data_1B9V # _model_server_result.job_id 2rtbryI8cs625DtrDuDLxw _model_server_result.datetime_utc '2024-11-23 12:50:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1b9v # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":467}' # _entry.id 1B9V # _exptl.entry_id 1B9V _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1B9V _cell.length_a 124.702 _cell.length_b 124.702 _cell.length_c 71.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1B9V _symmetry.cell_setting ? _symmetry.Int_Tables_number 90 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 4 21 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 124.702 0 0 3 'crystal symmetry operation' 3_545 -y+1/2,x-1/2,z 0 -1 0 1 0 0 0 0 1 62.351 -62.351 0 4 'crystal symmetry operation' 4_555 y+1/2,-x+1/2,z 0 1 0 -1 0 0 0 0 1 62.351 62.351 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 11 A CYS 87 1_555 A SG CYS 344 A CYS 420 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf2 A SG CYS 46 A CYS 122 1_555 A SG CYS 51 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf3 A SG CYS 106 A CYS 182 1_555 A SG CYS 153 A CYS 229 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf4 A SG CYS 155 A CYS 231 1_555 A SG CYS 160 A CYS 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 201 A CYS 277 1_555 A SG CYS 215 A CYS 291 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf6 A SG CYS 203 A CYS 279 1_555 A SG CYS 213 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf7 A SG CYS 242 A CYS 318 1_555 A SG CYS 261 A CYS 337 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf8 A SG CYS 348 A CYS 424 1_555 A SG CYS 371 A CYS 447 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OE1 GLU 92 A GLU 168 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc2 A OE2 GLU 92 A GLU 168 2_655 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.04 ? metalc ? metalc3 A O ASP 217 A ASP 293 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc4 A O THR 221 A THR 297 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 A OD2 ASP 248 A ASP 324 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? metalc ? metalc6 A O GLY 270 A GLY 346 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? metalc ? metalc7 C CA CA . A CA 500 1_555 F O HOH . A HOH 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.304 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1B9V _atom_sites.fract_transf_matrix[1][1] 0.008019 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008019 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013972 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 467 467 NAG NAG . C 3 CA A 1 500 500 CA CA . D 3 CA A 1 501 501 CA CA . E 4 RA2 A 1 468 1 RA2 RAI . F 5 HOH A 1 502 502 HOH HOH . F 5 HOH A 2 588 588 HOH HOH . F 5 HOH A 3 593 593 HOH HOH . F 5 HOH A 4 594 594 HOH HOH . F 5 HOH A 5 595 595 HOH HOH . F 5 HOH A 6 601 601 HOH HOH . F 5 HOH A 7 602 602 HOH HOH . F 5 HOH A 8 603 603 HOH HOH . F 5 HOH A 9 604 604 HOH HOH . F 5 HOH A 10 605 605 HOH HOH . F 5 HOH A 11 609 609 HOH HOH . F 5 HOH A 12 610 610 HOH HOH . F 5 HOH A 13 611 611 HOH HOH . F 5 HOH A 14 613 613 HOH HOH . F 5 HOH A 15 618 618 HOH HOH . F 5 HOH A 16 620 620 HOH HOH . F 5 HOH A 17 621 621 HOH HOH . F 5 HOH A 18 622 622 HOH HOH . F 5 HOH A 19 623 623 HOH HOH . F 5 HOH A 20 629 629 HOH HOH . F 5 HOH A 21 637 637 HOH HOH . F 5 HOH A 22 638 638 HOH HOH . F 5 HOH A 23 640 640 HOH HOH . F 5 HOH A 24 641 641 HOH HOH . F 5 HOH A 25 642 642 HOH HOH . F 5 HOH A 26 643 643 HOH HOH . F 5 HOH A 27 646 646 HOH HOH . F 5 HOH A 28 649 649 HOH HOH . F 5 HOH A 29 650 650 HOH HOH . F 5 HOH A 30 652 652 HOH HOH . F 5 HOH A 31 667 667 HOH HOH . F 5 HOH A 32 668 668 HOH HOH . F 5 HOH A 33 673 673 HOH HOH . F 5 HOH A 34 682 682 HOH HOH . F 5 HOH A 35 684 684 HOH HOH . F 5 HOH A 36 694 694 HOH HOH . F 5 HOH A 37 697 697 HOH HOH . F 5 HOH A 38 700 700 HOH HOH . F 5 HOH A 39 706 706 HOH HOH . F 5 HOH A 40 707 707 HOH HOH . F 5 HOH A 41 709 709 HOH HOH . F 5 HOH A 42 711 711 HOH HOH . F 5 HOH A 43 713 713 HOH HOH . F 5 HOH A 44 715 715 HOH HOH . F 5 HOH A 45 716 716 HOH HOH . F 5 HOH A 46 723 723 HOH HOH . F 5 HOH A 47 726 726 HOH HOH . F 5 HOH A 48 727 727 HOH HOH . F 5 HOH A 49 729 729 HOH HOH . F 5 HOH A 50 730 730 HOH HOH . F 5 HOH A 51 735 735 HOH HOH . F 5 HOH A 52 736 736 HOH HOH . F 5 HOH A 53 737 737 HOH HOH . F 5 HOH A 54 741 741 HOH HOH . F 5 HOH A 55 742 742 HOH HOH . F 5 HOH A 56 755 755 HOH HOH . F 5 HOH A 57 756 756 HOH HOH . F 5 HOH A 58 758 758 HOH HOH . F 5 HOH A 59 766 766 HOH HOH . F 5 HOH A 60 767 767 HOH HOH . F 5 HOH A 61 770 770 HOH HOH . F 5 HOH A 62 774 774 HOH HOH . F 5 HOH A 63 779 779 HOH HOH . F 5 HOH A 64 781 781 HOH HOH . F 5 HOH A 65 793 793 HOH HOH . F 5 HOH A 66 798 798 HOH HOH . F 5 HOH A 67 800 800 HOH HOH . F 5 HOH A 68 816 816 HOH HOH . F 5 HOH A 69 817 817 HOH HOH . F 5 HOH A 70 825 825 HOH HOH . F 5 HOH A 71 828 828 HOH HOH . F 5 HOH A 72 830 830 HOH HOH . F 5 HOH A 73 850 850 HOH HOH . F 5 HOH A 74 852 852 HOH HOH . F 5 HOH A 75 854 854 HOH HOH . F 5 HOH A 76 855 855 HOH HOH . F 5 HOH A 77 865 865 HOH HOH . F 5 HOH A 78 866 866 HOH HOH . F 5 HOH A 79 867 867 HOH HOH . F 5 HOH A 80 884 884 HOH HOH . F 5 HOH A 81 887 887 HOH HOH . F 5 HOH A 82 891 891 HOH HOH . F 5 HOH A 83 903 903 HOH HOH . F 5 HOH A 84 905 905 HOH HOH . F 5 HOH A 85 910 910 HOH HOH . F 5 HOH A 86 914 914 HOH HOH . F 5 HOH A 87 917 917 HOH HOH . F 5 HOH A 88 930 930 HOH HOH . F 5 HOH A 89 931 931 HOH HOH . F 5 HOH A 90 934 934 HOH HOH . F 5 HOH A 91 938 938 HOH HOH . F 5 HOH A 92 943 943 HOH HOH . F 5 HOH A 93 956 956 HOH HOH . F 5 HOH A 94 957 957 HOH HOH . F 5 HOH A 95 961 961 HOH HOH . F 5 HOH A 96 963 963 HOH HOH . F 5 HOH A 97 966 966 HOH HOH . F 5 HOH A 98 967 967 HOH HOH . F 5 HOH A 99 968 968 HOH HOH . F 5 HOH A 100 969 969 HOH HOH . F 5 HOH A 101 970 970 HOH HOH . F 5 HOH A 102 971 971 HOH HOH . F 5 HOH A 103 972 972 HOH HOH . F 5 HOH A 104 973 973 HOH HOH . F 5 HOH A 105 974 974 HOH HOH . F 5 HOH A 106 975 975 HOH HOH . F 5 HOH A 107 976 976 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 41.218 -17.972 33.123 1 36.77 ? C1 NAG 467 A 1 HETATM 2 C C2 NAG . . . B 2 41.393 -19.468 32.924 1 39.79 ? C2 NAG 467 A 1 HETATM 3 C C3 NAG . . . B 2 42.87 -19.586 32.403 1 40.43 ? C3 NAG 467 A 1 HETATM 4 C C4 NAG . . . B 2 43.086 -18.724 31.048 1 42.56 ? C4 NAG 467 A 1 HETATM 5 C C5 NAG . . . B 2 42.523 -17.288 31.218 1 42.46 ? C5 NAG 467 A 1 HETATM 6 C C6 NAG . . . B 2 42.387 -16.424 29.983 1 44.17 ? C6 NAG 467 A 1 HETATM 7 C C7 NAG . . . B 2 40.872 -21.382 34.409 1 35.19 ? C7 NAG 467 A 1 HETATM 8 C C8 NAG . . . B 2 40.558 -21.811 35.822 1 32.37 ? C8 NAG 467 A 1 HETATM 9 N N2 NAG . . . B 2 41.081 -20.085 34.213 1 36.71 ? N2 NAG 467 A 1 HETATM 10 O O3 NAG . . . B 2 43.152 -20.955 32.171 1 46.49 ? O3 NAG 467 A 1 HETATM 11 O O4 NAG . . . B 2 44.448 -18.604 30.654 1 41.31 ? O4 NAG 467 A 1 HETATM 12 O O5 NAG . . . B 2 41.207 -17.357 31.826 1 43.06 ? O5 NAG 467 A 1 HETATM 13 O O6 NAG . . . B 2 41.635 -15.277 30.343 1 44.78 ? O6 NAG 467 A 1 HETATM 14 O O7 NAG . . . B 2 40.93 -22.215 33.508 1 40.98 ? O7 NAG 467 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #