data_1B7V # _model_server_result.job_id rIpBaD56VmJX5qDQFtpy0w _model_server_result.datetime_utc '2024-10-12 14:34:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b7v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":93}' # _entry.id 1B7V # _exptl.entry_id 1B7V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B7V _cell.length_a 37.09 _cell.length_b 39.16 _cell.length_c 43.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B7V _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 11 A CYS 32 1_555 B CAB HEC . A HEC 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 ? covale ? covale2 A SG CYS 14 A CYS 35 1_555 B CAC HEC . A HEC 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.904 ? metalc ? metalc1 A NE2 HIS 15 A HIS 36 1_555 B FE HEC . A HEC 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 A SD MET 50 A MET 71 1_555 B FE HEC . A HEC 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 103 n n FE NB HEC sing 104 n n FE NC HEC sing 105 n n FE ND HEC sing 106 n n CHA C1A HEC doub 107 n n CHA C4D HEC sing 108 n n CHA HHA HEC sing 109 n n CHB C4A HEC doub 110 n n CHB C1B HEC sing 111 n n CHB HHB HEC sing 112 n n CHC C4B HEC doub 113 n n CHC C1C HEC sing 114 n n CHC HHC HEC sing 115 n n CHD C4C HEC doub 116 n n CHD C1D HEC sing 117 n n CHD HHD HEC sing 118 n n NA C1A HEC sing 119 n y NA C4A HEC sing 120 n y C1A C2A HEC sing 121 n y C2A C3A HEC doub 122 n y C2A CAA HEC sing 123 n n C3A C4A HEC sing 124 n y C3A CMA HEC sing 125 n n CMA HMA1 HEC sing 126 n n CMA HMA2 HEC sing 127 n n CMA HMA3 HEC sing 128 n n CAA CBA HEC sing 129 n n CAA HAA1 HEC sing 130 n n CAA HAA2 HEC sing 131 n n CBA CGA HEC sing 132 n n CBA HBA1 HEC sing 133 n n CBA HBA2 HEC sing 134 n n CGA O1A HEC doub 135 n n CGA O2A HEC sing 136 n n O2A H2A HEC sing 137 n n NB C1B HEC sing 138 n y NB C4B HEC sing 139 n y C1B C2B HEC doub 140 n y C2B C3B HEC sing 141 n y C2B CMB HEC sing 142 n n C3B C4B HEC sing 143 n y C3B CAB HEC doub 144 e n CMB HMB1 HEC sing 145 n n CMB HMB2 HEC sing 146 n n CMB HMB3 HEC sing 147 n n CAB CBB HEC sing 148 n n CAB HAB HEC sing 149 n n CBB HBB1 HEC sing 150 n n CBB HBB2 HEC sing 151 n n CBB HBB3 HEC sing 152 n n NC C1C HEC sing 153 n y NC C4C HEC sing 154 n y C1C C2C HEC doub 155 n y C2C C3C HEC sing 156 n y C2C CMC HEC sing 157 n n C3C C4C HEC sing 158 n y C3C CAC HEC doub 159 e n CMC HMC1 HEC sing 160 n n CMC HMC2 HEC sing 161 n n CMC HMC3 HEC sing 162 n n CAC CBC HEC sing 163 n n CAC HAC HEC sing 164 n n CBC HBC1 HEC sing 165 n n CBC HBC2 HEC sing 166 n n CBC HBC3 HEC sing 167 n n ND C1D HEC sing 168 n y ND C4D HEC sing 169 n y C1D C2D HEC doub 170 n y C2D C3D HEC sing 171 n y C2D CMD HEC sing 172 n n C3D C4D HEC doub 173 n y C3D CAD HEC sing 174 n n CMD HMD1 HEC sing 175 n n CMD HMD2 HEC sing 176 n n CMD HMD3 HEC sing 177 n n CAD CBD HEC sing 178 n n CAD HAD1 HEC sing 179 n n CAD HAD2 HEC sing 180 n n CBD CGD HEC sing 181 n n CBD HBD1 HEC sing 182 n n CBD HBD2 HEC sing 183 n n CGD O1D HEC doub 184 n n CGD O2D HEC sing 185 n n O2D H2D HEC sing 186 n n # _atom_sites.entry_id 1B7V _atom_sites.fract_transf_matrix[1][1] 0.026961 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022732 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEC A 1 93 93 HEC HEM . C 3 HOH A 1 94 1 HOH HOH . C 3 HOH A 2 95 2 HOH HOH . C 3 HOH A 3 96 3 HOH HOH . C 3 HOH A 4 97 4 HOH HOH . C 3 HOH A 5 98 5 HOH HOH . C 3 HOH A 6 99 6 HOH HOH . C 3 HOH A 7 100 7 HOH HOH . C 3 HOH A 8 101 8 HOH HOH . C 3 HOH A 9 102 9 HOH HOH . C 3 HOH A 10 103 10 HOH HOH . C 3 HOH A 11 104 11 HOH HOH . C 3 HOH A 12 105 12 HOH HOH . C 3 HOH A 13 106 13 HOH HOH . C 3 HOH A 14 107 14 HOH HOH . C 3 HOH A 15 108 15 HOH HOH . C 3 HOH A 16 109 16 HOH HOH . C 3 HOH A 17 110 17 HOH HOH . C 3 HOH A 18 111 18 HOH HOH . C 3 HOH A 19 112 19 HOH HOH . C 3 HOH A 20 113 20 HOH HOH . C 3 HOH A 21 114 21 HOH HOH . C 3 HOH A 22 115 22 HOH HOH . C 3 HOH A 23 116 23 HOH HOH . C 3 HOH A 24 117 24 HOH HOH . C 3 HOH A 25 118 25 HOH HOH . C 3 HOH A 26 119 26 HOH HOH . C 3 HOH A 27 120 27 HOH HOH . C 3 HOH A 28 121 28 HOH HOH . C 3 HOH A 29 122 29 HOH HOH . C 3 HOH A 30 123 30 HOH HOH . C 3 HOH A 31 124 31 HOH HOH . C 3 HOH A 32 125 32 HOH HOH . C 3 HOH A 33 126 33 HOH HOH . C 3 HOH A 34 127 35 HOH HOH . C 3 HOH A 35 128 36 HOH HOH . C 3 HOH A 36 129 37 HOH HOH . C 3 HOH A 37 130 38 HOH HOH . C 3 HOH A 38 131 39 HOH HOH . C 3 HOH A 39 132 40 HOH HOH . C 3 HOH A 40 133 41 HOH HOH . C 3 HOH A 41 134 42 HOH HOH . C 3 HOH A 42 135 43 HOH HOH . C 3 HOH A 43 136 44 HOH HOH . C 3 HOH A 44 137 45 HOH HOH . C 3 HOH A 45 138 46 HOH HOH . C 3 HOH A 46 139 48 HOH HOH . C 3 HOH A 47 140 49 HOH HOH . C 3 HOH A 48 141 50 HOH HOH . C 3 HOH A 49 142 51 HOH HOH . C 3 HOH A 50 143 52 HOH HOH . C 3 HOH A 51 144 53 HOH HOH . C 3 HOH A 52 145 54 HOH HOH . C 3 HOH A 53 146 55 HOH HOH . C 3 HOH A 54 147 56 HOH HOH . C 3 HOH A 55 148 57 HOH HOH . C 3 HOH A 56 149 58 HOH HOH . C 3 HOH A 57 150 59 HOH HOH . C 3 HOH A 58 151 60 HOH HOH . C 3 HOH A 59 152 61 HOH HOH . C 3 HOH A 60 153 62 HOH HOH . C 3 HOH A 61 154 63 HOH HOH . C 3 HOH A 62 155 64 HOH HOH . C 3 HOH A 63 156 65 HOH HOH . C 3 HOH A 64 157 66 HOH HOH . C 3 HOH A 65 158 67 HOH HOH . C 3 HOH A 66 159 68 HOH HOH . C 3 HOH A 67 160 69 HOH HOH . C 3 HOH A 68 161 70 HOH HOH . C 3 HOH A 69 162 71 HOH HOH . C 3 HOH A 70 163 72 HOH HOH . C 3 HOH A 71 164 73 HOH HOH . C 3 HOH A 72 165 74 HOH HOH . C 3 HOH A 73 166 75 HOH HOH . C 3 HOH A 74 167 76 HOH HOH . C 3 HOH A 75 168 77 HOH HOH . C 3 HOH A 76 169 78 HOH HOH . C 3 HOH A 77 170 79 HOH HOH . C 3 HOH A 78 171 80 HOH HOH . C 3 HOH A 79 172 81 HOH HOH . C 3 HOH A 80 173 82 HOH HOH . C 3 HOH A 81 174 83 HOH HOH . C 3 HOH A 82 175 84 HOH HOH . C 3 HOH A 83 176 85 HOH HOH . C 3 HOH A 84 177 86 HOH HOH . C 3 HOH A 85 178 87 HOH HOH . C 3 HOH A 86 179 88 HOH HOH . C 3 HOH A 87 180 89 HOH HOH . C 3 HOH A 88 181 91 HOH HOH . C 3 HOH A 89 182 92 HOH HOH . C 3 HOH A 90 183 93 HOH HOH . C 3 HOH A 91 184 95 HOH HOH . C 3 HOH A 92 185 96 HOH HOH . C 3 HOH A 93 186 97 HOH HOH . C 3 HOH A 94 187 98 HOH HOH . C 3 HOH A 95 188 100 HOH HOH . C 3 HOH A 96 189 101 HOH HOH . C 3 HOH A 97 190 103 HOH HOH . C 3 HOH A 98 191 104 HOH HOH . C 3 HOH A 99 192 105 HOH HOH . C 3 HOH A 100 193 107 HOH HOH . C 3 HOH A 101 194 109 HOH HOH . C 3 HOH A 102 195 110 HOH HOH . C 3 HOH A 103 196 115 HOH HOH . C 3 HOH A 104 197 119 HOH HOH . C 3 HOH A 105 198 122 HOH HOH . C 3 HOH A 106 199 126 HOH HOH . C 3 HOH A 107 200 129 HOH HOH . C 3 HOH A 108 201 131 HOH HOH . C 3 HOH A 109 202 133 HOH HOH . C 3 HOH A 110 203 135 HOH HOH . C 3 HOH A 111 204 140 HOH HOH . C 3 HOH A 112 205 155 HOH HOH . C 3 HOH A 113 206 156 HOH HOH . C 3 HOH A 114 207 172 HOH HOH . C 3 HOH A 115 208 177 HOH HOH . C 3 HOH A 116 209 201 HOH HOH . C 3 HOH A 117 210 209 HOH HOH . C 3 HOH A 118 211 216 HOH HOH . C 3 HOH A 119 212 222 HOH HOH . C 3 HOH A 120 213 232 HOH HOH . C 3 HOH A 121 214 252 HOH HOH . C 3 HOH A 122 215 256 HOH HOH . C 3 HOH A 123 216 269 HOH HOH . C 3 HOH A 124 217 282 HOH HOH . C 3 HOH A 125 218 283 HOH HOH . C 3 HOH A 126 219 284 HOH HOH . C 3 HOH A 127 220 285 HOH HOH . C 3 HOH A 128 221 286 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . B 2 11.005 23.816 1.793 1 2.43 ? FE HEC 93 A 1 HETATM 2 C CHA HEC . . . B 2 13.068 26.011 0.2 1 4.51 ? CHA HEC 93 A 1 HETATM 3 C CHB HEC . . . B 2 10.322 26.293 4.174 1 2.14 ? CHB HEC 93 A 1 HETATM 4 C CHC HEC . . . B 2 8.955 21.663 3.444 1 3.17 ? CHC HEC 93 A 1 HETATM 5 C CHD HEC . . . B 2 12.228 21.228 -0.132 1 5.05 ? CHD HEC 93 A 1 HETATM 6 N NA HEC . . . B 2 11.614 25.774 2.145 1 2.28 ? NA HEC 93 A 1 HETATM 7 C C1A HEC . . . B 2 12.418 26.515 1.307 1 3.04 ? C1A HEC 93 A 1 HETATM 8 C C2A HEC . . . B 2 12.472 27.867 1.793 1 2.51 ? C2A HEC 93 A 1 HETATM 9 C C3A HEC . . . B 2 11.726 27.928 2.907 1 2.67 ? C3A HEC 93 A 1 HETATM 10 C C4A HEC . . . B 2 11.162 26.615 3.125 1 2.62 ? C4A HEC 93 A 1 HETATM 11 C CMA HEC . . . B 2 11.438 29.148 3.826 1 2.83 ? CMA HEC 93 A 1 HETATM 12 C CAA HEC . . . B 2 13.283 29.009 1.133 1 2.57 ? CAA HEC 93 A 1 HETATM 13 C CBA HEC . . . B 2 14.795 28.865 1.132 1 4.31 ? CBA HEC 93 A 1 HETATM 14 C CGA HEC . . . B 2 15.357 28.672 2.526 1 4.29 ? CGA HEC 93 A 1 HETATM 15 O O1A HEC . . . B 2 14.879 29.354 3.466 1 5.66 ? O1A HEC 93 A 1 HETATM 16 O O2A HEC . . . B 2 16.25 27.791 2.587 1 7.58 ? O2A HEC 93 A 1 HETATM 17 N NB HEC . . . B 2 9.873 23.96 3.505 1 2 ? NB HEC 93 A 1 HETATM 18 C C1B HEC . . . B 2 9.718 25.056 4.265 1 2 ? C1B HEC 93 A 1 HETATM 19 C C2B HEC . . . B 2 8.744 24.714 5.296 1 2.26 ? C2B HEC 93 A 1 HETATM 20 C C3B HEC . . . B 2 8.363 23.445 5.101 1 2.54 ? C3B HEC 93 A 1 HETATM 21 C C4B HEC . . . B 2 9.077 22.936 3.942 1 2.77 ? C4B HEC 93 A 1 HETATM 22 C CMB HEC . . . B 2 8.281 25.703 6.404 1 2.54 ? CMB HEC 93 A 1 HETATM 23 C CAB HEC . . . B 2 7.36 22.584 5.897 1 6.86 ? CAB HEC 93 A 1 HETATM 24 C CBB HEC . . . B 2 6.895 21.429 5.416 1 16.17 ? CBB HEC 93 A 1 HETATM 25 N NC HEC . . . B 2 10.663 21.826 1.691 1 2.65 ? NC HEC 93 A 1 HETATM 26 C C1C HEC . . . B 2 9.766 21.149 2.459 1 3.98 ? C1C HEC 93 A 1 HETATM 27 C C2C HEC . . . B 2 9.821 19.756 2.05 1 3.06 ? C2C HEC 93 A 1 HETATM 28 C C3C HEC . . . B 2 10.72 19.656 1.073 1 3.28 ? C3C HEC 93 A 1 HETATM 29 C C4C HEC . . . B 2 11.265 20.968 0.824 1 2.77 ? C4C HEC 93 A 1 HETATM 30 C CMC HEC . . . B 2 8.951 18.642 2.683 1 6.69 ? CMC HEC 93 A 1 HETATM 31 C CAC HEC . . . B 2 11.157 18.398 0.274 1 5.09 ? CAC HEC 93 A 1 HETATM 32 C CBC HEC . . . B 2 10.192 17.648 -0.303 1 9.06 ? CBC HEC 93 A 1 HETATM 33 N ND HEC . . . B 2 12.421 23.637 0.322 1 3.35 ? ND HEC 93 A 1 HETATM 34 C C1D HEC . . . B 2 12.708 22.491 -0.332 1 3.52 ? C1D HEC 93 A 1 HETATM 35 C C2D HEC . . . B 2 13.661 22.841 -1.379 1 2 ? C2D HEC 93 A 1 HETATM 36 C C3D HEC . . . B 2 13.898 24.152 -1.263 1 2.63 ? C3D HEC 93 A 1 HETATM 37 C C4D HEC . . . B 2 13.103 24.69 -0.181 1 2.48 ? C4D HEC 93 A 1 HETATM 38 C CMD HEC . . . B 2 14.278 21.829 -2.369 1 3.05 ? CMD HEC 93 A 1 HETATM 39 C CAD HEC . . . B 2 14.827 25.048 -2.126 1 3.53 ? CAD HEC 93 A 1 HETATM 40 C CBD HEC . . . B 2 13.966 25.931 -3.055 1 4.29 ? CBD HEC 93 A 1 HETATM 41 C CGD HEC . . . B 2 14.532 27.307 -3.238 1 9 ? CGD HEC 93 A 1 HETATM 42 O O1D HEC . . . B 2 14.401 28.123 -2.291 1 8.46 ? O1D HEC 93 A 1 HETATM 43 O O2D HEC . . . B 2 15.122 27.553 -4.319 1 11.2 ? O2D HEC 93 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #