data_1B9Y
#
_model_server_result.job_id            d42H-we7hUhHoj96p-5eeA 
_model_server_result.datetime_utc      '2024-10-18 16:32:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1b9y 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":101}' 
#
_entry.id    1B9Y 
#
_exptl.entry_id    1B9Y 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              157.25 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'GADOLINIUM ATOM' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1B9Y 
_cell.length_a            76.47 
_cell.length_b            89.92 
_cell.length_c            102.34 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1B9Y 
_symmetry.cell_setting             orthorhombic 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O GLN 44 A GLN 44 1_555 D GD GD . A GD 341 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.573 ? 
metalc ? metalc2 A O CYS 204 A CYS 204 1_555 E GD GD . A GD 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.002 ? 
metalc ? metalc3 A OD1 ASP 228 A ASP 228 1_555 E GD GD . A GD 342 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 D GD GD . A GD 341 1_555 J O HOH . A HOH 345 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.937 ? 
metalc ? metalc5 D GD GD . A GD 341 1_555 L O HOH . C HOH 255 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? 
metalc ? metalc6 K O HOH . B HOH 1 1_555 F GD GD . B GD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? 
metalc ? metalc7 K O HOH . B HOH 10 1_555 G GD GD . B GD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.526 ? 
metalc ? metalc8 K O HOH . B HOH 18 1_555 F GD GD . B GD 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.05 ? 
metalc ? metalc9 K O HOH . B HOH 19 1_555 G GD GD . B GD 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? 
metalc ? metalc10 F GD GD . B GD 101 1_555 B OD2 ASP 42 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.494 ? 
metalc ? metalc11 F GD GD . B GD 101 1_555 B OE2 GLU 46 B GLU 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.794 ? 
metalc ? metalc12 F GD GD . B GD 101 1_555 B OE1 GLU 46 B GLU 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc13 G GD GD . B GD 104 1_555 B OD1 ASP 42 B ASP 542 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.848 ? 
metalc ? metalc14 G GD GD . B GD 104 1_555 B OE2 GLU 46 B GLU 546 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? 
metalc ? metalc15 G GD GD . B GD 104 1_555 C OE1 GLU 206 C GLU 206 4_476 ? ? ? ? ? ? ? ? ? ? ? ? 3.1 ? 
metalc ? metalc16 C OE2 GLU 161 C GLU 161 1_555 H GD GD . C GD 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? 
metalc ? metalc17 C OE1 GLU 161 C GLU 161 1_555 H GD GD . C GD 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.888 ? 
metalc ? metalc18 C OE1 GLU 218 C GLU 218 1_555 H GD GD . C GD 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.514 ? 
metalc ? metalc19 C OE2 GLU 218 C GLU 218 1_555 H GD GD . C GD 247 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? 
metalc ? metalc20 C OE2 GLU 223 C GLU 223 1_555 I GD GD . C GD 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.847 ? 
metalc ? metalc21 C OE1 GLU 223 C GLU 223 1_555 I GD GD . C GD 248 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.084 ? 
metalc ? metalc22 H GD GD . C GD 247 1_555 L O HOH . C HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? 
metalc ? metalc23 H GD GD . C GD 247 1_555 L O HOH . C HOH 250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.678 ? 
metalc ? metalc24 H GD GD . C GD 247 1_555 L O HOH . C HOH 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? 
#
_chem_comp.formula           Gd 
_chem_comp.formula_weight    157.25 
_chem_comp.id                GD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'GADOLINIUM ATOM' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1B9Y 
_atom_sites.fract_transf_matrix[1][1]    0.013077 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011121 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009771 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 4 GD A 1 341 3 GD GD . 
E 4 GD A 1 342 6 GD GD . 
F 4 GD B 1 101 1 GD GD . 
G 4 GD B 1 104 4 GD GD . 
H 4 GD C 1 247 2 GD GD . 
I 4 GD C 1 248 5 GD GD . 
J 5 HOH A 1 343 3 HOH HOH . 
J 5 HOH A 2 344 4 HOH HOH . 
J 5 HOH A 3 345 9 HOH HOH . 
J 5 HOH A 4 346 13 HOH HOH . 
J 5 HOH A 5 347 16 HOH HOH . 
J 5 HOH A 6 348 17 HOH HOH . 
K 5 HOH B 1 1 1 HOH HOH . 
K 5 HOH B 2 6 6 HOH HOH . 
K 5 HOH B 3 10 10 HOH HOH . 
K 5 HOH B 4 15 15 HOH HOH . 
K 5 HOH B 5 18 18 HOH HOH . 
K 5 HOH B 6 19 19 HOH HOH . 
L 5 HOH C 1 249 2 HOH HOH . 
L 5 HOH C 2 250 5 HOH HOH . 
L 5 HOH C 3 251 7 HOH HOH . 
L 5 HOH C 4 252 8 HOH HOH . 
L 5 HOH C 5 253 11 HOH HOH . 
L 5 HOH C 6 254 12 HOH HOH . 
L 5 HOH C 7 255 14 HOH HOH . 
L 5 HOH C 8 256 20 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           GD 
_atom_site.label_atom_id         GD 
_atom_site.label_comp_id         GD 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         F 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               161.285 
_atom_site.Cartn_y               117.794 
_atom_site.Cartn_z               49.482 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        63.47 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          GD 
_atom_site.auth_comp_id          GD 
_atom_site.auth_seq_id           101 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#