data_1B8Y # _model_server_result.job_id wYI2SPtZX31gOvrn4ujxvg _model_server_result.datetime_utc '2024-10-24 04:35:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b8y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":502}' # _entry.id 1B8Y # _exptl.entry_id 1B8Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 374.454 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-ACETIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B8Y _cell.length_a 69.97 _cell.length_b 69.97 _cell.length_c 77.67 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B8Y _symmetry.cell_setting tetragonal _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 77.67 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 25 A ASP 107 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.634 ? metalc ? metalc2 A OD1 ASP 25 A ASP 107 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.239 ? metalc ? metalc3 A O ASP 59 A ASP 141 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc4 A NE2 HIS 69 A HIS 151 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc5 A OD2 ASP 71 A ASP 153 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.168 ? metalc ? metalc6 A OD1 ASP 76 A ASP 158 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc7 A O GLY 77 A GLY 159 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc8 A O GLY 79 A GLY 161 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc9 A O VAL 81 A VAL 163 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.44 ? metalc ? metalc10 A NE2 HIS 84 A HIS 166 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc11 A O GLY 91 A GLY 173 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc12 A O ASN 93 A ASN 175 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.437 ? metalc ? metalc13 A OD1 ASP 95 A ASP 177 1_555 E CA CA . A CA 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.49 ? metalc ? metalc14 A ND1 HIS 97 A HIS 179 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc15 A OD2 ASP 99 A ASP 181 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? metalc ? metalc16 A O ASP 100 A ASP 182 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.684 ? metalc ? metalc17 A OD1 ASP 100 A ASP 182 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.639 ? metalc ? metalc18 A OE2 GLU 102 A GLU 184 1_555 D CA CA . A CA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.421 ? metalc ? metalc19 A O GLU 102 A GLU 184 1_555 F CA CA . A CA 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.496 ? metalc ? metalc20 A NE2 HIS 119 A HIS 201 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc21 A NE2 HIS 123 A HIS 205 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc22 A NE2 HIS 129 A HIS 211 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.216 ? metalc ? metalc23 B ZN ZN . A ZN 301 1_555 H O4 IN7 . A IN7 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc24 E CA CA . A CA 304 1_555 I O HOH . A HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc25 E CA CA . A CA 304 1_555 I O HOH . A HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc26 F CA CA . A CA 305 1_555 I O HOH . A HOH 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? # _chem_comp.formula 'C19 H22 N2 O4 S' _chem_comp.formula_weight 374.454 _chem_comp.id IN7 _chem_comp.mon_nstd_flag . _chem_comp.name '[4-(4-PHENYL-PIPERIDIN-1-YL)-BENZENESULFONYLAMINO]-ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IN7 doub 160 n y C1 C6 IN7 sing 161 n y C1 N1 IN7 sing 162 n n C2 C3 IN7 sing 163 n y C2 H2 IN7 sing 164 n n C3 C4 IN7 doub 165 n y C3 H3 IN7 sing 166 n n C7 C11 IN7 sing 167 n n C7 C18 IN7 sing 168 n n C7 H71 IN7 sing 169 n n C7 H72 IN7 sing 170 n n C6 C5 IN7 doub 171 n y C6 H6 IN7 sing 172 n n O2 S IN7 doub 173 n n C4 C5 IN7 sing 174 n y C4 S IN7 sing 175 n n C5 H5 IN7 sing 176 n n O3 C9 IN7 sing 177 n n O3 HO3 IN7 sing 178 n n S O1 IN7 doub 179 n n S N2 IN7 sing 180 n n C11 C13 IN7 sing 181 n n C11 C16 IN7 sing 182 n n C11 H11 IN7 sing 183 n n C13 C15 IN7 sing 184 n n C13 H131 IN7 sing 185 n n C13 H132 IN7 sing 186 n n C15 N1 IN7 sing 187 n n C15 H151 IN7 sing 188 n n C15 H152 IN7 sing 189 n n N1 C18 IN7 sing 190 n n C18 H181 IN7 sing 191 n n C18 H182 IN7 sing 192 n n C10 C12 IN7 doub 193 n y C10 C19 IN7 sing 194 n y C10 H10 IN7 sing 195 n n C12 C14 IN7 sing 196 n y C12 H12 IN7 sing 197 n n C14 C16 IN7 doub 198 n y C14 H14 IN7 sing 199 n n C16 C17 IN7 sing 200 n y C17 C19 IN7 doub 201 n y C17 H17 IN7 sing 202 n n C19 H19 IN7 sing 203 n n N2 C8 IN7 sing 204 n n N2 HN2 IN7 sing 205 n n C8 C9 IN7 sing 206 n n C8 H81 IN7 sing 207 n n C8 H82 IN7 sing 208 n n C9 O4 IN7 doub 209 n n # _atom_sites.entry_id 1B8Y _atom_sites.fract_transf_matrix[1][1] 0.014292 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014292 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012875 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 CA A 1 303 303 CA CA . E 3 CA A 1 304 304 CA CA . F 3 CA A 1 305 305 CA CA . G 4 SO4 A 1 501 501 SO4 SO4 . H 5 IN7 A 1 502 502 IN7 IN7 . I 6 HOH A 1 401 401 HOH HOH . I 6 HOH A 2 402 402 HOH HOH . I 6 HOH A 3 403 403 HOH HOH . I 6 HOH A 4 404 404 HOH HOH . I 6 HOH A 5 405 405 HOH HOH . I 6 HOH A 6 406 406 HOH HOH . I 6 HOH A 7 407 407 HOH HOH . I 6 HOH A 8 408 408 HOH HOH . I 6 HOH A 9 409 409 HOH HOH . I 6 HOH A 10 410 410 HOH HOH . I 6 HOH A 11 411 411 HOH HOH . I 6 HOH A 12 412 412 HOH HOH . I 6 HOH A 13 413 413 HOH HOH . I 6 HOH A 14 414 414 HOH HOH . I 6 HOH A 15 415 415 HOH HOH . I 6 HOH A 16 416 416 HOH HOH . I 6 HOH A 17 417 417 HOH HOH . I 6 HOH A 18 418 418 HOH HOH . I 6 HOH A 19 419 419 HOH HOH . I 6 HOH A 20 420 420 HOH HOH . I 6 HOH A 21 421 421 HOH HOH . I 6 HOH A 22 422 422 HOH HOH . I 6 HOH A 23 423 423 HOH HOH . I 6 HOH A 24 424 424 HOH HOH . I 6 HOH A 25 425 425 HOH HOH . I 6 HOH A 26 426 426 HOH HOH . I 6 HOH A 27 427 427 HOH HOH . I 6 HOH A 28 428 428 HOH HOH . I 6 HOH A 29 429 429 HOH HOH . I 6 HOH A 30 430 430 HOH HOH . I 6 HOH A 31 431 431 HOH HOH . I 6 HOH A 32 432 432 HOH HOH . I 6 HOH A 33 433 433 HOH HOH . I 6 HOH A 34 434 434 HOH HOH . I 6 HOH A 35 435 435 HOH HOH . I 6 HOH A 36 436 436 HOH HOH . I 6 HOH A 37 437 437 HOH HOH . I 6 HOH A 38 438 438 HOH HOH . I 6 HOH A 39 439 439 HOH HOH . I 6 HOH A 40 440 440 HOH HOH . I 6 HOH A 41 441 441 HOH HOH . I 6 HOH A 42 442 442 HOH HOH . I 6 HOH A 43 443 443 HOH HOH . I 6 HOH A 44 444 444 HOH HOH . I 6 HOH A 45 445 445 HOH HOH . I 6 HOH A 46 446 446 HOH HOH . I 6 HOH A 47 447 447 HOH HOH . I 6 HOH A 48 448 448 HOH HOH . I 6 HOH A 49 449 449 HOH HOH . I 6 HOH A 50 450 450 HOH HOH . I 6 HOH A 51 451 451 HOH HOH . I 6 HOH A 52 452 452 HOH HOH . I 6 HOH A 53 453 453 HOH HOH . I 6 HOH A 54 454 454 HOH HOH . I 6 HOH A 55 455 455 HOH HOH . I 6 HOH A 56 456 456 HOH HOH . I 6 HOH A 57 457 457 HOH HOH . I 6 HOH A 58 458 458 HOH HOH . I 6 HOH A 59 459 459 HOH HOH . I 6 HOH A 60 460 460 HOH HOH . I 6 HOH A 61 461 461 HOH HOH . I 6 HOH A 62 462 462 HOH HOH . I 6 HOH A 63 463 463 HOH HOH . I 6 HOH A 64 464 464 HOH HOH . I 6 HOH A 65 465 465 HOH HOH . I 6 HOH A 66 466 466 HOH HOH . I 6 HOH A 67 467 467 HOH HOH . I 6 HOH A 68 468 468 HOH HOH . I 6 HOH A 69 469 469 HOH HOH . I 6 HOH A 70 470 470 HOH HOH . I 6 HOH A 71 471 471 HOH HOH . I 6 HOH A 72 472 472 HOH HOH . I 6 HOH A 73 473 473 HOH HOH . I 6 HOH A 74 474 474 HOH HOH . I 6 HOH A 75 475 475 HOH HOH . I 6 HOH A 76 476 476 HOH HOH . I 6 HOH A 77 477 477 HOH HOH . I 6 HOH A 78 478 478 HOH HOH . I 6 HOH A 79 479 479 HOH HOH . I 6 HOH A 80 480 480 HOH HOH . I 6 HOH A 81 481 481 HOH HOH . I 6 HOH A 82 482 482 HOH HOH . I 6 HOH A 83 483 483 HOH HOH . I 6 HOH A 84 484 484 HOH HOH . I 6 HOH A 85 485 485 HOH HOH . I 6 HOH A 86 486 486 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IN7 . . . H 5 16.437 8.111 18.835 1 15.87 ? C1 IN7 502 A 1 HETATM 2 C C2 IN7 . . . H 5 16.408 8.484 20.198 1 17.42 ? C2 IN7 502 A 1 HETATM 3 C C3 IN7 . . . H 5 15.9 7.609 21.162 1 18.4 ? C3 IN7 502 A 1 HETATM 4 C C7 IN7 . . . H 5 18.007 9.23 15.615 1 16.94 ? C7 IN7 502 A 1 HETATM 5 C C6 IN7 . . . H 5 15.904 6.86 18.439 1 17.91 ? C6 IN7 502 A 1 HETATM 6 O O2 IN7 . . . H 5 15.064 3.873 21.582 1 18.95 ? O2 IN7 502 A 1 HETATM 7 C C4 IN7 . . . H 5 15.457 6.339 20.764 1 18.75 ? C4 IN7 502 A 1 HETATM 8 C C5 IN7 . . . H 5 15.399 5.967 19.406 1 18.23 ? C5 IN7 502 A 1 HETATM 9 O O3 IN7 . . . H 5 11.828 7.358 21.489 1 17.08 ? O3 IN7 502 A 1 HETATM 10 S S IN7 . . . H 5 15.02 5.22 22.064 1 19.29 ? S IN7 502 A 1 HETATM 11 C C11 IN7 . . . H 5 18.583 10.551 16.106 1 18.48 ? C11 IN7 502 A 1 HETATM 12 C C13 IN7 . . . H 5 18.63 10.878 17.589 1 16.74 ? C13 IN7 502 A 1 HETATM 13 C C15 IN7 . . . H 5 17.454 10.317 18.362 1 13.51 ? C15 IN7 502 A 1 HETATM 14 N N1 IN7 . . . H 5 16.967 8.994 17.917 1 16.17 ? N1 IN7 502 A 1 HETATM 15 C C18 IN7 . . . H 5 16.852 8.725 16.473 1 16.59 ? C18 IN7 502 A 1 HETATM 16 C C10 IN7 . . . H 5 20.667 13.004 13.298 1 20.52 ? C10 IN7 502 A 1 HETATM 17 C C12 IN7 . . . H 5 21.251 12.738 14.549 1 19.96 ? C12 IN7 502 A 1 HETATM 18 C C14 IN7 . . . H 5 20.546 11.945 15.48 1 21.4 ? C14 IN7 502 A 1 HETATM 19 C C16 IN7 . . . H 5 19.27 11.432 15.151 1 20.02 ? C16 IN7 502 A 1 HETATM 20 C C17 IN7 . . . H 5 18.677 11.729 13.901 1 20.76 ? C17 IN7 502 A 1 HETATM 21 C C19 IN7 . . . H 5 19.387 12.512 12.965 1 21.55 ? C19 IN7 502 A 1 HETATM 22 O O1 IN7 . . . H 5 15.768 5.602 23.211 1 18.14 ? O1 IN7 502 A 1 HETATM 23 N N2 IN7 . . . H 5 13.427 5.473 22.658 1 19.6 ? N2 IN7 502 A 1 HETATM 24 C C8 IN7 . . . H 5 12.239 5.045 21.96 1 17.31 ? C8 IN7 502 A 1 HETATM 25 C C9 IN7 . . . H 5 11.814 6.106 21.018 1 16.73 ? C9 IN7 502 A 1 HETATM 26 O O4 IN7 . . . H 5 11.515 5.816 19.915 1 18.37 ? O4 IN7 502 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 268 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #