data_1B86 # _model_server_result.job_id Aje5rBy6x5tSl-sBoLXZpw _model_server_result.datetime_utc '2024-12-26 19:03:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b86 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":701}' # _entry.id 1B86 # _exptl.entry_id 1B86 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 266.037 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-2,3-diphosphoglyceric acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B86 _cell.length_a 96.3 _cell.length_b 98.08 _cell.length_c 65.76 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B86 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 E FE HEM . A HEM 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc2 E FE HEM . A HEM 143 1_555 F O1 OXY . A OXY 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.931 ? metalc ? metalc3 M O HOH . B HOH 126 1_555 G FE HEM . B HEM 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? metalc ? metalc4 B NE2 HIS 92 B HIS 235 1_555 G FE HEM . B HEM 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc5 C NE2 HIS 87 C HIS 487 1_555 H FE HEM . C HEM 543 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc6 H FE HEM . C HEM 543 1_555 I O1 OXY . C OXY 544 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc7 O O HOH . D HOH 127 1_555 J FE HEM . D HEM 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc8 D NE2 HIS 92 D HIS 635 1_555 J FE HEM . D HEM 691 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? # _chem_comp.formula 'C3 H8 O10 P2' _chem_comp.formula_weight 266.037 _chem_comp.id DG2 _chem_comp.mon_nstd_flag . _chem_comp.name '(2R)-2,3-diphosphoglyceric acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '2,3-Bisphosphoglyceric acid;2,3-bisphosphoglycerate;2,3-BPG;2,3-diphosphoglyceric acid;2,3-diphosphoglycerate;2,3-DPG;(2~{R})-2,3-diphosphonooxypropanoic acid' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O15 P6 DG2 doub 83 n n O13 P6 DG2 sing 84 n n P6 O14 DG2 sing 85 n n P6 O5 DG2 sing 86 n n O5 C4 DG2 sing 87 n n C4 C3 DG2 sing 88 n n O7 C7 DG2 doub 89 n n C3 C7 DG2 sing 90 n n C3 O2 DG2 sing 91 n n C7 O8 DG2 sing 92 n n O2 P1 DG2 sing 93 n n O11 P1 DG2 doub 94 n n P1 O9 DG2 sing 95 n n P1 O10 DG2 sing 96 n n C3 H1 DG2 sing 97 n n C4 H2 DG2 sing 98 n n C4 H3 DG2 sing 99 n n O8 H4 DG2 sing 100 n n O9 H5 DG2 sing 101 n n O10 H6 DG2 sing 102 n n O14 H7 DG2 sing 103 n n O13 H8 DG2 sing 104 n n # _atom_sites.entry_id 1B86 _atom_sites.fract_transf_matrix[1][1] 0.010384 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010196 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015207 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 HEM A 1 143 143 HEM HEM . F 4 OXY A 1 144 