data_1B8V # _model_server_result.job_id KV6nyTSR7TlaUpUow-rscg _model_server_result.datetime_utc '2024-12-06 07:52:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b8v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":334}' # _entry.id 1B8V # _exptl.entry_id 1B8V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B8V _cell.length_a 59.02 _cell.length_b 102.52 _cell.length_c 53.96 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B8V _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 59.02 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1B8V _atom_sites.fract_transf_matrix[1][1] 0.016943 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018532 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 334 334 NAD NAD . C 3 HOH A 1 335 1 HOH HOH . C 3 HOH A 2 336 4 HOH HOH . C 3 HOH A 3 337 5 HOH HOH . C 3 HOH A 4 338 6 HOH HOH . C 3 HOH A 5 339 7 HOH HOH . C 3 HOH A 6 340 8 HOH HOH . C 3 HOH A 7 341 9 HOH HOH . C 3 HOH A 8 342 10 HOH HOH . C 3 HOH A 9 343 11 HOH HOH . C 3 HOH A 10 344 12 HOH HOH . C 3 HOH A 11 345 13 HOH HOH . C 3 HOH A 12 346 14 HOH HOH . C 3 HOH A 13 347 15 HOH HOH . C 3 HOH A 14 348 16 HOH HOH . C 3 HOH A 15 349 17 HOH HOH . C 3 HOH A 16 350 18 HOH HOH . C 3 HOH A 17 351 19 HOH HOH . C 3 HOH A 18 352 20 HOH HOH . C 3 HOH A 19 353 21 HOH HOH . C 3 HOH A 20 354 22 HOH HOH . C 3 HOH A 21 355 23 HOH HOH . C 3 HOH A 22 356 24 HOH HOH . C 3 HOH A 23 357 25 HOH HOH . C 3 HOH A 24 358 26 HOH HOH . C 3 HOH A 25 359 27 HOH HOH . C 3 HOH A 26 360 28 HOH HOH . C 3 HOH A 27 361 29 HOH HOH . C 3 HOH A 28 362 30 HOH HOH . C 3 HOH A 29 363 31 HOH HOH . C 3 HOH A 30 364 32 HOH HOH . C 3 HOH A 31 365 33 HOH HOH . C 3 HOH A 32 366 34 HOH HOH . C 3 HOH A 33 367 35 HOH HOH . C 3 HOH A 34 368 37 HOH HOH . C 3 HOH A 35 369 38 HOH HOH . C 3 HOH A 36 370 39 HOH HOH . C 3 HOH A 37 371 40 HOH HOH . C 3 HOH A 38 372 41 HOH HOH . C 3 HOH A 39 373 42 HOH HOH . C 3 HOH A 40 374 43 HOH HOH . C 3 HOH A 41 375 44 HOH HOH . C 3 HOH A 42 376 45 HOH HOH . C 3 HOH A 43 377 46 HOH HOH . C 3 HOH A 44 378 48 HOH HOH . C 3 HOH A 45 379 49 HOH HOH . C 3 HOH A 46 380 50 HOH HOH . C 3 HOH A 47 381 51 HOH HOH . C 3 HOH A 48 382 52 HOH HOH . C 3 HOH A 49 383 53 HOH HOH . C 3 HOH A 50 384 54 HOH HOH . C 3 HOH A 51 385 55 HOH HOH . C 3 HOH A 52 386 57 HOH HOH . C 3 HOH A 53 387 59 HOH HOH . C 3 HOH A 54 388 60 HOH HOH . C 3 HOH A 55 389 61 HOH HOH . C 3 HOH A 56 390 63 HOH HOH . C 3 HOH A 57 391 64 HOH HOH . C 3 HOH A 58 392 65 HOH HOH . C 3 HOH A 59 393 66 HOH HOH . C 3 HOH A 60 394 67 HOH HOH . C 3 HOH A 61 395 68 HOH HOH . C 3 HOH A 62 396 70 HOH HOH . C 3 HOH A 63 397 71 HOH HOH . C 3 HOH A 64 398 72 HOH HOH . C 3 HOH A 65 399 73 HOH HOH . C 3 HOH A 66 400 74 HOH HOH . C 3 HOH A 67 401 76 HOH HOH . C 3 HOH A 68 402 77 HOH HOH . C 3 HOH A 69 403 78 HOH HOH . C 3 HOH A 70 404 82 HOH HOH . C 3 HOH A 71 405 84 HOH HOH . C 3 HOH A 72 406 85 HOH HOH . C 3 HOH A 73 407 86 HOH HOH . C 3 HOH A 74 408 89 HOH HOH . C 3 HOH A 75 409 91 HOH HOH . C 3 HOH A 76 410 92 HOH HOH . C 3 HOH A 77 411 97 HOH HOH . C 3 HOH A 78 412 98 HOH HOH . C 3 HOH A 79 413 99 HOH HOH . C 3 HOH A 80 414 102 HOH HOH . C 3 HOH A 81 415 106 HOH HOH . C 3 HOH A 82 416 108 HOH HOH . C 3 HOH A 83 417 109 HOH HOH . C 3 HOH A 84 418 110 HOH HOH . C 3 HOH A 85 419 112 HOH HOH . C 3 HOH A 86 420 113 HOH HOH . C 3 HOH A 87 421 120 HOH HOH . C 3 HOH A 88 422 124 HOH HOH . C 3 HOH A 89 423 131 HOH HOH . C 3 HOH A 90 424 132 HOH HOH . C 3 HOH A 91 425 133 HOH HOH . C 3 HOH A 92 426 134 HOH HOH . C 3 HOH A 93 427 135 HOH HOH . C 3 HOH A 94 428 138 HOH HOH . C 3 HOH A 95 429 146 HOH HOH . C 3 HOH A 96 430 149 HOH HOH . C 3 HOH A 97 431 154 HOH HOH . C 3 HOH A 98 432 155 HOH HOH . C 3 HOH A 99 433 164 HOH HOH . C 3 HOH A 100 434 166 HOH HOH . C 3 HOH A 101 435 173 HOH HOH . C 3 HOH A 102 436 176 HOH HOH . C 3 HOH A 103 437 177 HOH HOH . C 3 HOH A 104 438 182 HOH HOH . C 3 HOH A 105 439 183 HOH HOH . C 3 HOH A 106 440 184 HOH HOH . C 3 HOH A 107 441 185 HOH HOH . C 3 HOH A 108 442 188 HOH HOH . C 3 HOH A 109 443 190 HOH HOH . C 3 HOH A 110 444 193 HOH HOH . C 3 HOH A 111 445 215 HOH HOH . C 3 HOH A 112 446 216 HOH HOH . C 3 HOH A 113 447 217 HOH HOH . C 3 HOH A 114 448 218 HOH HOH . C 3 HOH A 115 449 219 HOH HOH . C 3 HOH A 116 450 220 HOH HOH . C 3 HOH A 117 451 223 HOH HOH . C 3 HOH A 118 452 226 HOH HOH . C 3 HOH A 119 453 227 HOH HOH . C 3 HOH A 120 454 229 HOH HOH . C 3 HOH A 121 455 230 HOH HOH . C 3 HOH A 122 456 232 HOH HOH . C 3 HOH A 123 457 233 HOH HOH . C 3 HOH A 124 458 234 HOH HOH . C 3 HOH A 125 459 236 HOH HOH . C 3 HOH A 126 460 238 HOH HOH . C 3 HOH A 127 461 242 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 28.277 9.724 27.827 1 27.64 ? PA NAD 334 A 1 HETATM 2 O O1A NAD . . . B 2 28.261 10.32 26.461 1 25.24 ? O1A NAD 334 A 1 HETATM 3 O O2A NAD . . . B 2 28.315 8.243 27.941 1 25.11 ? O2A NAD 334 A 1 HETATM 4 O O5B NAD . . . B 2 27.058 10.283 28.679 1 25.42 ? O5B NAD 334 A 1 HETATM 5 C C5B NAD . . . B 2 26.724 11.659 28.734 1 23.42 ? C5B NAD 334 A 1 HETATM 6 C C4B NAD . . . B 2 25.229 11.64 28.894 1 25.73 ? C4B NAD 334 A 1 HETATM 7 O O4B NAD . . . B 2 24.854 13.004 29.097 1 28.04 ? O4B NAD 334 A 1 HETATM 8 C C3B NAD . . . B 2 24.554 11.175 27.61 1 25.25 ? C3B NAD 334 A 1 HETATM 9 O O3B NAD . . . B 2 23.604 10.149 27.879 1 27.48 ? O3B NAD 334 A 1 HETATM 10 C C2B NAD . . . B 2 23.869 12.416 27.052 1 27.83 ? C2B NAD 334 A 1 HETATM 11 O O2B NAD . . . B 2 22.646 12.242 26.304 1 24.59 ? O2B NAD 334 A 1 HETATM 12 C C1B NAD . . . B 2 23.651 13.158 28.34 1 28.02 ? C1B NAD 334 A 1 HETATM 13 N N9A NAD . . . B 2 23.369 14.579 28.099 1 32.68 ? N9A NAD 334 A 1 HETATM 14 C C8A NAD . . . B 2 23.803 15.337 27.064 1 31.96 ? C8A NAD 334 A 1 HETATM 15 N N7A NAD . . . B 2 23.346 16.58 27.205 1 31.2 ? N7A NAD 334 A 1 HETATM 16 C C5A NAD . . . B 2 22.663 16.53 28.35 1 32.56 ? C5A NAD 334 A 1 HETATM 17 C C6A NAD . . . B 2 22.005 17.598 28.888 1 35.31 ? C6A NAD 334 A 1 HETATM 18 N N6A NAD . . . B 2 22.169 18.785 28.312 1 39 ? N6A NAD 334 A 1 HETATM 19 N N1A NAD . . . B 2 21.262 17.367 29.994 1 34.17 ? N1A NAD 334 A 1 HETATM 20 C C2A NAD . . . B 2 21.186 16.149 30.545 1 29.72 ? C2A NAD 334 A 1 HETATM 21 N N3A NAD . . . B 2 21.84 15.11 30.017 1 27.04 ? N3A NAD 334 A 1 HETATM 22 C C4A NAD . . . B 2 22.604 15.307 28.911 1 31.58 ? C4A NAD 334 A 1 HETATM 23 O O3 NAD . . . B 2 29.527 10.356 28.59 1 23.6 ? O3 NAD 334 A 1 HETATM 24 P PN NAD . . . B 2 30.272 10.01 29.922 1 25.23 ? PN NAD 334 A 1 HETATM 25 O O1N NAD . . . B 2 31.419 9.141 29.569 1 30.66 ? O1N NAD 334 A 1 HETATM 26 O O2N NAD . . . B 2 29.332 9.53 30.945 1 21.91 ? O2N NAD 334 A 1 HETATM 27 O O5D NAD . . . B 2 30.902 11.433 30.322 1 27.93 ? O5D NAD 334 A 1 HETATM 28 C C5D NAD . . . B 2 30.076 12.55 30.728 1 31.01 ? C5D NAD 334 A 1 HETATM 29 C C4D NAD . . . B 2 30.893 13.827 30.932 1 30.6 ? C4D NAD 334 A 1 HETATM 30 O O4D NAD . . . B 2 31.902 13.582 31.944 1 29.86 ? O4D NAD 334 A 1 HETATM 31 C C3D NAD . . . B 2 31.624 14.204 29.639 1 31.34 ? C3D NAD 334 A 1 HETATM 32 O O3D NAD . . . B 2 31.598 15.605 29.348 1 29.94 ? O3D NAD 334 A 1 HETATM 33 C C2D NAD . . . B 2 33.004 13.631 29.906 1 31.16 ? C2D NAD 334 A 1 HETATM 34 O O2D NAD . . . B 2 34.012 14.082 29.007 1 33.76 ? O2D NAD 334 A 1 HETATM 35 C C1D NAD . . . B 2 33.148 14.024 31.367 1 31.07 ? C1D NAD 334 A 1 HETATM 36 N N1N NAD . . . B 2 34.317 13.502 32.109 1 29.55 ? N1N NAD 334 A 1 HETATM 37 C C2N NAD . . . B 2 34.725 14.209 33.246 1 30.56 ? C2N NAD 334 A 1 HETATM 38 C C3N NAD . . . B 2 35.815 13.794 34.001 1 29.11 ? C3N NAD 334 A 1 HETATM 39 C C7N NAD . . . B 2 36.274 14.595 35.226 1 29.53 ? C7N NAD 334 A 1 HETATM 40 O O7N NAD . . . B 2 37.077 14.106 36.018 1 26.44 ? O7N NAD 334 A 1 HETATM 41 N N7N NAD . . . B 2 35.72 15.793 35.398 1 27.3 ? N7N NAD 334 A 1 HETATM 42 C C4N NAD . . . B 2 36.495 12.642 33.612 1 31.31 ? C4N NAD 334 A 1 HETATM 43 C C5N NAD . . . B 2 36.1 11.922 32.479 1 34.56 ? C5N NAD 334 A 1 HETATM 44 C C6N NAD . . . B 2 35.018 12.355 31.71 1 32.84 ? C6N NAD 334 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 44 #