data_1B9S # _model_server_result.job_id PqPIv7SXJ2Tn-mpPwWLwAg _model_server_result.datetime_utc '2024-11-25 03:02:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b9s # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":467}' # _entry.id 1B9S # _exptl.entry_id 1B9S _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B9S _cell.length_a 124.251 _cell.length_b 124.251 _cell.length_c 71.375 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B9S _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.251 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 62.1255 -62.1255 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 62.1255 62.1255 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 87 1_555 A SG CYS 344 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 46 A CYS 122 1_555 A SG CYS 51 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 106 A CYS 182 1_555 A SG CYS 153 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf4 A SG CYS 155 A CYS 231 1_555 A SG CYS 160 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 201 A CYS 277 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf6 A SG CYS 203 A CYS 279 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf7 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 348 A CYS 424 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc1 A OE2 GLU 92 A GLU 168 3_545 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.967 ? metalc ? metalc2 A OE1 GLU 92 A GLU 168 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.115 ? metalc ? metalc3 A OE1 GLU 92 A GLU 168 3_545 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? metalc ? metalc4 A O ASP 217 A ASP 293 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc5 A O THR 221 A THR 297 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc6 A OD2 ASP 248 A ASP 324 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.113 ? metalc ? metalc7 A O GLY 270 A GLY 346 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc8 C CA CA . A CA 500 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc9 C CA CA . A CA 500 1_555 F O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 278 n n C1 O1 NAG sing 279 n n C1 O5 NAG sing 280 n n C1 H1 NAG sing 281 n n C2 C3 NAG sing 282 n n C2 N2 NAG sing 283 n n C2 H2 NAG sing 284 n n C3 C4 NAG sing 285 n n C3 O3 NAG sing 286 n n C3 H3 NAG sing 287 n n C4 C5 NAG sing 288 n n C4 O4 NAG sing 289 n n C4 H4 NAG sing 290 n n C5 C6 NAG sing 291 n n C5 O5 NAG sing 292 n n C5 H5 NAG sing 293 n n C6 O6 NAG sing 294 n n C6 H61 NAG sing 295 n n C6 H62 NAG sing 296 n n C7 C8 NAG sing 297 n n C7 N2 NAG sing 298 n n C7 O7 NAG doub 299 n n C8 H81 NAG sing 300 n n C8 H82 NAG sing 301 n n C8 H83 NAG sing 302 n n N2 HN2 NAG sing 303 n n O1 HO1 NAG sing 304 n n O3 HO3 NAG sing 305 n n O4 HO4 NAG sing 306 n n O6 HO6 NAG sing 307 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1B9S _atom_sites.fract_transf_matrix[1][1] 0.008048 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008048 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01401 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 467 467 NAG NAG . C 3 CA A 1 500 500 CA CA . D 3 CA A 1 501 501 CA CA . E 4 FDI A 1 468 1 FDI FDI . F 5 HOH A 1 502 502 HOH HOH . F 5 HOH A 2 503 503 HOH HOH . F 5 HOH A 3 579 579 HOH HOH . F 5 HOH A 4 586 586 HOH HOH . F 5 HOH A 5 588 588 HOH HOH . F 5 HOH A 6 593 593 HOH HOH . F 5 HOH A 7 594 594 HOH HOH . F 5 HOH A 8 595 595 HOH HOH . F 5 HOH A 9 601 601 HOH HOH . F 5 HOH A 10 602 602 HOH HOH . F 5 HOH A 11 603 603 HOH HOH . F 5 HOH A 12 604 604 HOH HOH . F 5 HOH A 13 605 605 HOH HOH . F 5 HOH A 14 609 609 HOH HOH . F 5 HOH A 15 610 610 HOH HOH . F 5 HOH A 16 611 611 HOH HOH . F 5 HOH A 17 613 613 HOH HOH . F 5 HOH A 18 618 618 HOH HOH . F 5 HOH A 19 620 620 HOH HOH . F 5 HOH A 20 621 621 HOH HOH . F 5 HOH A 21 622 622 HOH HOH . F 5 HOH A 22 623 623 HOH HOH . F 5 HOH A 23 629 629 HOH HOH . F 5 HOH A 24 637 637 HOH HOH . F 5 HOH A 25 638 638 HOH HOH . F 5 HOH A 26 640 640 HOH HOH . F 5 HOH A 27 641 641 HOH HOH . F 5 HOH A 28 642 642 HOH HOH . F 5 HOH A 29 643 643 HOH HOH . F 5 HOH A 30 646 646 HOH HOH . F 5 HOH A 31 649 649 HOH HOH . F 5 HOH A 32 650 650 HOH HOH . F 5 HOH A 33 651 651 HOH HOH . F 5 HOH A 34 652 652 HOH HOH . F 5 HOH A 35 667 667 HOH HOH . F 5 HOH A 36 668 668 HOH HOH . F 5 HOH A 37 672 672 HOH HOH . F 5 HOH A 38 673 673 HOH HOH . F 5 HOH A 39 677 677 HOH HOH . F 5 HOH A 40 682 682 HOH HOH . F 5 HOH A 41 683 683 HOH HOH . F 5 HOH A 42 684 684 HOH HOH . F 5 HOH A 43 697 697 HOH HOH . F 5 HOH A 44 700 700 HOH HOH . F 5 HOH A 45 706 706 HOH HOH . F 5 HOH A 46 707 707 HOH HOH . F 5 HOH A 47 708 708 HOH HOH . F 5 HOH A 48 709 709 HOH HOH . F 5 HOH A 49 710 710 HOH HOH . F 5 HOH A 50 711 711 HOH HOH . F 5 HOH A 51 713 713 HOH HOH . F 5 HOH A 52 715 715 HOH HOH . F 5 HOH A 53 716 716 HOH HOH . F 5 HOH A 54 724 724 HOH HOH . F 5 HOH A 55 725 725 HOH HOH . F 5 HOH A 56 726 726 HOH HOH . F 5 HOH A 57 727 727 HOH HOH . F 5 HOH A 58 729 729 HOH HOH . F 5 HOH A 59 730 730 HOH HOH . F 5 HOH A 60 735 735 HOH HOH . F 5 HOH A 61 736 736 HOH HOH . F 5 HOH A 62 737 737 HOH HOH . F 5 HOH A 63 741 741 HOH HOH . F 5 HOH A 64 742 742 HOH HOH . F 5 HOH A 65 752 752 HOH HOH . F 5 HOH A 66 755 755 HOH HOH . F 5 HOH A 67 756 756 HOH HOH . F 5 HOH A 68 757 757 HOH HOH . F 5 HOH A 69 758 758 HOH HOH . F 5 HOH A 70 766 766 HOH HOH . F 5 HOH A 71 767 767 HOH HOH . F 5 HOH A 72 770 770 HOH HOH . F 5 HOH A 73 774 774 HOH HOH . F 5 HOH A 74 779 779 HOH HOH . F 5 HOH A 75 780 780 HOH HOH . F 5 HOH A 76 781 781 HOH HOH . F 5 HOH A 77 782 782 HOH HOH . F 5 HOH A 78 786 786 HOH HOH . F 5 HOH A 79 793 793 HOH HOH . F 5 HOH A 80 798 798 HOH HOH . F 5 HOH A 81 800 800 HOH HOH . F 5 HOH A 82 816 816 HOH HOH . F 5 HOH A 83 817 817 HOH HOH . F 5 HOH A 84 825 825 HOH HOH . F 5 HOH A 85 828 828 HOH HOH . F 5 HOH A 86 830 830 HOH HOH . F 5 HOH A 87 850 850 HOH HOH . F 5 HOH A 88 852 852 HOH HOH . F 5 HOH A 89 854 854 HOH HOH . F 5 HOH A 90 855 855 HOH HOH . F 5 HOH A 91 858 858 HOH HOH . F 5 HOH A 92 865 865 HOH HOH . F 5 HOH A 93 866 866 HOH HOH . F 5 HOH A 94 867 867 HOH HOH . F 5 HOH A 95 884 884 HOH HOH . F 5 HOH A 96 887 887 HOH HOH . F 5 HOH A 97 890 890 HOH HOH . F 5 HOH A 98 891 891 HOH HOH . F 5 HOH A 99 892 892 HOH HOH . F 5 HOH A 100 896 896 HOH HOH . F 5 HOH A 101 903 903 HOH HOH . F 5 HOH A 102 905 905 HOH HOH . F 5 HOH A 103 910 910 HOH HOH . F 5 HOH A 104 914 914 HOH HOH . F 5 HOH A 105 917 917 HOH HOH . F 5 HOH A 106 921 921 HOH HOH . F 5 HOH A 107 930 930 HOH HOH . F 5 HOH A 108 931 931 HOH HOH . F 5 HOH A 109 934 934 HOH HOH . F 5 HOH A 110 936 936 HOH HOH . F 5 HOH A 111 937 937 HOH HOH . F 5 HOH A 112 938 938 HOH HOH . F 5 HOH A 113 939 939 HOH HOH . F 5 HOH A 114 943 943 HOH HOH . F 5 HOH A 115 955 955 HOH HOH . F 5 HOH A 116 956 956 HOH HOH . F 5 HOH A 117 957 957 HOH HOH . F 5 HOH A 118 961 961 HOH HOH . F 5 HOH A 119 963 963 HOH HOH . F 5 HOH A 120 966 966 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 42.326 -17.963 33.636 1 37.82 ? C1 NAG 467 A 1 HETATM 2 C C2 NAG . . . B 2 42.023 -19.4 33.162 1 32.13 ? C2 NAG 467 A 1 HETATM 3 C C3 NAG . . . B 2 43.234 -19.724 32.261 1 37.79 ? C3 NAG 467 A 1 HETATM 4 C C4 NAG . . . B 2 43.354 -18.714 31.035 1 38.13 ? C4 NAG 467 A 1 HETATM 5 C C5 NAG . . . B 2 42.955 -17.228 31.36 1 34.55 ? C5 NAG 467 A 1 HETATM 6 C C6 NAG . . . B 2 42.156 -16.722 30.166 1 38.11 ? C6 NAG 467 A 1 HETATM 7 C C7 NAG . . . B 2 41.097 -21.441 34.131 1 30.11 ? C7 NAG 467 A 1 HETATM 8 C C8 NAG . . . B 2 40.929 -22.28 35.384 1 29.72 ? C8 NAG 467 A 1 HETATM 9 N N2 NAG . . . B 2 41.783 -20.313 34.274 1 29.47 ? N2 NAG 467 A 1 HETATM 10 O O3 NAG . . . B 2 43.098 -21.05 31.751 1 46 ? O3 NAG 467 A 1 HETATM 11 O O4 NAG . . . B 2 44.713 -18.663 30.59 1 42.37 ? O4 NAG 467 A 1 HETATM 12 O O5 NAG . . . B 2 42.065 -17.114 32.494 1 39.19 ? O5 NAG 467 A 1 HETATM 13 O O6 NAG . . . B 2 41.566 -15.484 30.488 1 40.85 ? O6 NAG 467 A 1 HETATM 14 O O7 NAG . . . B 2 40.626 -21.803 33.055 1 36.46 ? O7 NAG 467 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #