data_1B99 # _model_server_result.job_id BCNJ90ZDa1ZXUPdITNC9nw _model_server_result.datetime_utc '2025-02-18 02:07:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":160}' # _entry.id 1B99 # _exptl.entry_id 1B99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 390.153 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.43 _cell.angle_gamma 90 _cell.entry_id 1B99 _cell.length_a 70.02 _cell.length_b 105.31 _cell.length_c 70.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B99 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C9 H13 F N2 O10 P2' _chem_comp.formula_weight 390.153 _chem_comp.id FUP _chem_comp.mon_nstd_flag . _chem_comp.name "2',3'-DIDEOXY-3'-FLUORO-URIDIDINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms FUDP # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B FUP doub 70 n n PB O2B FUP sing 71 n n PB O3B FUP sing 72 n n PB O3A FUP sing 73 n n O2B HOB2 FUP sing 74 n n O3B HOB3 FUP sing 75 n n O3A PA FUP sing 76 n n PA O1A FUP doub 77 n n PA O2A FUP sing 78 n n PA O5' FUP sing 79 n n O2A HOA2 FUP sing 80 n n O5' C5' FUP sing 81 n n C5' C4' FUP sing 82 n n C5' "H5'1" FUP sing 83 n n C5' "H5'2" FUP sing 84 n n C4' O4' FUP sing 85 n n C4' C3' FUP sing 86 n n C4' H4' FUP sing 87 n n O4' C1' FUP sing 88 n n C3' F3' FUP sing 89 n n C3' C2' FUP sing 90 n n C3' H3' FUP sing 91 n n C2' C1' FUP sing 92 n n C2' "H2'1" FUP sing 93 n n C2' "H2'2" FUP sing 94 n n C1' N1 FUP sing 95 n n C1' H1' FUP sing 96 n n N1 C2 FUP sing 97 n n N1 C6 FUP sing 98 n n C2 O2 FUP doub 99 n n C2 N3 FUP sing 100 n n N3 C4 FUP sing 101 n n N3 HN3 FUP sing 102 n n C4 O4 FUP doub 103 n n C4 C5 FUP sing 104 n n C5 C6 FUP doub 105 n n C5 H5 FUP sing 106 n n C6 H6 FUP sing 107 n n # _atom_sites.entry_id 1B99 _atom_sites.fract_transf_matrix[1][1] 0.014282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FUP A 1 160 160 FUP FUP . H 3 POP B 1 260 260 POP POP . I 3 POP C 1 360 360 POP POP . J 3 POP D 1 460 460 POP POP . K 3 POP E 1 560 560 POP POP . L 3 POP F 1 660 660 POP POP . M 4 HOH A 1 210 210 HOH HOH . M 4 HOH A 2 214 214 HOH HOH . M 4 HOH A 3 215 215 HOH HOH . M 4 HOH A 4 216 216 HOH HOH . N 4 HOH B 1 200 200 HOH HOH . N 4 HOH B 2 217 217 HOH HOH . O 4 HOH C 1 201 201 HOH HOH . O 4 HOH C 2 203 203 HOH HOH . O 4 HOH C 3 218 218 HOH HOH . P 4 HOH D 1 202 202 HOH HOH . P 4 HOH D 2 204 204 HOH HOH . P 4 HOH D 3 205 205 HOH HOH . P 4 HOH D 4 211 211 HOH HOH . Q 4 HOH E 1 206 206 HOH HOH . Q 4 HOH E 2 207 207 HOH HOH . Q 4 HOH E 3 212 212 HOH HOH . R 4 HOH F 1 208 208 HOH HOH . R 4 HOH F 2 209 209 HOH HOH . R 4 HOH F 3 213 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB FUP . . . G 2 4.09 -20.266 5.354 1 16.05 ? PB FUP 160 A 1 HETATM 2 O O1B FUP . . . G 2 5.212 -19.961 6.244 1 21.18 ? O1B FUP 160 A 1 HETATM 3 O O2B FUP . . . G 2 3.22 -19.077 5.204 1 18.33 ? O2B FUP 160 A 1 HETATM 4 O O3B FUP . . . G 2 4.453 -20.887 4.073 1 17.38 ? O3B FUP 160 A 1 HETATM 5 O O3A FUP . . . G 2 3.169 -21.331 6.092 1 22.2 ? O3A FUP 160 A 1 HETATM 6 P PA FUP . . . G 2 1.992 -22.254 5.587 1 20.76 ? PA FUP 160 A 1 HETATM 7 O O1A FUP . . . G 2 2.152 -22.401 4.125 1 21.86 ? O1A FUP 160 A 1 HETATM 8 O O2A FUP . . . G 2 1.967 -23.467 6.424 1 21.36 ? O2A FUP 160 A 1 HETATM 9 O O5' FUP . . . G 2 0.685 -21.372 5.914 1 17.95 ? O5' FUP 160 A 1 HETATM 10 C C5' FUP . . . G 2 0.026 -20.556 4.919 1 19.48 ? C5' FUP 160 A 1 HETATM 11 C C4' FUP . . . G 2 -0.85 -19.581 5.624 1 20.93 ? C4' FUP 160 A 1 HETATM 12 O O4' FUP . . . G 2 -1.463 -20.219 6.744 1 24.31 ? O4' FUP 160 A 1 HETATM 13 C C3' FUP . . . G 2 -0.014 -18.469 6.203 1 21.8 ? C3' FUP 160 A 1 HETATM 14 F F3' FUP . . . G 2 -0.173 -17.294 5.43 1 19.18 ? F3' FUP 160 A 1 HETATM 15 C C2' FUP . . . G 2 -0.377 -18.461 7.701 1 23.41 ? C2' FUP 160 A 1 HETATM 16 C C1' FUP . . . G 2 -1.662 -19.29 7.83 1 23.82 ? C1' FUP 160 A 1 HETATM 17 N N1 FUP . . . G 2 -1.963 -20.068 9.106 1 28.23 ? N1 FUP 160 A 1 HETATM 18 C C2 FUP . . . G 2 -3.14 -19.809 9.843 1 28.23 ? C2 FUP 160 A 1 HETATM 19 O O2 FUP . . . G 2 -3.843 -18.819 9.731 1 28.23 ? O2 FUP 160 A 1 HETATM 20 N N3 FUP . . . G 2 -3.527 -20.723 10.776 1 28.23 ? N3 FUP 160 A 1 HETATM 21 C C4 FUP . . . G 2 -2.878 -21.917 11.035 1 28.23 ? C4 FUP 160 A 1 HETATM 22 O O4 FUP . . . G 2 -3.326 -22.672 11.888 1 28.23 ? O4 FUP 160 A 1 HETATM 23 C C5 FUP . . . G 2 -1.684 -22.159 10.25 1 28.23 ? C5 FUP 160 A 1 HETATM 24 C C6 FUP . . . G 2 -1.26 -21.231 9.36 1 28.23 ? C6 FUP 160 A 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 293 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #