data_1B9N # _model_server_result.job_id kfws8LU92uJHv3dvab8Zhw _model_server_result.datetime_utc '2025-02-27 06:25:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":263}' # _entry.id 1B9N # _exptl.entry_id 1B9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B9N _cell.length_a 81.11 _cell.length_b 127.36 _cell.length_c 62.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 142 A ASP 139 1_555 C NI NI . A NI 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc2 A NE2 HIS 143 A HIS 140 1_555 C NI NI . A NI 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? metalc ? metalc3 A NE2 HIS 149 A HIS 146 1_555 C NI NI . A NI 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.797 ? metalc ? metalc4 A OD1 ASP 151 A ASP 148 1_555 C NI NI . A NI 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.454 ? metalc ? metalc5 A OD2 ASP 151 A ASP 148 1_555 C NI NI . A NI 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.553 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1B9N _atom_sites.fract_transf_matrix[1][1] 0.012329 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007852 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015886 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NI A 1 263 263 NI NI . D 3 HOH A 1 264 1 HOH HOH . D 3 HOH A 2 265 2 HOH HOH . D 3 HOH A 3 266 3 HOH HOH . D 3 HOH A 4 267 4 HOH HOH . D 3 HOH A 5 268 5 HOH HOH . D 3 HOH A 6 269 6 HOH HOH . D 3 HOH A 7 270 7 HOH HOH . D 3 HOH A 8 271 8 HOH HOH . D 3 HOH A 9 272 9 HOH HOH . D 3 HOH A 10 273 10 HOH HOH . D 3 HOH A 11 274 11 HOH HOH . D 3 HOH A 12 275 12 HOH HOH . D 3 HOH A 13 276 31 HOH HOH . D 3 HOH A 14 277 32 HOH HOH . D 3 HOH A 15 278 34 HOH HOH . D 3 HOH A 16 279 35 HOH HOH . D 3 HOH A 17 280 36 HOH HOH . D 3 HOH A 18 281 37 HOH HOH . D 3 HOH A 19 282 38 HOH HOH . D 3 HOH A 20 283 39 HOH HOH . D 3 HOH A 21 284 40 HOH HOH . D 3 HOH A 22 285 41 HOH HOH . D 3 HOH A 23 286 42 HOH HOH . D 3 HOH A 24 287 43 HOH HOH . D 3 HOH A 25 288 44 HOH HOH . D 3 HOH A 26 289 45 HOH HOH . D 3 HOH A 27 290 48 HOH HOH . D 3 HOH A 28 291 49 HOH HOH . D 3 HOH A 29 292 51 HOH HOH . D 3 HOH A 30 293 53 HOH HOH . D 3 HOH A 31 294 54 HOH HOH . D 3 HOH A 32 295 55 HOH HOH . D 3 HOH A 33 296 56 HOH HOH . D 3 HOH A 34 297 57 HOH HOH . D 3 HOH A 35 298 59 HOH HOH . D 3 HOH A 36 299 60 HOH HOH . D 3 HOH A 37 300 62 HOH HOH . D 3 HOH A 38 301 63 HOH HOH . D 3 HOH A 39 302 64 HOH HOH . D 3 HOH A 40 303 65 HOH HOH . D 3 HOH A 41 304 66 HOH HOH . D 3 HOH A 42 305 67 HOH HOH . D 3 HOH A 43 306 68 HOH HOH . D 3 HOH A 44 307 69 HOH HOH . D 3 HOH A 45 308 70 HOH HOH . D 3 HOH A 46 309 71 HOH HOH . D 3 HOH A 47 310 72 HOH HOH . D 3 HOH A 48 311 73 HOH HOH . D 3 HOH A 49 312 74 HOH HOH . D 3 HOH A 50 313 75 HOH HOH . D 3 HOH A 51 314 76 HOH HOH . D 3 HOH A 52 315 77 HOH HOH . D 3 HOH A 53 316 78 HOH HOH . D 3 HOH A 54 317 79 HOH HOH . D 3 HOH A 55 318 80 HOH HOH . D 3 HOH A 56 319 81 HOH HOH . D 3 HOH A 57 320 82 HOH HOH . D 3 HOH A 58 321 83 HOH HOH . D 3 HOH A 59 322 84 HOH HOH . D 3 HOH A 60 323 85 HOH HOH . D 3 HOH A 61 324 86 HOH HOH . D 3 HOH A 62 325 87 HOH HOH . D 3 HOH A 63 326 88 HOH HOH . D 3 HOH A 64 327 89 HOH HOH . D 3 HOH A 65 328 90 HOH HOH . D 3 HOH A 66 329 91 HOH HOH . D 3 HOH A 67 330 92 HOH HOH . D 3 HOH A 68 331 93 HOH HOH . D 3 HOH A 69 332 94 HOH HOH . D 3 HOH A 70 333 95 HOH HOH . D 3 HOH A 71 334 96 HOH HOH . D 3 HOH A 72 335 97 HOH HOH . D 3 HOH A 73 336 99 HOH HOH . D 3 HOH A 74 337 100 HOH HOH . D 3 HOH A 75 338 101 HOH HOH . D 3 HOH A 76 339 102 HOH HOH . D 3 HOH A 77 340 103 HOH HOH . D 3 HOH A 78 341 111 HOH HOH . D 3 HOH A 79 342 115 HOH HOH . D 3 HOH A 80 343 123 HOH HOH . D 3 HOH A 81 344 127 HOH HOH . D 3 HOH A 82 345 129 HOH HOH . D 3 HOH A 83 346 130 HOH HOH . D 3 HOH A 84 347 131 HOH HOH . D 3 HOH A 85 348 148 HOH HOH . D 3 HOH A 86 349 150 HOH HOH . D 3 HOH A 87 350 151 HOH HOH . D 3 HOH A 88 351 152 HOH HOH . D 3 HOH A 89 352 153 HOH HOH . D 3 HOH A 90 353 154 HOH HOH . D 3 HOH A 91 354 155 HOH HOH . D 3 HOH A 92 355 156 HOH HOH . D 3 HOH A 93 356 157 HOH HOH . D 3 HOH A 94 357 158 HOH HOH . D 3 HOH A 95 358 159 HOH HOH . D 3 HOH A 96 359 160 HOH HOH . D 3 HOH A 97 360 161 HOH HOH . D 3 HOH A 98 361 162 HOH HOH . D 3 HOH A 99 362 163 HOH HOH . D 3 HOH A 100 363 164 HOH HOH . D 3 HOH A 101 364 165 HOH HOH . D 3 HOH A 102 365 166 HOH HOH . D 3 HOH A 103 366 167 HOH HOH . D 3 HOH A 104 367 168 HOH HOH . D 3 HOH A 105 368 182 HOH HOH . D 3 HOH A 106 369 183 HOH HOH . D 3 HOH A 107 370 184 HOH HOH . D 3 HOH A 108 371 185 HOH HOH . D 3 HOH A 109 372 187 HOH HOH . D 3 HOH A 110 373 188 HOH HOH . D 3 HOH A 111 374 189 HOH HOH . D 3 HOH A 112 375 190 HOH HOH . D 3 HOH A 113 376 191 HOH HOH . D 3 HOH A 114 377 192 HOH HOH . D 3 HOH A 115 378 193 HOH HOH . D 3 HOH A 116 379 194 HOH HOH . D 3 HOH A 117 380 195 HOH HOH . D 3 HOH A 118 381 196 HOH HOH . D 3 HOH A 119 382 197 HOH HOH . D 3 HOH A 120 383 198 HOH HOH . D 3 HOH A 121 384 199 HOH HOH . D 3 HOH A 122 385 200 HOH HOH . D 3 HOH A 123 386 201 HOH HOH . D 3 HOH A 124 387 202 HOH HOH . D 3 HOH A 125 388 222 HOH HOH . D 3 HOH A 126 389 223 HOH HOH . D 3 HOH A 127 390 224 HOH HOH . D 3 HOH A 128 391 225 HOH HOH . D 3 HOH A 129 392 226 HOH HOH . D 3 HOH A 130 393 227 HOH HOH . D 3 HOH A 131 394 228 HOH HOH . D 3 HOH A 132 395 229 HOH HOH . D 3 HOH A 133 396 230 HOH HOH . D 3 HOH A 134 397 231 HOH HOH . D 3 HOH A 135 398 232 HOH HOH . D 3 HOH A 136 399 233 HOH HOH . D 3 HOH A 137 400 234 HOH HOH . D 3 HOH A 138 401 235 HOH HOH . D 3 HOH A 139 402 236 HOH HOH . D 3 HOH A 140 403 237 HOH HOH . D 3 HOH A 141 404 238 HOH HOH . D 3 HOH A 142 405 239 HOH HOH . D 3 HOH A 143 406 240 HOH HOH . D 3 HOH A 144 407 241 HOH HOH . D 3 HOH A 145 408 242 HOH HOH . D 3 HOH A 146 409 243 HOH HOH . D 3 HOH A 147 410 244 HOH HOH . D 3 HOH A 148 411 245 HOH HOH . D 3 HOH A 149 412 246 HOH HOH . D 3 HOH A 150 413 279 HOH HOH . D 3 HOH A 151 414 280 HOH HOH . D 3 HOH A 152 415 281 HOH HOH . D 3 HOH A 153 416 282 HOH HOH . D 3 HOH A 154 417 283 HOH HOH . D 3 HOH A 155 418 286 HOH HOH . D 3 HOH A 156 419 287 HOH HOH . D 3 HOH A 157 420 288 HOH HOH . D 3 HOH A 158 421 289 HOH HOH . D 3 HOH A 159 422 290 HOH HOH . D 3 HOH A 160 423 291 HOH HOH . D 3 HOH A 161 424 292 HOH HOH . D 3 HOH A 162 425 294 HOH HOH . D 3 HOH A 163 426 295 HOH HOH . D 3 HOH A 164 427 296 HOH HOH . D 3 HOH A 165 428 297 HOH HOH . D 3 HOH A 166 429 298 HOH HOH . D 3 HOH A 167 430 299 HOH HOH . D 3 HOH A 168 431 304 HOH HOH . D 3 HOH A 169 432 305 HOH HOH . D 3 HOH A 170 433 308 HOH HOH . D 3 HOH A 171 434 309 HOH HOH . E 3 HOH B 1 263 13 HOH HOH . E 3 HOH B 2 264 14 HOH HOH . E 3 HOH B 3 265 15 HOH HOH . E 3 HOH B 4 266 16 HOH HOH . E 3 HOH B 5 267 17 HOH HOH . E 3 HOH B 6 268 18 HOH HOH . E 3 HOH B 7 269 19 HOH HOH . E 3 HOH B 8 270 20 HOH HOH . E 3 HOH B 9 271 21 HOH HOH . E 3 HOH B 10 272 22 HOH HOH . E 3 HOH B 11 273 23 HOH HOH . E 3 HOH B 12 274 24 HOH HOH . E 3 HOH B 13 275 25 HOH HOH . E 3 HOH B 14 276 26 HOH HOH . E 3 HOH B 15 277 27 HOH HOH . E 3 HOH B 16 278 28 HOH HOH . E 3 HOH B 17 279 29 HOH HOH . E 3 HOH B 18 280 30 HOH HOH . E 3 HOH B 19 281 33 HOH HOH . E 3 HOH B 20 282 46 HOH HOH . E 3 HOH B 21 283 47 HOH HOH . E 3 HOH B 22 284 50 HOH HOH . E 3 HOH B 23 285 52 HOH HOH . E 3 HOH B 24 286 58 HOH HOH . E 3 HOH B 25 287 61 HOH HOH . E 3 HOH B 26 288 98 HOH HOH . E 3 HOH B 27 289 104 HOH HOH . E 3 HOH B 28 290 105 HOH HOH . E 3 HOH B 29 291 106 HOH HOH . E 3 HOH B 30 292 107 HOH HOH . E 3 HOH B 31 293 108 HOH HOH . E 3 HOH B 32 294 109 HOH HOH . E 3 HOH B 33 295 110 HOH HOH . E 3 HOH B 34 296 112 HOH HOH . E 3 HOH B 35 297 113 HOH HOH . E 3 HOH B 36 298 114 HOH HOH . E 3 HOH B 37 299 116 HOH HOH . E 3 HOH B 38 300 117 HOH HOH . E 3 HOH B 39 301 118 HOH HOH . E 3 HOH B 40 302 119 HOH HOH . E 3 HOH B 41 303 120 HOH HOH . E 3 HOH B 42 304 121 HOH HOH . E 3 HOH B 43 305 122 HOH HOH . E 3 HOH B 44 306 124 HOH HOH . E 3 HOH B 45 307 125 HOH HOH . E 3 HOH B 46 308 126 HOH HOH . E 3 HOH B 47 309 128 HOH HOH . E 3 HOH B 48 310 132 HOH HOH . E 3 HOH B 49 311 133 HOH HOH . E 3 HOH B 50 312 134 HOH HOH . E 3 HOH B 51 313 135 HOH HOH . E 3 HOH B 52 314 136 HOH HOH . E 3 HOH B 53 315 137 HOH HOH . E 3 HOH B 54 316 138 HOH HOH . E 3 HOH B 55 317 139 HOH HOH . E 3 HOH B 56 318 140 HOH HOH . E 3 HOH B 57 319 141 HOH HOH . E 3 HOH B 58 320 142 HOH HOH . E 3 HOH B 59 321 143 HOH HOH . E 3 HOH B 60 322 144 HOH HOH . E 3 HOH B 61 323 145 HOH HOH . E 3 HOH B 62 324 146 HOH HOH . E 3 HOH B 63 325 147 HOH HOH . E 3 HOH B 64 326 149 HOH HOH . E 3 HOH B 65 327 169 HOH HOH . E 3 HOH B 66 328 170 HOH HOH . E 3 HOH B 67 329 171 HOH HOH . E 3 HOH B 68 330 172 HOH HOH . E 3 HOH B 69 331 173 HOH HOH . E 3 HOH B 70 332 174 HOH HOH . E 3 HOH B 71 333 175 HOH HOH . E 3 HOH B 72 334 176 HOH HOH . E 3 HOH B 73 335 177 HOH HOH . E 3 HOH B 74 336 178 HOH HOH . E 3 HOH B 75 337 179 HOH HOH . E 3 HOH B 76 338 180 HOH HOH . E 3 HOH B 77 339 181 HOH HOH . E 3 HOH B 78 340 186 HOH HOH . E 3 HOH B 79 341 203 HOH HOH . E 3 HOH B 80 342 204 HOH HOH . E 3 HOH B 81 343 205 HOH HOH . E 3 HOH B 82 344 206 HOH HOH . E 3 HOH B 83 345 207 HOH HOH . E 3 HOH B 84 346 208 HOH HOH . E 3 HOH B 85 347 209 HOH HOH . E 3 HOH B 86 348 210 HOH HOH . E 3 HOH B 87 349 211 HOH HOH . E 3 HOH B 88 350 212 HOH HOH . E 3 HOH B 89 351 213 HOH HOH . E 3 HOH B 90 352 214 HOH HOH . E 3 HOH B 91 353 215 HOH HOH . E 3 HOH B 92 354 216 HOH HOH . E 3 HOH B 93 355 217 HOH HOH . E 3 HOH B 94 356 218 HOH HOH . E 3 HOH B 95 357 219 HOH HOH . E 3 HOH B 96 358 220 HOH HOH . E 3 HOH B 97 359 221 HOH HOH . E 3 HOH B 98 360 247 HOH HOH . E 3 HOH B 99 361 248 HOH HOH . E 3 HOH B 100 362 249 HOH HOH . E 3 HOH B 101 363 250 HOH HOH . E 3 HOH B 102 364 251 HOH HOH . E 3 HOH B 103 365 252 HOH HOH . E 3 HOH B 104 366 253 HOH HOH . E 3 HOH B 105 367 254 HOH HOH . E 3 HOH B 106 368 255 HOH HOH . E 3 HOH B 107 369 256 HOH HOH . E 3 HOH B 108 370 257 HOH HOH . E 3 HOH B 109 371 258 HOH HOH . E 3 HOH B 110 372 259 HOH HOH . E 3 HOH B 111 373 260 HOH HOH . E 3 HOH B 112 374 261 HOH HOH . E 3 HOH B 113 375 262 HOH HOH . E 3 HOH B 114 376 263 HOH HOH . E 3 HOH B 115 377 264 HOH HOH . E 3 HOH B 116 378 265 HOH HOH . E 3 HOH B 117 379 266 HOH HOH . E 3 HOH B 118 380 267 HOH HOH . E 3 HOH B 119 381 268 HOH HOH . E 3 HOH B 120 382 269 HOH HOH . E 3 HOH B 121 383 270 HOH HOH . E 3 HOH B 122 384 271 HOH HOH . E 3 HOH B 123 385 272 HOH HOH . E 3 HOH B 124 386 273 HOH HOH . E 3 HOH B 125 387 274 HOH HOH . E 3 HOH B 126 388 275 HOH HOH . E 3 HOH B 127 389 276 HOH HOH . E 3 HOH B 128 390 277 HOH HOH . E 3 HOH B 129 391 278 HOH HOH . E 3 HOH B 130 392 284 HOH HOH . E 3 HOH B 131 393 285 HOH HOH . E 3 HOH B 132 394 293 HOH HOH . E 3 HOH B 133 395 300 HOH HOH . E 3 HOH B 134 396 301 HOH HOH . E 3 HOH B 135 397 302 HOH HOH . E 3 HOH B 136 398 303 HOH HOH . E 3 HOH B 137 399 306 HOH HOH . E 3 HOH B 138 400 307 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 4.412 _atom_site.Cartn_y 34.423 _atom_site.Cartn_z 33.39 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 64.67 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 263 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #