data_1BAG # _model_server_result.job_id keSPYI7rJCO8qCn-EgXeoQ _model_server_result.datetime_utc '2024-12-26 23:37:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":433}' # _entry.id 1BAG # _exptl.entry_id 1BAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BAG _cell.length_a 72.59 _cell.length_b 74.06 _cell.length_c 117.01 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 GLC BGC C1 O1 . O4 HO4 . sing 2 ? 2 3 2 GLC GLC C1 O1 . O4 HO4 . sing 3 ? 2 4 3 GLC GLC C1 O1 . O4 HO4 . sing 4 ? 2 5 4 GLC GLC C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC ? 5 BGC 2 n B GLC 2 B 2 GLC ? 4 GLC 2 n B GLC 3 B 3 GLC ? 3 GLC 2 n B GLC 4 B 4 GLC ? 2 GLC 2 n B GLC 5 B 5 GLC ? 1 GLC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 GLC . B GLC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale2 B O4 GLC . B GLC 2 1_555 B C1 GLC . B GLC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 ? covale ? covale3 B O4 GLC . B GLC 3 1_555 B C1 GLC . B GLC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale4 B O4 GLC . B GLC 4 1_555 B C1 GLC . B GLC 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.4 ? metalc ? metalc1 A OE2 GLU 89 A GLU 89 3_555 E CA CA . A CA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc2 A OD1 ASN 101 A ASN 101 1_555 C CA CA . A CA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc3 A O THR 137 A THR 137 1_555 C CA CA . A CA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc4 A OD1 ASP 146 A ASP 146 1_555 C CA CA . A CA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.519 ? metalc ? metalc5 A OD2 ASP 146 A ASP 146 1_555 C CA CA . A CA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc6 A O GLY 169 A GLY 169 1_555 D CA CA . A CA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 A OD2 ASP 171 A ASP 171 1_555 D CA CA . A CA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc8 A OD1 ASP 171 A ASP 171 1_555 D CA CA . A CA 432 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc9 A O HIS 180 A HIS 180 1_555 C CA CA . A CA 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.341 ? metalc ? metalc10 A OE2 GLU 276 A GLU 276 1_555 E CA CA . A CA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.564 ? metalc ? metalc11 A OE1 GLU 276 A GLU 276 1_555 E CA CA . A CA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.603 ? metalc ? metalc12 A O GLY 313 A GLY 313 1_555 E CA CA . A CA 433 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc13 C CA CA . A CA 431 1_555 F O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc14 D CA CA . A CA 432 1_555 F O HOH . A HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.452 ? metalc ? metalc15 D CA CA . A CA 432 1_555 F O HOH . A HOH 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? metalc ? metalc16 D CA CA . A CA 432 1_555 F O HOH . A HOH 538 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.418 ? metalc ? metalc17 E CA CA . A CA 433 1_555 F O HOH . A HOH 494 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.613 ? metalc ? metalc18 E CA CA . A CA 433 1_555 F O HOH . A HOH 524 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.445 ? metalc ? metalc19 E CA CA . A CA 433 1_555 F O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BAG _atom_sites.fract_transf_matrix[1][1] 0.013776 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008546 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 431 6 CA CA . D 3 CA A 1 432 7 CA CA . E 3 CA A 1 433 8 CA CA . F 4 HOH A 1 434 1 HOH HOH . F 4 HOH A 2 435 2 HOH HOH . F 4 HOH A 3 436 3 HOH HOH . F 4 HOH A 4 437 4 HOH HOH . F 4 HOH A 5 438 5 HOH HOH . F 4 HOH A 6 439 6 HOH HOH . F 4 HOH A 7 440 7 HOH HOH . F 4 HOH A 8 441 8 HOH HOH . F 4 HOH A 9 442 9 HOH HOH . F 4 HOH A 10 443 10 HOH HOH . F 4 HOH A 11 444 11 HOH HOH . F 4 HOH A 12 445 12 HOH HOH . F 4 HOH A 13 446 13 HOH HOH . F 4 HOH A 14 447 14 HOH HOH . F 4 HOH A 15 448 15 HOH HOH . F 4 HOH A 16 449 16 HOH HOH . F 4 HOH A 17 450 17 HOH HOH . F 4 HOH A 18 451 18 HOH HOH . F 4 HOH A 19 452 19 HOH HOH . F 4 HOH A 20 453 20 HOH HOH . F 4 HOH A 21 454 21 HOH HOH . F 4 HOH