data_1BA8 # _model_server_result.job_id 7fUdtcviGQD55UBpCR5_uw _model_server_result.datetime_utc '2024-12-27 00:44:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ba8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":400}' # _entry.id 1BA8 # _exptl.entry_id 1BA8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 5 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.9 _cell.angle_gamma 90 _cell.entry_id 1BA8 _cell.length_a 71.26 _cell.length_b 72.29 _cell.length_c 72.99 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BA8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? covale ? covale1 B ND2 ASN 53 B ASN 60 1_555 E C1 NAG . B NAG 400 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.445 ? covale ? covale2 C C GLU 11 C GLU 62 1_555 C N TYS 12 C TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 307 n n C1 O1 NAG sing 308 n n C1 O5 NAG sing 309 n n C1 H1 NAG sing 310 n n C2 C3 NAG sing 311 n n C2 N2 NAG sing 312 n n C2 H2 NAG sing 313 n n C3 C4 NAG sing 314 n n C3 O3 NAG sing 315 n n C3 H3 NAG sing 316 n n C4 C5 NAG sing 317 n n C4 O4 NAG sing 318 n n C4 H4 NAG sing 319 n n C5 C6 NAG sing 320 n n C5 O5 NAG sing 321 n n C5 H5 NAG sing 322 n n C6 O6 NAG sing 323 n n C6 H61 NAG sing 324 n n C6 H62 NAG sing 325 n n C7 C8 NAG sing 326 n n C7 N2 NAG sing 327 n n C7 O7 NAG doub 328 n n C8 H81 NAG sing 329 n n C8 H82 NAG sing 330 n n C8 H83 NAG sing 331 n n N2 HN2 NAG sing 332 n n O1 HO1 NAG sing 333 n n O3 HO3 NAG sing 334 n n O4 HO4 NAG sing 335 n n O6 HO6 NAG sing 336 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 1BA8 _atom_sites.fract_transf_matrix[1][1] 0.014033 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002702 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013833 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0IT B 1 1 1 0IT PMS . E 5 NAG B 1 400 400 NAG NAG . F 6 HOH A 1 432 432 HOH HOH . F 6 HOH A 2 452 452 HOH HOH . F 6 HOH A 3 462 462 HOH HOH . F 6 HOH A 4 463 463 HOH HOH . F 6 HOH A 5 465 465 HOH HOH . F 6 HOH A 6 468 468 HOH HOH . F 6 HOH A 7 474 474 HOH HOH . F 6 HOH A 8 482 482 HOH HOH . F 6 HOH A 9 486 486 HOH HOH . F 6 HOH A 10 493 493 HOH HOH . F 6 HOH A 11 494 494 HOH HOH . F 6 HOH A 12 496 496 HOH HOH . F 6 HOH A 13 501 501 HOH HOH . F 6 HOH A 14 508 508 HOH HOH . F 6 HOH A 15 515 515 HOH HOH . F 6 HOH A 16 516 516 HOH HOH . G 6 HOH B 1 401 401 HOH HOH . G 6 HOH B 2 402 402 HOH HOH . G 6 HOH B 3 403 403 HOH HOH . G 6 HOH B 4 404 404 HOH HOH . G 6 HOH B 5 405 405 HOH HOH . G 6 HOH B 6 406 406 HOH HOH . G 6 HOH B 7 407 407 HOH HOH . G 6 HOH B 8 408 408 HOH HOH . G 6 HOH B 9 409 409 HOH HOH . G 6 HOH B 10 410 410 HOH HOH . G 6 HOH B 11 411 411 HOH HOH . G 6 HOH B 12 412 412 HOH HOH . G 6 HOH B 13 413 413 HOH HOH . G 6 HOH B 14 414 414 HOH HOH . G 6 HOH B 15 415 415 HOH HOH . G 6 HOH B 16 416 416 HOH HOH . G 6 HOH B 17 417 417 HOH HOH . G 6 HOH B 18 418 418 HOH HOH . G 6 HOH B 19 419 419 HOH HOH . G 6 HOH B 20 420 420 HOH HOH . G 6 HOH B 21 421 421 HOH HOH . G 6 HOH B 22 422 422 HOH HOH . G 6 HOH B 23 423 423 HOH HOH . G 6 HOH B 24 424 424 HOH HOH . G 6 HOH B 25 425 425 HOH HOH . G 6 HOH B 26 426 426 HOH HOH . G 6 HOH B 27 427 427 HOH HOH . G 6 HOH B 28 428 428 HOH HOH . G 6 HOH B 29 429 429 HOH HOH . G 6 HOH B 30 430 430 HOH HOH . G 6 HOH B 31 431 431 HOH HOH . G 6 HOH B 32 433 433 HOH HOH . G 6 HOH B 33 434 434 HOH HOH . G 6 HOH B 34 435 435 HOH HOH . G 6 HOH B 35 436 436 HOH HOH . G 6 HOH B 36 437 437 HOH HOH . G 6 HOH B 37 438 438 HOH HOH . G 6 HOH B 38 439 439 HOH HOH . G 6 HOH B 39 440 440 HOH HOH . G 6 HOH B 40 441 441 HOH HOH . G 6 HOH B 41 442 442 HOH HOH . G 6 HOH B 42 443 443 HOH HOH . G 6 HOH B 43 444 444 HOH HOH . G 6 HOH B 44 445 445 HOH HOH . G 6 HOH B 45 446 446 HOH HOH . G 6 HOH B 46 447 447 HOH HOH . G 6 HOH B 47 448 448 HOH HOH . G 6 HOH B 48 449 449 HOH HOH . G 6 HOH B 49 450 450 HOH HOH . G 6 HOH B 50 451 451 HOH HOH . G 6 HOH B 51 453 453 HOH HOH . G 6 HOH B 52 454 454 HOH HOH . G 6 HOH B 53 455 455 HOH HOH . G 6 HOH B 54 456 456 HOH HOH . G 6 HOH B 55 457 457 HOH HOH . G 6 HOH B 56 458 458 HOH HOH . G 6 HOH B 57 459 459 HOH HOH . G 6 HOH B 58 460 460 HOH HOH . G 6 HOH B 59 461 461 HOH HOH . G 6 HOH B 60 464 464 HOH HOH . G 6 HOH B 61 466 466 HOH HOH . G 6 HOH B 62 467 467 HOH HOH . G 6 HOH B 63 469 469 HOH HOH . G 6 HOH B 64 470 470 HOH HOH . G 6 HOH B 65 471 471 HOH HOH . G 6 HOH B 66 472 472 HOH HOH . G 6 HOH B 67 473 473 HOH HOH . G 6 HOH B 68 475 475 HOH HOH . G 6 HOH B 69 476 476 HOH HOH . G 6 HOH B 70 477 477 HOH HOH . G 6 HOH B 71 478 478 HOH HOH . G 6 HOH B 72 479 479 HOH HOH . G 6 HOH B 73 480 480 HOH HOH . G 6 HOH B 74 481 481 HOH HOH . G 6 HOH B 75 483 483 HOH HOH . G 6 HOH B 76 484 484 HOH HOH . G 6 HOH B 77 485 485 HOH HOH . G 6 HOH B 78 487 487 HOH HOH . G 6 HOH B 79 488 488 HOH HOH . G 6 HOH B 80 489 489 HOH HOH . G 6 HOH B 81 490 490 HOH HOH . G 6 HOH B 82 491 491 HOH HOH . G 6 HOH B 83 492 492 HOH HOH . G 6 HOH B 84 495 495 HOH HOH . G 6 HOH B 85 497 497 HOH HOH . G 6 HOH B 86 498 498 HOH HOH . G 6 HOH B 87 499 499 HOH HOH . G 6 HOH B 88 500 500 HOH HOH . G 6 HOH B 89 502 502 HOH HOH . G 6 HOH B 90 503 503 HOH HOH . G 6 HOH B 91 504 504 HOH HOH . G 6 HOH B 92 505 505 HOH HOH . G 6 HOH B 93 506 506 HOH HOH . G 6 HOH B 94 507 507 HOH HOH . G 6 HOH B 95 509 509 HOH HOH . G 6 HOH B 96 510 