data_1B99 # _model_server_result.job_id 8TZIDo88Z_YnH0W9ogiKZg _model_server_result.datetime_utc '2024-11-28 21:06:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b99 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":460}' # _entry.id 1B99 # _exptl.entry_id 1B99 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.43 _cell.angle_gamma 90 _cell.entry_id 1B99 _cell.length_a 70.02 _cell.length_b 105.31 _cell.length_c 70.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B99 _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 285 n n P1 O2 POP sing 286 n n P1 O3 POP sing 287 n n P1 O POP sing 288 n n O2 HO2 POP sing 289 n n O P2 POP sing 290 n n P2 O4 POP doub 291 n n P2 O5 POP sing 292 n n P2 O6 POP sing 293 n n O5 HO5 POP sing 294 n n # _atom_sites.entry_id 1B99 _atom_sites.fract_transf_matrix[1][1] 0.014282 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007412 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009496 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016015 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 FUP A 1 160 160 FUP FUP . H 3 POP B 1 260 260 POP POP . I 3 POP C 1 360 360 POP POP . J 3 POP D 1 460 460 POP POP . K 3 POP E 1 560 560 POP POP . L 3 POP F 1 660 660 POP POP . M 4 HOH A 1 210 210 HOH HOH . M 4 HOH A 2 214 214 HOH HOH . M 4 HOH A 3 215 215 HOH HOH . M 4 HOH A 4 216 216 HOH HOH . N 4 HOH B 1 200 200 HOH HOH . N 4 HOH B 2 217 217 HOH HOH . O 4 HOH C 1 201 201 HOH HOH . O 4 HOH C 2 203 203 HOH HOH . O 4 HOH C 3 218 218 HOH HOH . P 4 HOH D 1 202 202 HOH HOH . P 4 HOH D 2 204 204 HOH HOH . P 4 HOH D 3 205 205 HOH HOH . P 4 HOH D 4 211 211 HOH HOH . Q 4 HOH E 1 206 206 HOH HOH . Q 4 HOH E 2 207 207 HOH HOH . Q 4 HOH E 3 212 212 HOH HOH . R 4 HOH F 1 208 208 HOH HOH . R 4 HOH F 2 209 209 HOH HOH . R 4 HOH F 3 213 213 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . J 3 14.767 21.705 -9.234 0.59 32.35 ? P1 POP 460 D 1 HETATM 2 O O1 POP . . . J 3 13.365 22.146 -9.122 0.59 32.35 ? O1 POP 460 D 1 HETATM 3 O O2 POP . . . J 3 15.798 22.675 -9.692 0.59 32.35 ? O2 POP 460 D 1 HETATM 4 O O3 POP . . . J 3 14.823 20.429 -10.215 0.59 32.35 ? O3 POP 460 D 1 HETATM 5 O O POP . . . J 3 15.229 21.106 -7.802 0.59 32.35 ? O POP 460 D 1 HETATM 6 P P2 POP . . . J 3 14.549 20.037 -6.791 0.59 32.35 ? P2 POP 460 D 1 HETATM 7 O O4 POP . . . J 3 14.977 18.688 -7.247 0.59 32.35 ? O4 POP 460 D 1 HETATM 8 O O5 POP . . . J 3 13.085 20.256 -6.92 0.59 32.35 ? O5 POP 460 D 1 HETATM 9 O O6 POP . . . J 3 15.059 20.32 -5.436 0.59 32.35 ? O6 POP 460 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 9 #