A 22 455 22 HOH HOH . F 4 HOH A 23 456 23 HOH HOH . F 4 HOH A 24 457 24 HOH HOH . F 4 HOH A 25 458 25 HOH HOH . F 4 HOH A 26 459 26 HOH HOH . F 4 HOH A 27 460 27 HOH HOH . F 4 HOH A 28 461 28 HOH HOH . F 4 HOH A 29 462 29 HOH HOH . F 4 HOH A 30 463 30 HOH HOH . F 4 HOH A 31 464 31 HOH HOH . F 4 HOH A 32 465 32 HOH HOH . F 4 HOH A 33 466 33 HOH HOH . F 4 HOH A 34 467 34 HOH HOH . F 4 HOH A 35 468 35 HOH HOH . F 4 HOH A 36 469 36 HOH HOH . F 4 HOH A 37 470 37 HOH HOH . F 4 HOH A 38 471 38 HOH HOH . F 4 HOH A 39 472 39 HOH HOH . F 4 HOH A 40 473 40 HOH HOH . F 4 HOH A 41 474 41 HOH HOH . F 4 HOH A 42 475 42 HOH HOH . F 4 HOH A 43 476 43 HOH HOH . F 4 HOH A 44 477 44 HOH HOH . F 4 HOH A 45 478 45 HOH HOH . F 4 HOH A 46 479 46 HOH HOH . F 4 HOH A 47 480 47 HOH HOH . F 4 HOH A 48 481 48 HOH HOH . F 4 HOH A 49 482 49 HOH HOH . F 4 HOH A 50 483 50 HOH HOH . F 4 HOH A 51 484 51 HOH HOH . F 4 HOH A 52 485 52 HOH HOH . F 4 HOH A 53 486 53 HOH HOH . F 4 HOH A 54 487 54 HOH HOH . F 4 HOH A 55 488 55 HOH HOH . F 4 HOH A 56 489 56 HOH HOH . F 4 HOH A 57 490 57 HOH HOH . F 4 HOH A 58 491 58 HOH HOH . F 4 HOH A 59 492 59 HOH HOH . F 4 HOH A 60 493 60 HOH HOH . F 4 HOH A 61 494 61 HOH HOH . F 4 HOH A 62 495 62 HOH HOH . F 4 HOH A 63 496 63 HOH HOH . F 4 HOH A 64 497 64 HOH HOH . F 4 HOH A 65 498 65 HOH HOH . F 4 HOH A 66 499 66 HOH HOH . F 4 HOH A 67 500 67 HOH HOH . F 4 HOH A 68 501 68 HOH HOH . F 4 HOH A 69 502 69 HOH HOH . F 4 HOH A 70 503 70 HOH HOH . F 4 HOH A 71 504 71 HOH HOH . F 4 HOH A 72 505 72 HOH HOH . F 4 HOH A 73 506 73 HOH HOH . F 4 HOH A 74 507 74 HOH HOH . F 4 HOH A 75 508 75 HOH HOH . F 4 HOH A 76 509 76 HOH HOH . F 4 HOH A 77 510 77 HOH HOH . F 4 HOH A 78 511 78 HOH HOH . F 4 HOH A 79 512 79 HOH HOH . F 4 HOH A 80 513 80 HOH HOH . F 4 HOH A 81 514 81 HOH HOH . F 4 HOH A 82 515 82 HOH HOH . F 4 HOH A 83 516 83 HOH HOH . F 4 HOH A 84 517 84 HOH HOH . F 4 HOH A 85 518 85 HOH HOH . F 4 HOH A 86 519 86 HOH HOH . F 4 HOH A 87 520 87 HOH HOH . F 4 HOH A 88 521 88 HOH HOH . F 4 HOH A 89 522 89 HOH HOH . F 4 HOH A 90 523 90 HOH HOH . F 4 HOH A 91 524 91 HOH HOH . F 4 HOH A 92 525 92 HOH HOH . F 4 HOH A 93 526 93 HOH HOH . F 4 HOH A 94 527 94 HOH HOH . F 4 HOH A 95 528 95 HOH HOH . F 4 HOH A 96 529 96 HOH HOH . F 4 HOH A 97 530 97 HOH HOH . F 4 HOH A 98 531 98 HOH HOH . F 4 HOH A 99 532 99 HOH HOH . F 4 HOH A 100 533 100 HOH HOH . F 4 HOH A 101 534 101 HOH HOH . F 4 HOH A 102 535 102 HOH HOH . F 4 HOH A 103 536 103 HOH HOH . F 4 HOH A 104 537 104 HOH HOH . F 4 HOH A 105 538 105 HOH HOH . F 4 HOH A 106 539 106 HOH HOH . F 4 HOH A 107 540 107 HOH HOH . F 4 HOH A 108 541 108 HOH HOH . F 4 HOH A 109 542 109 HOH HOH . F 4 HOH A 110 543 110 HOH HOH . F 4 HOH A 111 544 111 HOH HOH . F 4 HOH A 112 545 112 HOH HOH . F 4 HOH A 113 546 113 HOH HOH . F 4 HOH A 114 547 114 HOH HOH . F 4 HOH A 115 548 115 HOH HOH . F 4 HOH A 116 549 116 HOH HOH . F 4 HOH A 117 550 117 HOH HOH . F 4 HOH A 118 551 118 HOH HOH . F 4 HOH A 119 552 119 HOH HOH . F 4 HOH A 120 553 120 HOH HOH . F 4 HOH A 121 554 121 HOH HOH . F 4 HOH A 122 555 122 HOH HOH . F 4 HOH A 123 556 123 HOH HOH . F 4 HOH A 124 557 124 HOH HOH . F 4 HOH A 125 558 125 HOH HOH . F 4 HOH A 126 559 126 HOH HOH . F 4 HOH A 127 560 127 HOH HOH . F 4 HOH A 128 561 128 HOH HOH . F 4 HOH A 129 562 129 HOH HOH . F 4 HOH A 130 563 130 HOH HOH . F 4 HOH A 131 564 131 HOH HOH . F 4 HOH A 132 565 132 HOH HOH . F 4 HOH A 133 566 133 HOH HOH . F 4 HOH A 134 567 134 HOH HOH . F 4 HOH A 135 568 135 HOH HOH . F 4 HOH A 136 569 136 HOH HOH . F 4 HOH A 137 570 137 HOH HOH . F 4 HOH A 138 571 138 HOH HOH . F 4 HOH A 139 572 139 HOH HOH . F 4 HOH A 140 573 140 HOH HOH . F 4 HOH A 141 574 141 HOH HOH . F 4 HOH A 142 575 142 HOH HOH . F 4 HOH A 143 576 143 HOH HOH . F 4 HOH A 144 577 144 HOH HOH . F 4 HOH A 145 578 145 HOH HOH . F 4 HOH A 146 579 146 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0.511 _atom_site.Cartn_y 44.696 _atom_site.Cartn_z 38.22 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 433 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #