data_1B8U # _model_server_result.job_id C9fh-7usOOJhg4i6sEMVNQ _model_server_result.datetime_utc '2024-12-12 11:00:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b8u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":334}' # _entry.id 1B8U # _exptl.entry_id 1B8U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B8U _cell.length_a 58.3 _cell.length_b 101.7 _cell.length_c 52.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B8U _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 58.3 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1B8U _atom_sites.fract_transf_matrix[1][1] 0.017153 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 OAA A 1 350 350 OAA OXA . C 3 NAD A 1 334 334 NAD NAD . D 4 HOH A 1 351 1 HOH HOH . D 4 HOH A 2 352 2 HOH HOH . D 4 HOH A 3 353 3 HOH HOH . D 4 HOH A 4 354 4 HOH HOH . D 4 HOH A 5 355 5 HOH HOH . D 4 HOH A 6 356 6 HOH HOH . D 4 HOH A 7 357 7 HOH HOH . D 4 HOH A 8 358 8 HOH HOH . D 4 HOH A 9 359 9 HOH HOH . D 4 HOH A 10 360 10 HOH HOH . D 4 HOH A 11 361 11 HOH HOH . D 4 HOH A 12 362 12 HOH HOH . D 4 HOH A 13 363 13 HOH HOH . D 4 HOH A 14 364 14 HOH HOH . D 4 HOH A 15 365 15 HOH HOH . D 4 HOH A 16 366 16 HOH HOH . D 4 HOH A 17 367 17 HOH HOH . D 4 HOH A 18 368 18 HOH HOH . D 4 HOH A 19 369 19 HOH HOH . D 4 HOH A 20 370 20 HOH HOH . D 4 HOH A 21 371 21 HOH HOH . D 4 HOH A 22 372 22 HOH HOH . D 4 HOH A 23 373 23 HOH HOH . D 4 HOH A 24 374 24 HOH HOH . D 4 HOH A 25 375 25 HOH HOH . D 4 HOH A 26 376 26 HOH HOH . D 4 HOH A 27 377 27 HOH HOH . D 4 HOH A 28 378 28 HOH HOH . D 4 HOH A 29 379 29 HOH HOH . D 4 HOH A 30 380 30 HOH HOH . D 4 HOH A 31 381 31 HOH HOH . D 4 HOH A 32 382 32 HOH HOH . D 4 HOH A 33 383 33 HOH HOH . D 4 HOH A 34 384 34 HOH HOH . D 4 HOH A 35 385 35 HOH HOH . D 4 HOH A 36 386 36 HOH HOH . D 4 HOH A 37 387 37 HOH HOH . D 4 HOH A 38 388 38 HOH HOH . D 4 HOH A 39 389 39 HOH HOH . D 4 HOH A 40 390 40 HOH HOH . D 4 HOH A 41 391 41 HOH HOH . D 4 HOH A 42 392 42 HOH HOH . D 4 HOH A 43 393 43 HOH HOH . D 4 HOH A 44 394 44 HOH HOH . D 4 HOH A 45 395 45 HOH HOH . D 4 HOH A 46 396 46 HOH HOH . D 4 HOH A 47 397 47 HOH HOH . D 4 HOH A 48 398 48 HOH HOH . D 4 HOH A 49 399 49 HOH HOH . D 4 HOH A 50 400 50 HOH HOH . D 4 HOH A 51 401 51 HOH HOH . D 4 HOH A 52 402 52 HOH HOH . D 4 HOH A 53 403 53 HOH HOH . D 4 HOH A 54 404 54 HOH HOH . D 4 HOH A 55 405 55 HOH HOH . D 4 HOH A 56 406 56 HOH HOH . D 4 HOH A 57 407 59 HOH HOH . D 4 HOH A 58 408 61 HOH HOH . D 4 HOH A 59 409 62 HOH HOH . D 4 HOH A 60 410 65 HOH HOH . D 4 HOH A 61 411 66 HOH HOH . D 4 HOH A 62 412 67 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . C 3 27.792 9.525 26.99 1 25.17 ? PA NAD 334 A 1 HETATM 2 O O1A NAD . . . C 3 27.745 10.041 25.602 1 26.17 ? O1A NAD 334 A 1 HETATM 3 O O2A NAD . . . C 3 27.827 8.063 27.193 1 21.8 ? O2A NAD 334 A 1 HETATM 4 O O5B NAD . . . C 3 26.651 10.288 27.836 1 25.48 ? O5B NAD 334 A 1 HETATM 5 C C5B NAD . . . C 3 26.391 11.694 27.758 1 22.47 ? C5B NAD 334 A 1 HETATM 6 C C4B NAD . . . C 3 24.893 11.73 27.972 1 26.57 ? C4B