data_1B87 # _model_server_result.job_id 5NXVLViiVirimBijjETxdA _model_server_result.datetime_utc '2025-03-06 23:27:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b87 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 1B87 # _exptl.entry_id 1B87 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 809.571 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETYL COENZYME *A' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B87 _cell.length_a 146.96 _cell.length_b 146.96 _cell.length_c 146.96 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B87 _symmetry.cell_setting cubic _symmetry.Int_Tables_number 214 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 41 3 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 26_655 -x+1,-y+1/2,z -1 0 0 0 -1 0 0 0 1 146.96 73.48 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H38 N7 O17 P3 S' _chem_comp.formula_weight 809.571 _chem_comp.id ACO _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETYL COENZYME *A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1A C2A ACO sing 1 n y N1A C6A ACO doub 2 n y C2A N3A ACO doub 3 n y C2A H2A ACO sing 4 n n N3A C4A ACO sing 5 n y C4A C5A ACO doub 6 n y C4A N9A ACO sing 7 n y C5A C6A ACO sing 8 n y C5A N7A ACO sing 9 n y C6A N6A ACO sing 10 n n N6A H61A ACO sing 11 n n N6A H62A ACO sing 12 n n N7A C8A ACO doub 13 n y C8A N9A ACO sing 14 n y C8A H8A ACO sing 15 n n N9A C1B ACO sing 16 n n C1B C2B ACO sing 17 n n C1B O4B ACO sing 18 n n C1B H1B ACO sing 19 n n C2B O2B ACO sing 20 n n C2B C3B ACO sing 21 n n C2B H2B ACO sing 22 n n O2B HO2A ACO sing 23 n n C3B O3B ACO sing 24 n n C3B C4B ACO sing 25 n n C3B H3B ACO sing 26 n n O3B P3B ACO sing 27 n n P3B O7A ACO doub 28 n n P3B O8A ACO sing 29 n n P3B O9A ACO sing 30 n n O8A HOA8 ACO sing 31 n n O9A HOA9 ACO sing 32 n n C4B O4B ACO sing 33 n n C4B C5B ACO sing 34 n n C4B H4B ACO sing 35 n n C5B O5B ACO sing 36 n n C5B H51A ACO sing 37 n n C5B H52A ACO sing 38 n n O5B P1A ACO sing 39 n n P1A O1A ACO doub 40 n n P1A O2A ACO sing 41 n n P1A O3A ACO sing 42 n n O2A HOA2 ACO sing 43 n n O3A P2A ACO sing 44 n n P2A O4A ACO doub 45 n n P2A O5A ACO sing 46 n n P2A O6A ACO sing 47 n n O5A HOA5 ACO sing 48 n n O6A CCP ACO sing 49 n n CBP CCP ACO sing 50 n n CBP CDP ACO sing 51 n n CBP CEP ACO sing 52 n n CBP CAP ACO sing 53 n n CCP H121 ACO sing 54 n n CCP H122 ACO sing 55 n n CDP H131 ACO sing 56 n n CDP H132 ACO sing 57 n n CDP H133 ACO sing 58 n n CEP H141 ACO sing 59 n n CEP H142 ACO sing 60 n n CEP H143 ACO sing 61 n n CAP OAP ACO sing 62 n n CAP C9P ACO sing 63 n n CAP H10 ACO sing 64 n n OAP HO1 ACO sing 65 n n C9P O9P ACO doub 66 n n C9P N8P ACO sing 67 n n N8P C7P ACO sing 68 n n N8P HN8 ACO sing 69 n n C7P C6P ACO sing 70 n n C7P H71 ACO sing 71 n n C7P H72 ACO sing 72 n n C6P C5P ACO sing 73 n n C6P H61 ACO sing 74 n n C6P H62 ACO sing 75 n n C5P O5P ACO doub 76 n n C5P N4P ACO sing 77 n n N4P C3P ACO sing 78 n n N4P HN4 ACO sing 79 n n C3P C2P ACO sing 80 n n C3P H31 ACO sing 81 n n C3P H32 ACO sing 82 n n C2P S1P ACO sing 83 n n C2P H21 ACO sing 84 n n C2P H22 ACO sing 85 n n S1P C ACO sing 86 n n C O ACO doub 87 n n C CH3 ACO sing 88 n n CH3 HH31 ACO sing 89 n n CH3 HH32 ACO sing 90 n n CH3 HH33 ACO sing 91 n n # _atom_sites.entry_id 1B87 _atom_sites.fract_transf_matrix[1][1] 0.006804 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006804 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006804 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ACO A 1 200 200 ACO ACO . C 3 HOH A 1 300 300 HOH HOH . C 3 HOH A 2 301 301 HOH HOH . C 3 HOH A 3 302 302 HOH HOH . C 3 HOH A 4 303 303 HOH HOH . C 3 HOH A 5 304 304 HOH HOH . C 3 HOH A 6 305 305 HOH HOH . C 3 HOH A 7 306 306 HOH HOH . C 3 HOH A 8 307 307 HOH HOH . C 3 HOH A 9 308 308 HOH HOH . C 3 HOH A 10 309 309 HOH HOH . C 3 HOH A 11 310 310 HOH HOH . C 3 HOH A 12 311 311 HOH HOH . C 3 HOH A 13 312 312 HOH HOH . C 3 HOH A 14 313 313 HOH HOH . C 3 HOH A 15 314 314 HOH HOH . C 3 HOH A 16 315 315 HOH HOH . C 3 HOH A 17 316 316 HOH HOH . C 3 HOH A 18 317 317 HOH HOH . C 3 HOH A 19 318 318 HOH HOH . C 3 HOH A 20 319 319 HOH HOH . C 3 HOH A 21 320 320 HOH HOH . C 3 HOH A 22 321 321 HOH HOH . C 3 HOH A 23 322 322 HOH HOH . C 3 HOH A 24 323 323 HOH HOH . C 3 HOH A 25 324 324 HOH HOH . C 3 HOH A 26 325 325 HOH HOH . C 3 HOH A 27 326 326 HOH HOH . C 3 HOH A 28 327 327 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1A ACO . . . B 2 55.368 26.653 21.196 1 9.11 ? N1A ACO 200 A 1 HETATM 2 C C2A ACO . . . B 2 54.817 27.18 20.102 1 2 ? C2A ACO 200 A 1 HETATM 3 N N3A ACO . . . B 2 53.867 28.098 20.02 1 3.19 ? N3A ACO 200 A 1 HETATM 4 C C4A ACO . . . B 2 53.461 28.487 21.261 1 7.64 ? C4A ACO 200 A 1 HETATM 5 C C5A ACO . . . B 2 53.929 28.041 22.463 1 7.46 ? C5A ACO 200 A 1 HETATM 6 C C6A ACO . . . B 2 54.949 27.055 22.417 1 7.58 ? C6A ACO 200 A 1 HETATM 7 N N6A ACO . . . B 2 55.499 26.525 23.512 1 7.84 ? N6A ACO 200 A 1 HETATM 8 N N7A ACO . . . B 2 53.27 28.671 23.512 1 9.25 ? N7A ACO 200 A 1 HETATM 9 C C8A ACO . . . B 2 52.437 29.475 22.914 1 8.42 ? C8A ACO 200 A 1 HETATM 10 N N9A ACO . . . B 2 52.499 29.416 21.548 1 11.48 ? N9A ACO 200 A 1 HETATM 11 C C1B ACO . . . B 2 51.723 30.164 20.565 1 9.88 ? C1B ACO 200 A 1 HETATM 12 C C2B ACO . . . B 2 50.228 29.925 20.696 1 11.74 ? C2B ACO 200 A 1 HETATM 13 O O2B ACO . . . B 2 49.868 28.789 19.907 1 13.5 ? O2B ACO 200 A 1 HETATM 14 C C3B ACO . . . B 2 49.569 31.173 20.124 1 13.51 ? C3B ACO 200 A 1 HETATM 15 O O3B ACO . . . B 2 49.668 31.144 18.687 1 17.16 ? O3B ACO 200 A 1 HETATM 16 P P3B ACO . . . B 2 48.412 31.588 17.759 1 18.03 ? P3B ACO 200 A 1 HETATM 17 O O7A ACO . . . B 2 47.341 30.622 18.125 1 16.92 ? O7A ACO 200 A 1 HETATM 18 O O8A ACO . . . B 2 48.909 31.45 16.37 1 16.17 ? O8A ACO 200 A 1 HETATM 19 O O9A ACO . . . B 2 48.137 32.989 18.168 1 17.18 ? O9A ACO 200 A 1 HETATM 20 C C4B ACO . . . B 2 50.521 32.253 20.659 1 12.16 ? C4B ACO 200 A 1 HETATM 21 O O4B ACO . . . B 2 51.785 31.585 20.7 1 11.8 ? O4B ACO 200 A 1 HETATM 22 C C5B ACO . . . B 2 50.155 32.821 22.038 1 7.7 ? C5B ACO 200 A 1 HETATM 23 O O5B ACO . . . B 2 49.957 31.747 22.957 1 14.33 ? O5B ACO 200 A 1 HETATM 24 P P1A ACO . . . B 2 49.507 31.978 24.491 1 6.9 ? P1A ACO 200 A 1 HETATM 25 O O1A ACO . . . B 2 48.127 31.469 24.628 1 15.3 ? O1A ACO 200 A 1 HETATM 26 O O2A ACO . . . B 2 49.816 33.373 24.858 1 9.48 ? O2A ACO 200 A 1 HETATM 27 O O3A ACO . . . B 2 50.529 30.978 25.253 1 5.2 ? O3A ACO 200 A 1 HETATM 28 P P2A ACO . . . B 2 50.518 30.612 26.81 1 9.78 ? P2A ACO 200 A 1 HETATM 29 O O4A ACO . . . B 2 50.354 29.157 26.933 1 6.12 ? O4A ACO 200 A 1 HETATM 30 O O5A ACO . . . B 2 49.598 31.524 27.506 1 10.67 ? O5A ACO 200 A 1 HETATM 31 O O6A ACO . . . B 2 52.014 30.998 27.269 1 5.33 ? O6A ACO 200 A 1 HETATM 32 C CBP ACO . . . B 2 54.119 29.926 27.621 1 8.28 ? CBP ACO 200 A 1 HETATM 33 C CCP ACO . . . B 2 53.174 30.497 26.588 1 4.94 ? CCP ACO 200 A 1 HETATM 34 C CDP ACO . . . B 2 55.348 29.295 26.943 1 2 ? CDP ACO 200 A 1 HETATM 35 C CEP ACO . . . B 2 54.571 31.044 28.593 1 5.82 ? CEP ACO 200 A 1 HETATM 36 C CAP ACO . . . B 2 53.323 28.863 28.386 1 6.79 ? CAP ACO 200 A 1 HETATM 37 O OAP ACO . . . B 2 52.889 27.792 27.529 1 14.47 ? OAP ACO 200 A 1 HETATM 38 C C9P ACO . . . B 2 54.122 28.385 29.585 1 12.51 ? C9P ACO 200 A 1 HETATM 39 O O9P ACO . . . B 2 54.063 28.998 30.653 1 11.52 ? O9P ACO 200 A 1 HETATM 40 N N8P ACO . . . B 2 54.866 27.296 29.401 1 12.24 ? N8P ACO 200 A 1 HETATM 41 C C7P ACO . . . B 2 55.644 26.644 30.437 1 11.37 ? C7P ACO 200 A 1 HETATM 42 C C6P ACO . . . B 2 56.832 27.491 30.876 1 19.83 ? C6P ACO 200 A 1 HETATM 43 C C5P ACO . . . B 2 57.826 27.755 29.757 1 26.6 ? C5P ACO 200 A 1 HETATM 44 O O5P ACO . . . B 2 58.151 26.841 28.983 1 19.82 ? O5P ACO 200 A 1 HETATM 45 N N4P ACO . . . B 2 58.321 29.003 29.681 1 27.3 ? N4P ACO 200 A 1 HETATM 46 C C3P ACO . . . B 2 59.511 29.341 28.936 1 36.94 ? C3P ACO 200 A 1 HETATM 47 C C2P ACO . . . B 2 59.904 30.79 29.101 1 40.63 ? C2P ACO 200 A 1 HETATM 48 S S1P ACO . . . B 2 61.691 30.964 29.026 1 56.07 ? S1P ACO 200 A 1 HETATM 49 C C ACO . . . B 2 62.008 31.747 30.618 1 52.36 ? C ACO 200 A 1 HETATM 50 O O ACO . . . B 2 62.232 31.066 31.632 1 54.56 ? O ACO 200 A 1 HETATM 51 C CH3 ACO . . . B 2 61.989 33.264 30.704 1 53.07 ? CH3 ACO 200 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 244 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 51 #