510 HOH HOH . G 6 HOH B 97 511 511 HOH HOH . G 6 HOH B 98 512 512 HOH HOH . G 6 HOH B 99 513 513 HOH HOH . G 6 HOH B 100 514 514 HOH HOH . G 6 HOH B 101 517 517 HOH HOH . G 6 HOH B 102 518 518 HOH HOH . G 6 HOH B 103 519 519 HOH HOH . G 6 HOH B 104 520 520 HOH HOH . G 6 HOH B 105 521 521 HOH HOH . G 6 HOH B 106 522 522 HOH HOH . G 6 HOH B 107 523 523 HOH HOH . G 6 HOH B 108 524 524 HOH HOH . G 6 HOH B 109 525 525 HOH HOH . G 6 HOH B 110 526 526 HOH HOH . G 6 HOH B 111 527 527 HOH HOH . G 6 HOH B 112 528 528 HOH HOH . G 6 HOH B 113 529 529 HOH HOH . G 6 HOH B 114 530 530 HOH HOH . G 6 HOH B 115 531 531 HOH HOH . G 6 HOH B 116 532 532 HOH HOH . G 6 HOH B 117 533 533 HOH HOH . G 6 HOH B 118 534 534 HOH HOH . G 6 HOH B 119 535 535 HOH HOH . G 6 HOH B 120 536 536 HOH HOH . G 6 HOH B 121 537 537 HOH HOH . G 6 HOH B 122 538 538 HOH HOH . G 6 HOH B 123 539 539 HOH HOH . G 6 HOH B 124 540 540 HOH HOH . G 6 HOH B 125 541 541 HOH HOH . G 6 HOH B 126 542 542 HOH HOH . G 6 HOH B 127 543 543 HOH HOH . G 6 HOH B 128 545 545 HOH HOH . G 6 HOH B 129 546 546 HOH HOH . G 6 HOH B 130 547 547 HOH HOH . G 6 HOH B 131 548 548 HOH HOH . G 6 HOH B 132 549 549 HOH HOH . G 6 HOH B 133 551 551 HOH HOH . G 6 HOH B 134 552 552 HOH HOH . G 6 HOH B 135 553 553 HOH HOH . G 6 HOH B 136 554 554 HOH HOH . G 6 HOH B 137 555 555 HOH HOH . G 6 HOH B 138 556 556 HOH HOH . G 6 HOH B 139 557 557 HOH HOH . G 6 HOH B 140 558 558 HOH HOH . H 6 HOH C 1 544 544 HOH HOH . H 6 HOH C 2 550 550 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . E 5 32.165 -8.731 11.028 1 50 ? C1 NAG 400 B 1 HETATM 2 C C2 NAG . . . E 5 33.363 -9.679 10.808 1 50 ? C2 NAG 400 B 1 HETATM 3 C C3 NAG . . . E 5 34.612 -8.887 11.203 1 50 ? C3 NAG 400 B 1 HETATM 4 C C4 NAG . . . E 5 34.636 -7.565 10.464 1 50 ? C4 NAG 400 B 1 HETATM 5 C C5 NAG . . . E 5 33.427 -7.262 9.58 1 50 ? C5 NAG 400 B 1 HETATM 6 C C6 NAG . . . E 5 33.722 -7.217 8.087 1 50 ? C6 NAG 400 B 1 HETATM 7 C C7 NAG . . . E 5 33.096 -10.553 13.032 1 50 ? C7 NAG 400 B 1 HETATM 8 C C8 NAG . . . E 5 33.191 -11.75 13.936 1 50 ? C8 NAG 400 B 1 HETATM 9 N N2 NAG . . . E 5 33.242 -10.846 11.694 1 50 ? N2 NAG 400 B 1 HETATM 10 O O3 NAG . . . E 5 35.774 -9.737 11.094 1 50 ? O3 NAG 400 B 1 HETATM 11 O O4 NAG . . . E 5 34.76 -6.521 11.481 1 50 ? O4 NAG 400 B 1 HETATM 12 O O5 NAG . . . E 5 32.351 -8.197 9.725 1 50 ? O5 NAG 400 B 1 HETATM 13 O O6 NAG . . . E 5 32.573 -7.564 7.337 1 50 ? O6 NAG 400 B 1 HETATM 14 O O7 NAG . . . E 5 32.807 -9.42 13.432 1 50 ? O7 NAG 400 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 57 _model_server_stats.query_time_ms 534 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 14 #