data_1BAF
#
_model_server_result.job_id            eym8PfMa1qoJ9va28C6qkQ 
_model_server_result.datetime_utc      '2024-12-17 06:56:15' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1baf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":250}' 
#
_entry.id    1BAF 
#
_exptl.entry_id    1BAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              395.433 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-(2-AMINO-ETHYL)-4,6-DINITRO-N'-(2,2,6,6-TETRAMETHYL-1-OXY-PIPERIDIN-4-YL)-BENZENE-1,3-DIAMINE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BAF 
_cell.length_a            73.23 
_cell.length_b            73.23 
_cell.length_c            373.8 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? 
disulf ? disulf2 A SG CYS 134 L CYS 134 1_555 A SG CYS 194 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? 
disulf ? disulf3 A SG CYS 214 L CYS 214 1_555 B SG CYS 217 H CYS 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf5 B SG CYS 142 H CYS 142 1_555 B SG CYS 197 H CYS 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C17 H27 N6 O5 -1' 
_chem_comp.formula_weight    395.433 
_chem_comp.id                NPP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-(2-AMINO-ETHYL)-4,6-DINITRO-N'-(2,2,6,6-TETRAMETHYL-1-OXY-PIPERIDIN-4-YL)-BENZENE-1,3-DIAMINE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 NPP sing 235 n n 
N1 C2 NPP sing 236 n n 
N1 C6 NPP sing 237 n n 
C2 CM1 NPP sing 238 n n 
C2 CM2 NPP sing 239 n n 
C2 C3 NPP sing 240 n n 
CM1 HM11 NPP sing 241 n n 
CM1 HM12 NPP sing 242 n n 
CM1 HM13 NPP sing 243 n n 
CM2 HM21 NPP sing 244 n n 
CM2 HM22 NPP sing 245 n n 
CM2 HM23 NPP sing 246 n n 
C3 C4 NPP sing 247 n n 
C3 H31 NPP sing 248 n n 
C3 H32 NPP sing 249 n n 
C4 C5 NPP sing 250 n n 
C4 N2 NPP sing 251 n n 
C4 H4 NPP sing 252 n n 
C5 C6 NPP sing 253 n n 
C5 H51 NPP sing 254 n n 
C5 H52 NPP sing 255 n n 
C6 CM3 NPP sing 256 n n 
C6 CM4 NPP sing 257 n n 
CM3 HM31 NPP sing 258 n n 
CM3 HM32 NPP sing 259 n n 
CM3 HM33 NPP sing 260 n n 
CM4 HM41 NPP sing 261 n n 
CM4 HM42 NPP sing 262 n n 
CM4 HM43 NPP sing 263 n n 
N2 C7 NPP sing 264 n n 
N2 HN2 NPP sing 265 n n 
C7 C8 NPP doub 266 n y 
C7 C12 NPP sing 267 n y 
C8 N3 NPP sing 268 n n 
C8 C9 NPP sing 269 n y 
N3 O2 NPP sing 270 n n 
N3 O3 NPP doub 271 n n 
C9 C10 NPP doub 272 n y 
C9 H9 NPP sing 273 n n 
C10 N4 NPP sing 274 n n 
C10 C11 NPP sing 275 n y 
N4 O4 NPP sing 276 n n 
N4 O5 NPP doub 277 n n 
C11 C12 NPP doub 278 n y 
C11 N5 NPP sing 279 n n 
C12 H12 NPP sing 280 n n 
N5 C13 NPP sing 281 n n 
N5 HN5 NPP sing 282 n n 
C13 C14 NPP sing 283 n n 
C13 H131 NPP sing 284 n n 
C13 H132 NPP sing 285 n n 
C14 N6 NPP sing 286 n n 
C14 H141 NPP sing 287 n n 
C14 H142 NPP sing 288 n n 
N6 HN61 NPP sing 289 n n 
N6 HN62 NPP sing 290 n n 
#
_atom_sites.entry_id                     1BAF 
_atom_sites.fract_transf_matrix[1][1]    0.013656 
_atom_sites.fract_transf_matrix[1][2]    0.007884 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015768 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002675 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           NPP 
_pdbx_nonpoly_scheme.pdb_strand_id    L 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      250 
_pdbx_nonpoly_scheme.auth_seq_num     250 
_pdbx_nonpoly_scheme.pdb_mon_id       NPP 
_pdbx_nonpoly_scheme.auth_mon_id      NPP 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 NPP . . . C 3 -5.342 62.74 178.172 1 40.54 ? N1 NPP 250 L 1 
HETATM 2 O O1 NPP . . . C 3 -4.983 63.899 177.892 1 41.21 ? O1 NPP 250 L 1 
HETATM 3 C C2 NPP . . . C 3 -4.881 61.594 177.267 1 39.48 ? C2 NPP 250 L 1 
HETATM 4 C CM1 NPP . . . C 3 -5.488 61.726 175.869 1 35.49 ? CM1 NPP 250 L 1 
HETATM 5 C CM2 NPP . . . C 3 -3.358 61.631 177.122 1 40.37 ? CM2 NPP 250 L 1 
HETATM 6 C C3 NPP . . . C 3 -5.225 60.245 177.862 1 36.25 ? C3 NPP 250 L 1 
HETATM 7 C C4 NPP . . . C 3 -5.203 60.298 179.361 1 35.08 ? C4 NPP 250 L 1 
HETATM 8 C C5 NPP . . . C 3 -6.401 61.087 179.764 1 36.52 ? C5 NPP 250 L 1 
HETATM 9 C C6 NPP . . . C 3 -6.227 62.539 179.401 1 38.41 ? C6 NPP 250 L 1 
HETATM 10 C CM3 NPP . . . C 3 -5.575 63.144 180.639 1 37.87 ? CM3 NPP 250 L 1 
HETATM 11 C CM4 NPP . . . C 3 -7.577 63.201 179.147 1 38.58 ? CM4 NPP 250 L 1 
HETATM 12 N N2 NPP . . . C 3 -5.252 58.927 179.943 1 29.09 ? N2 NPP 250 L 1 
HETATM 13 C C7 NPP . . . C 3 -4.477 58.577 181.164 1 22.9 ? C7 NPP 250 L 1 
HETATM 14 C C8 NPP . . . C 3 -4.528 57.295 181.661 1 25.86 ? C8 NPP 250 L 1 
HETATM 15 N N3 NPP . . . C 3 -5.244 56.165 181.014 1 28 ? N3 NPP 250 L 1 
HETATM 16 O O2 NPP . . . C 3 -5.302 55.071 181.576 1 29.33 ? O2 NPP 250 L 1 
HETATM 17 O O3 NPP . . . C 3 -5.813 56.325 179.954 1 34.19 ? O3 NPP 250 L 1 
HETATM 18 C C9 NPP . . . C 3 -3.852 56.978 182.772 1 23.87 ? C9 NPP 250 L 1 
HETATM 19 C C10 NPP . . . C 3 -3.113 57.895 183.412 1 23.42 ? C10 NPP 250 L 1 
HETATM 20 N N4 NPP . . . C 3 -2.361 57.345 184.567 1 26.1 ? N4 NPP 250 L 1 
HETATM 21 O O4 NPP . . . C 3 -2.511 56.153 184.869 1 21.63 ? O4 NPP 250 L 1 
HETATM 22 O O5 NPP . . . C 3 -1.598 58.054 185.212 1 35.6 ? O5 NPP 250 L 1 
HETATM 23 C C11 NPP . . . C 3 -3.046 59.194 182.944 1 20.48 ? C11 NPP 250 L 1 
HETATM 24 C C12 NPP . . . C 3 -3.734 59.53 181.811 1 21.09 ? C12 NPP 250 L 1 
HETATM 25 N N5 NPP . . . C 3 -2.281 60.249 183.668 1 26.14 ? N5 NPP 250 L 1 
HETATM 26 C C13 NPP . . . C 3 -2.4 61.709 183.312 1 35.38 ? C13 NPP 250 L 1 
HETATM 27 C C14 NPP . . . C 3 -1.461 62.556 184.207 1 41.53 ? C14 NPP 250 L 1 
HETATM 28 N N6 NPP . . . C 3 -2.169 63.413 185.159 1 45.99 ? N6 NPP 250 L 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           28 
#