NAD 334 A 1 HETATM 7 O O4B NAD . . . C 3 24.423 13.049 28.272 1 25.83 ? O4B NAD 334 A 1 HETATM 8 C C3B NAD . . . C 3 24.206 11.269 26.693 1 26.35 ? C3B NAD 334 A 1 HETATM 9 O O3B NAD . . . C 3 23.421 10.085 26.876 1 32.2 ? O3B NAD 334 A 1 HETATM 10 C C2B NAD . . . C 3 23.392 12.463 26.217 1 25.33 ? C2B NAD 334 A 1 HETATM 11 O O2B NAD . . . C 3 22.189 12.096 25.514 1 17.83 ? O2B NAD 334 A 1 HETATM 12 C C1B NAD . . . C 3 23.205 13.252 27.514 1 28 ? C1B NAD 334 A 1 HETATM 13 N N9A NAD . . . C 3 22.938 14.722 27.31 1 30.77 ? N9A NAD 334 A 1 HETATM 14 C C8A NAD . . . C 3 23.35 15.487 26.269 1 26.52 ? C8A NAD 334 A 1 HETATM 15 N N7A NAD . . . C 3 22.873 16.724 26.392 1 24.25 ? N7A NAD 334 A 1 HETATM 16 C C5A NAD . . . C 3 22.2 16.691 27.54 1 29.12 ? C5A NAD 334 A 1 HETATM 17 C C6A NAD . . . C 3 21.452 17.723 28.023 1 30.18 ? C6A NAD 334 A 1 HETATM 18 N N6A NAD . . . C 3 21.347 18.83 27.297 1 33.86 ? N6A NAD 334 A 1 HETATM 19 N N1A NAD . . . C 3 20.721 17.506 29.14 1 27.31 ? N1A NAD 334 A 1 HETATM 20 C C2A NAD . . . C 3 20.711 16.318 29.738 1 26.11 ? C2A NAD 334 A 1 HETATM 21 N N3A NAD . . . C 3 21.426 15.306 29.242 1 30.59 ? N3A NAD 334 A 1 HETATM 22 C C4A NAD . . . C 3 22.192 15.481 28.129 1 29.47 ? C4A NAD 334 A 1 HETATM 23 O O3 NAD . . . C 3 28.992 10.206 27.799 1 24.13 ? O3 NAD 334 A 1 HETATM 24 P PN NAD . . . C 3 29.936 9.87 29.002 1 21.85 ? PN NAD 334 A 1 HETATM 25 O O1N NAD . . . C 3 31.038 9.005 28.506 1 28.64 ? O1N NAD 334 A 1 HETATM 26 O O2N NAD . . . C 3 29.248 9.431 30.215 1 27.51 ? O2N NAD 334 A 1 HETATM 27 O O5D NAD . . . C 3 30.508 11.331 29.165 1 25.51 ? O5D NAD 334 A 1 HETATM 28 C C5D NAD . . . C 3 29.743 12.41 29.744 1 24.82 ? C5D NAD 334 A 1 HETATM 29 C C4D NAD . . . C 3 30.652 13.619 29.965 1 22.46 ? C4D NAD 334 A 1 HETATM 30 O O4D NAD . . . C 3 31.722 13.201 30.84 1 19.89 ? O4D NAD 334 A 1 HETATM 31 C C3D NAD . . . C 3 31.349 14.089 28.686 1 23.62 ? C3D NAD 334 A 1 HETATM 32 O O3D NAD . . . C 3 31.313 15.524 28.497 1 19.91 ? O3D NAD 334 A 1 HETATM 33 C C2D NAD . . . C 3 32.736 13.454 28.841 1 20.68 ? C2D NAD 334 A 1 HETATM 34 O O2D NAD . . . C 3 33.777 13.926 27.984 1 23.7 ? O2D NAD 334 A 1 HETATM 35 C C1D NAD . . . C 3 32.948 13.711 30.298 1 17.87 ? C1D NAD 334 A 1 HETATM 36 N N1N NAD . . . C 3 34.137 13.152 30.971 1 20.13 ? N1N NAD 334 A 1 HETATM 37 C C2N NAD . . . C 3 34.474 13.825 32.144 1 18.41 ? C2N NAD 334 A 1 HETATM 38 C C3N NAD . . . C 3 35.421 13.294 32.996 1 21.77 ? C3N NAD 334 A 1 HETATM 39 C C7N NAD . . . C 3 35.762 14.11 34.237 1 24.42 ? C7N NAD 334 A 1 HETATM 40 O O7N NAD . . . C 3 36.768 13.883 34.892 1 26.32 ? O7N NAD 334 A 1 HETATM 41 N N7N NAD . . . C 3 34.862 15.015 34.607 1 27.65 ? N7N NAD 334 A 1 HETATM 42 C C4N NAD . . . C 3 36.008 12.054 32.707 1 21.78 ? C4N NAD 334 A 1 HETATM 43 C C5N NAD . . . C 3 35.687 11.361 31.528 1 24.03 ? C5N NAD 334 A 1 HETATM 44 C C6N NAD . . . C 3 34.776 11.934 30.633 1 21.42 ? C6N NAD 334 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 372 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #