data_1B8F # _model_server_result.job_id 5veVI9OiHNNh7kOBHCAKEg _model_server_result.datetime_utc '2024-12-26 20:08:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b8f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":511}' # _entry.id 1B8F # _exptl.entry_id 1B8F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B8F _cell.length_a 79.267 _cell.length_b 116.788 _cell.length_c 129.532 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B8F _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_555 x,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 141 A GLY 141 1_555 A N1 MDO 142 A MDO 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale2 A C3 MDO 142 A MDO 142 1_555 A N ASP 143 A ASP 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.301 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1B8F _atom_sites.fract_transf_matrix[1][1] 0.012616 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008563 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00772 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 510 510 SO4 SO4 . C 3 GOL A 1 511 511 GOL GOL . D 4 HOH A 1 512 512 HOH HOH . D 4 HOH A 2 513 513 HOH HOH . D 4 HOH A 3 514 514 HOH HOH . D 4 HOH A 4 515 515 HOH HOH . D 4 HOH A 5 516 516 HOH HOH . D 4 HOH A 6 517 517 HOH HOH . D 4 HOH A 7 518 518 HOH HOH . D 4 HOH A 8 519 519 HOH HOH . D 4 HOH A 9 520 520 HOH HOH . D 4 HOH A 10 521 521 HOH HOH . D 4 HOH A 11 522 522 HOH HOH . D 4 HOH A 12 523 523 HOH HOH . D 4 HOH A 13 524 524 HOH HOH . D 4 HOH A 14 525 525 HOH HOH . D 4 HOH A 15 526 526 HOH HOH . D 4 HOH A 16 527 527 HOH HOH . D 4 HOH A 17 528 528 HOH HOH . D 4 HOH A 18 529 529 HOH HOH . D 4 HOH A 19 530 530 HOH HOH . D 4 HOH A 20 531 531 HOH HOH . D 4 HOH A 21 532 532 HOH HOH . D 4 HOH A 22 533 533 HOH HOH . D 4 HOH A 23 534 534 HOH HOH . D 4 HOH A 24 535 535 HOH HOH . D 4 HOH A 25 536 536 HOH HOH . D 4 HOH A 26 537 537 HOH HOH . D 4 HOH A 27 538 538 HOH HOH . D 4 HOH A 28 539 539 HOH HOH . D 4 HOH A 29 540 540 HOH HOH . D 4 HOH A 30 541 541 HOH HOH . D 4 HOH A 31 542 542 HOH HOH . D 4 HOH A 32 543 543 HOH HOH . D 4 HOH A 33 544 544 HOH HOH . D 4 HOH A 34 545 545 HOH HOH . D 4 HOH A 35 546 546 HOH HOH . D 4 HOH A 36 547 547 HOH HOH . D 4 HOH A 37 548 548 HOH HOH . D 4 HOH A 38 549 549 HOH HOH . D 4 HOH A 39 550 550 HOH HOH . D 4 HOH A 40 551 551 HOH HOH . D 4 HOH A 41 552 552 HOH HOH . D 4 HOH A 42 553 553 HOH HOH . D 4 HOH A 43 554 554 HOH HOH . D 4 HOH A 44 555 555 HOH HOH . D 4 HOH A 45 556 556 HOH HOH . D 4 HOH A 46 557 557 HOH HOH . D 4 HOH A 47 558 558 HOH HOH . D 4 HOH A 48 559 559 HOH HOH . D 4 HOH A 49 560 560 HOH HOH . D 4 HOH A 50 561 561 HOH HOH . D 4 HOH A 51 562 562 HOH HOH . D 4 HOH A 52 563 563 HOH HOH . D 4 HOH A 53 564 564 HOH HOH . D 4 HOH A 54 565 565 HOH HOH . D 4 HOH A 55 566 566 HOH HOH . D 4 HOH A 56 567 567 HOH HOH . D 4 HOH A 57 568 568 HOH HOH . D 4 HOH A 58 569 569 HOH HOH . D 4 HOH A 59 570 570 HOH HOH . D 4 HOH A 60 571 571 HOH HOH . D 4 HOH A 61 572 572 HOH HOH . D 4 HOH A 62 573 573 HOH HOH . D 4 HOH A 63 574 574 HOH HOH . D 4 HOH A 64 575 575 HOH HOH . D 4 HOH A 65 576 576 HOH HOH . D 4 HOH A 66 577 577 HOH HOH . D 4 HOH A 67 578 578 HOH HOH . D 4 HOH A 68 579 579 HOH HOH . D 4 HOH A 69 580 580 HOH HOH . D 4 HOH A 70 581 581 HOH HOH . D 4 HOH A 71 582 582 HOH HOH . D 4 HOH A 72 583 583 HOH HOH . D 4 HOH A 73 584 584 HOH HOH . D 4 HOH A 74 585 585 HOH HOH . D 4 HOH A 75 586 586 HOH HOH . D 4 HOH A 76 587 587 HOH HOH . D 4 HOH A 77 588 588 HOH HOH . D 4 HOH A 78 589 589 HOH HOH . D 4 HOH A 79 590 590 HOH HOH . D 4 HOH A 80 591 591 HOH HOH . D 4 HOH A 81 592 592 HOH HOH . D 4 HOH A 82 593 593 HOH HOH . D 4 HOH A 83 594 594 HOH HOH . D 4 HOH A 84 595 595 HOH HOH . D 4 HOH A 85 596 596 HOH HOH . D 4 HOH A 86 597 597 HOH HOH . D 4 HOH A 87 598 598 HOH HOH . D 4 HOH A 88 599 599 HOH HOH . D 4 HOH A 89 600 600 HOH HOH . D 4 HOH A 90 601 601 HOH HOH . D 4 HOH A 91 602 602 HOH HOH . D 4 HOH A 92 603 603 HOH HOH . D 4 HOH A 93 604 604 HOH HOH . D 4 HOH A 94 605 605 HOH HOH . D 4 HOH A 95 606 606 HOH HOH . D 4 HOH A 96 607 607 HOH HOH . D 4 HOH A 97 608 608 HOH HOH . D 4 HOH A 98 609 609 HOH HOH . D 4 HOH A 99 610 610 HOH HOH . D 4 HOH A 100 611 611 HOH HOH . D 4 HOH A 101 612 612 HOH HOH . D 4 HOH A 102 613 613 HOH HOH . D 4 HOH A 103 614 614 HOH HOH . D 4 HOH A 104 615 615 HOH HOH . D 4 HOH A 105 616 616 HOH HOH . D 4 HOH A 106 617 617 HOH HOH . D 4 HOH A 107 618 618 HOH HOH . D 4 HOH A 108 619 619 HOH HOH . D 4 HOH A 109 620 620 HOH HOH . D 4 HOH A 110 621 621 HOH HOH . D 4 HOH A 111 622 622 HOH HOH . D 4 HOH A 112 623 623 HOH HOH . D 4 HOH A 113 624 624 HOH HOH . D 4 HOH A 114 625 625 HOH HOH . D 4 HOH A 115 626 626 HOH HOH . D 4 HOH A 116 627 627 HOH HOH . D 4 HOH A 117 628 628 HOH HOH . D 4 HOH A 118 629 629 HOH HOH . D 4 HOH A 119 630 630 HOH HOH . D 4 HOH A 120 631 631 HOH HOH . D 4 HOH A 121 632 632 HOH HOH . D 4 HOH A 122 633 633 HOH HOH . D 4 HOH A 123 634 634 HOH HOH . D 4 HOH A 124 635 635 HOH HOH . D 4 HOH A 125 636 636 HOH HOH . D 4 HOH A 126 637 637 HOH HOH . D 4 HOH A 127 638 638 HOH HOH . D 4 HOH A 128 639 639 HOH HOH . D 4 HOH A 129 640 640 HOH HOH . D 4 HOH A 130 641 641 HOH HOH . D 4 HOH A 131 642 642 HOH HOH . D 4 HOH A 132 643 643 HOH HOH . D 4 HOH A 133 644 644 HOH HOH . D 4 HOH A 134 645 645 HOH HOH . D 4 HOH A 135 646 646 HOH HOH . D 4 HOH A 136 647 647 HOH HOH . D 4 HOH A 137 648 648 HOH HOH . D 4 HOH A 138 649 649 HOH HOH . D 4 HOH A 139 650 650 HOH HOH . D 4 HOH A 140 651 651 HOH HOH . D 4 HOH A 141 652 652 HOH HOH . D 4 HOH A 142 653 653 HOH HOH . D 4 HOH A 143 654 654 HOH HOH . D 4 HOH A 144 655 655 HOH HOH . D 4 HOH A 145 656 656 HOH HOH . D 4 HOH A 146 657 657 HOH HOH . D 4 HOH A 147 658 658 HOH HOH . D 4 HOH A 148 659 659 HOH HOH . D 4 HOH A 149 660 660 HOH HOH . D 4 HOH A 150 661 661 HOH HOH . D 4 HOH A 151 662 662 HOH HOH . D 4 HOH A 152 663 663 HOH HOH . D 4 HOH A 153 664 664 HOH HOH . D 4 HOH A 154 665 665 HOH HOH . D 4 HOH A 155 666 666 HOH HOH . D 4 HOH A 156 667 667 HOH HOH . D 4 HOH A 157 668 668 HOH HOH . D 4 HOH A 158 669 669 HOH HOH . D 4 HOH A 159 670 670 HOH HOH . D 4 HOH A 160 671 671 HOH HOH . D 4 HOH A 161 672 672 HOH HOH . D 4 HOH A 162 673 673 HOH HOH . D 4 HOH A 163 674 674 HOH HOH . D 4 HOH A 164 675 675 HOH HOH . D 4 HOH A 165 676 676 HOH HOH . D 4 HOH A 166 677 677 HOH HOH . D 4 HOH A 167 678 678 HOH HOH . D 4 HOH A 168 679 679 HOH HOH . D 4 HOH A 169 680 680 HOH HOH . D 4 HOH A 170 681 681 HOH HOH . D 4 HOH A 171 682 682 HOH HOH . D 4 HOH A 172 683 683 HOH HOH . D 4 HOH A 173 684 684 HOH HOH . D 4 HOH A 174 685 685 HOH HOH . D 4 HOH A 175 686 686 HOH HOH . D 4 HOH A 176 687 687 HOH HOH . D 4 HOH A 177 688 688 HOH HOH . D 4 HOH A 178 689 689 HOH HOH . D 4 HOH A 179 690 690 HOH HOH . D 4 HOH A 180 691 691 HOH HOH . D 4 HOH A 181 692 692 HOH HOH . D 4 HOH A 182 693 693 HOH HOH . D 4 HOH A 183 694 694 HOH HOH . D 4 HOH A 184 695 695 HOH HOH . D 4 HOH A 185 696 696 HOH HOH . D 4 HOH A 186 697 697 HOH HOH . D 4 HOH A 187 698 698 HOH HOH . D 4 HOH A 188 699 699 HOH HOH . D 4 HOH A 189 700 700 HOH HOH . D 4 HOH A 190 701 701 HOH HOH . D 4 HOH A 191 702 702 HOH HOH . D 4 HOH A 192 703 703 HOH HOH . D 4 HOH A 193 704 704 HOH HOH . D 4 HOH A 194 705 705 HOH HOH . D 4 HOH A 195 706 706 HOH HOH . D 4 HOH A 196 707 707 HOH HOH . D 4 HOH A 197 708 708 HOH HOH . D 4 HOH A 198 709 709 HOH HOH . D 4 HOH A 199 710 710 HOH HOH . D 4 HOH A 200 711 711 HOH HOH . D 4 HOH A 201 712 712 HOH HOH . D 4 HOH A 202 713 713 HOH HOH . D 4 HOH A 203 714 714 HOH HOH . D 4 HOH A 204 715 715 HOH HOH . D 4 HOH A 205 716 716 HOH HOH . D 4 HOH A 206 717 717 HOH HOH . D 4 HOH A 207 718 718 HOH HOH . D 4 HOH A 208 719 719 HOH HOH . D 4 HOH A 209 720 720 HOH HOH . D 4 HOH A 210 721 721 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 17.632 -30.766 16.242 1 28.33 ? C1 GOL 511 A 1 HETATM 2 O O1 GOL . . . C 3 18.584 -30.058 17.106 1 24.75 ? O1 GOL 511 A 1 HETATM 3 C C2 GOL . . . C 3 17.731 -32.285 16.434 1 30.67 ? C2 GOL 511 A 1 HETATM 4 O O2 GOL . . . C 3 16.477 -32.99 16.586 1 31.92 ? O2 GOL 511 A 1 HETATM 5 C C3 GOL . . . C 3 18.528 -32.643 17.722 1 31.33 ? C3 GOL 511 A 1 HETATM 6 O O3 GOL . . . C 3 17.738 -32.217 18.816 1 33.8 ? O3 GOL 511 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #