.843 1 0 ? HN61 ATP 1552 A 1 HETATM 34 H HN62 ATP . . . C 2 30.333 23.811 35.884 1 0 ? HN62 ATP 1552 A 1 # _model_server_stats.io_time_ms 111 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 34 #