144 OXY OXY . G 3 HEM B 1 291 291 HEM HEM . H 3 HEM C 1 543 543 HEM HEM . I 4 OXY C 1 544 544 OXY OXY . J 3 HEM D 1 691 691 HEM HEM . K 5 DG2 D 1 701 701 DG2 DG2 . L 6 HOH A 1 145 145 HOH HOH . L 6 HOH A 2 146 146 HOH HOH . L 6 HOH A 3 147 147 HOH HOH . L 6 HOH A 4 148 148 HOH HOH . L 6 HOH A 5 149 149 HOH HOH . L 6 HOH A 6 150 150 HOH HOH . L 6 HOH A 7 151 151 HOH HOH . L 6 HOH A 8 152 152 HOH HOH . L 6 HOH A 9 153 153 HOH HOH . L 6 HOH A 10 154 154 HOH HOH . L 6 HOH A 11 155 155 HOH HOH . L 6 HOH A 12 156 156 HOH HOH . L 6 HOH A 13 157 157 HOH HOH . L 6 HOH A 14 158 158 HOH HOH . L 6 HOH A 15 159 159 HOH HOH . L 6 HOH A 16 160 160 HOH HOH . L 6 HOH A 17 161 161 HOH HOH . L 6 HOH A 18 162 162 HOH HOH . L 6 HOH A 19 163 163 HOH HOH . L 6 HOH A 20 164 164 HOH HOH . L 6 HOH A 21 165 165 HOH HOH . L 6 HOH A 22 166 166 HOH HOH . L 6 HOH A 23 167 167 HOH HOH . L 6 HOH A 24 168 168 HOH HOH . L 6 HOH A 25 169 169 HOH HOH . L 6 HOH A 26 170 170 HOH HOH . L 6 HOH A 27 171 171 HOH HOH . L 6 HOH A 28 172 172 HOH HOH . L 6 HOH A 29 173 144 HOH HOH . M 6 HOH B 1 28 28 HOH HOH . M 6 HOH B 2 29 29 HOH HOH . M 6 HOH B 3 30 30 HOH HOH . M 6 HOH B 4 32 32 HOH HOH . M 6 HOH B 5 34 34 HOH HOH . M 6 HOH B 6 35 35 HOH HOH . M 6 HOH B 7 36 36 HOH HOH . M 6 HOH B 8 37 37 HOH HOH . M 6 HOH B 9 38 38 HOH HOH . M 6 HOH B 10 39 39 HOH HOH . M 6 HOH B 11 40 40 HOH HOH . M 6 HOH B 12 41 41 HOH HOH . M 6 HOH B 13 42 42 HOH HOH . M 6 HOH B 14 43 43 HOH HOH . M 6 HOH B 15 44 44 HOH HOH . M 6 HOH B 16 45 45 HOH HOH . M 6 HOH B 17 47 47 HOH HOH . M 6 HOH B 18 48 48 HOH HOH . M 6 HOH B 19 49 49 HOH HOH . M 6 HOH B 20 58 58 HOH HOH . M 6 HOH B 21 60 60 HOH HOH . M 6 HOH B 22 62 62 HOH HOH . M 6 HOH B 23 63 63 HOH HOH . M 6 HOH B 24 64 64 HOH HOH . M 6 HOH B 25 65 65 HOH HOH . M 6 HOH B 26 66 66 HOH HOH . M 6 HOH B 27 67 67 HOH HOH . M 6 HOH B 28 68 68 HOH HOH . M 6 HOH B 29 69 69 HOH HOH . M 6 HOH B 30 70 70 HOH HOH . M 6 HOH B 31 71 71 HOH HOH . M 6 HOH B 32 72 72 HOH HOH . M 6 HOH B 33 73 73 HOH HOH . M 6 HOH B 34 74 74 HOH HOH . M 6 HOH B 35 76 76 HOH HOH . M 6 HOH B 36 77 77 HOH HOH . M 6 HOH B 37 78 78 HOH HOH . M 6 HOH B 38 88 88 HOH HOH . M 6 HOH B 39 120 120 HOH HOH . M 6 HOH B 40 121 121 HOH HOH . M 6 HOH B 41 122 122 HOH HOH . M 6 HOH B 42 124 124 HOH HOH . M 6 HOH B 43 126 126 HOH HOH . M 6 HOH B 44 129 129 HOH HOH . M 6 HOH B 45 135 135 HOH HOH . M 6 HOH B 46 136 136 HOH HOH . N 6 HOH C 1 15 15 HOH HOH . N 6 HOH C 2 16 16 HOH HOH . N 6 HOH C 3 17 17 HOH HOH . N 6 HOH C 4 18 18 HOH HOH . N 6 HOH C 5 19 19 HOH HOH . N 6 HOH C 6 25 25 HOH HOH . N 6 HOH C 7 26 26 HOH HOH . N 6 HOH C 8 31 31 HOH HOH . N 6 HOH C 9 33 33 HOH HOH . N 6 HOH C 10 50 50 HOH HOH . N 6 HOH C 11 51 51 HOH HOH . N 6 HOH C 12 52 52 HOH HOH . N 6 HOH C 13 57 57 HOH HOH . N 6 HOH C 14 59 59 HOH HOH . N 6 HOH C 15 61 61 HOH HOH . N 6 HOH C 16 75 75 HOH HOH . O 6 HOH D 1 2 2 HOH HOH . O 6 HOH D 2 3 3 HOH HOH . O 6 HOH D 3 4 4 HOH HOH . O 6 HOH D 4 6 6 HOH HOH . O 6 HOH D 5 7 7 HOH HOH . O 6 HOH D 6 11 11 HOH HOH . O 6 HOH D 7 13 13 HOH HOH . O 6 HOH D 8 14 14 HOH HOH . O 6 HOH D 9 20 20 HOH HOH . O 6 HOH D 10 21 21 HOH HOH . O 6 HOH D 11 22 22 HOH HOH . O 6 HOH D 12 23 23 HOH HOH . O 6 HOH D 13 24 24 HOH HOH . O 6 HOH D 14 80 80 HOH HOH . O 6 HOH D 15 81 81 HOH HOH . O 6 HOH D 16 82 82 HOH HOH . O 6 HOH D 17 83 83 HOH HOH . O 6 HOH D 18 84 84 HOH HOH . O 6 HOH D 19 86 86 HOH HOH . O 6 HOH D 20 87 87 HOH HOH . O 6 HOH D 21 89 89 HOH HOH . O 6 HOH D 22 101 101 HOH HOH . O 6 HOH D 23 102 102 HOH HOH . O 6 HOH D 24 103 103 HOH HOH . O 6 HOH D 25 104 104 HOH HOH . O 6 HOH D 26 105 105 HOH HOH . O 6 HOH D 27 106 106 HOH HOH . O 6 HOH D 28 107 107 HOH HOH . O 6 HOH D 29 108 108 HOH HOH . O 6 HOH D 30 109 109 HOH HOH . O 6 HOH D 31 110 110 HOH HOH . O 6 HOH D 32 111 111 HOH HOH . O 6 HOH D 33 112 112 HOH HOH . O 6 HOH D 34 113 113 HOH HOH . O 6 HOH D 35 114 114 HOH HOH . O 6 HOH D 36 115 115 HOH HOH . O 6 HOH D 37 116 116 HOH HOH . O 6 HOH D 38 117 117 HOH HOH . O 6 HOH D 39 118 118 HOH HOH . O 6 HOH D 40 119 119 HOH HOH . O 6 HOH D 41 123 123 HOH HOH . O 6 HOH D 42 127 127 HOH HOH . O 6 HOH D 43 128 128 HOH HOH . O 6 HOH D 44 132 132 HOH HOH . O 6 HOH D 45 133 133 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 DG2 . . . K 5 -38.854 17.889 -19.514 1 30 ? C3 DG2 701 D 1 HETATM 2 C C4 DG2 . . . K 5 -39.609 19.186 -19.74 1 30 ? C4 DG2 701 D 1 HETATM 3 O O2 DG2 . . . K 5 -39.135 16.543 -19.582 1 30 ? O2 DG2 701 D 1 HETATM 4 O O5 DG2 . . . K 5 -39.966 20.393 -19.755 1 30 ? O5 DG2 701 D 1 HETATM 5 O O7 DG2 . . . K 5 -36.557 17.941 -20.228 1 30 ? O7 DG2 701 D 1 HETATM 6 O O8 DG2 . . . K 5 -36.885 18.514 -18.153 1 30 ? O8 DG2 701 D 1 HETATM 7 O O9 DG2 . . . K 5 -38.861 14.385 -18.192 1 30 ? O9 DG2 701 D 1 HETATM 8 O O10 DG2 . . . K 5 -38.427 16.438 -16.971 1 30 ? O10 DG2 701 D 1 HETATM 9 O O11 DG2 . . . K 5 -36.938 15.869 -18.949 1 30 ? O11 DG2 701 D 1 HETATM 10 P P1 DG2 . . . K 5 -38.247 15.84 -18.447 1 30 ? P1 DG2 701 D 1 HETATM 11 C C7 DG2 . . . K 5 -37.363 18.11 -19.318 1 30 ? C7 DG2 701 D 1 HETATM 12 P P6 DG2 . . . K 5 -39.358 21.83 -20.176 1 30 ? P6 DG2 701 D 1 HETATM 13 O O15 DG2 . . . K 5 -38.307 21.555 -21.06 1 30 ? O15 DG2 701 D 1 HETATM 14 O O14 DG2 . . . K 5 -38.92 22.075 -18.658 1 30 ? O14 DG2 701 D 1 HETATM 15 O O13 DG2 . . . K 5 -40.179 23.169 -20.476 1 30 ? O13 DG2 701 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #