data_1BB0 # _model_server_result.job_id KRXUUkNryDVN9aPMZxaiQQ _model_server_result.datetime_utc '2024-12-27 01:02:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":650}' # _entry.id 1BB0 # _exptl.entry_id 1BB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.7 _cell.angle_gamma 90 _cell.entry_id 1BB0 _cell.length_a 71.14 _cell.length_b 72.26 _cell.length_c 72.73 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 1 1_555 B SG CYS 119 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf2 B SG CYS 28 B CYS 42 1_555 B SG CYS 44 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? disulf ? disulf3 B SG CYS 173 B CYS 168 1_555 B SG CYS 187 B CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf4 B SG CYS 201 B CYS 191 1_555 B SG CYS 231 B CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? covale ? covale1 C C GLU 11 C GLU 62 1_555 C N TYS 12 C TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 B O LYS 174 B LYS 169 1_555 E NA NA . B NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 B O THR 177 B THR 172 1_555 E NA NA . B NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc3 B O PHE 215 B PHE 204 4_546 E NA NA . B NA 651 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.298 ? metalc ? metalc4 B O ARG 233 B ARG 221 1_555 D NA NA . B NA 650 1_555 A ? ? ? ? ? ? ? ? ? ? ? 2.495 ? metalc ? metalc5 B O LYS 236 B LYS 224 1_555 D NA NA . B NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc6 H O HOH . B HOH 428 1_555 D NA NA . B NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.534 ? metalc ? metalc7 H O HOH . B HOH 446 1_555 E NA NA . B NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc8 H O HOH . B HOH 473 1_555 D NA NA . B NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.638 ? metalc ? metalc9 H O HOH . B HOH 501 1_555 D NA NA . B NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc10 H O HOH . B HOH 518 1_555 D NA NA . B NA 650 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc11 H O HOH . B HOH 595 1_555 E NA NA . B NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc12 H O HOH . B HOH 596 1_555 E NA NA . B NA 651 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.427 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BB0 _atom_sites.fract_transf_matrix[1][1] 0.014057 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002656 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013993 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 NA B 1 650 650 NA NA . E 4 NA B 1 651 651 NA NA . F 5 0IV B 1 1 1 0IV PMS . G 6 HOH A 1 409 409 HOH HOH . G 6 HOH A 2 431 431 HOH HOH . G 6 HOH A 3 509 509 HOH HOH . G 6 HOH A 4 533 533 HOH HOH . G 6 HOH A 5 534 534 HOH HOH . G 6 HOH A 6 553 553 HOH HOH . G 6 HOH A 7 579 579 HOH HOH . G 6 HOH A 8 592 592 HOH HOH . H 6 HOH B 1 402 402 HOH HOH . H 6 HOH B 2 403 403 HOH HOH . H 6 HOH B 3 404 404 HOH HOH . H 6 HOH B 4 405 405 HOH HOH . H 6 HOH B 5 406 406 HOH HOH . H 6 HOH B 6 407 407 HOH HOH . H 6 HOH B 7 408 408 HOH HOH . H 6 HOH B 8 410 410 HOH HOH . H 6 HOH B 9 411 411 HOH HOH . H 6 HOH B 10 412 412 HOH HOH . H 6 HOH B 11 413 413 HOH HOH . H 6 HOH B 12 414 414 HOH HOH . H 6 HOH B 13 415 415 HOH HOH . H 6 HOH B 14 418 418 HOH HOH . H 6 HOH B 15 419 419 HOH HOH . H 6 HOH B 16 420 420 HOH HOH . H 6 HOH B 17 421 421 HOH HOH . H 6 HOH B 18 424 424 HOH HOH . H 6 HOH B 19 426 426 HOH HOH . H 6 HOH B 20 427 427 HOH HOH . H 6 HOH B 21 428 428 HOH HOH . H 6 HOH B 22 429 429 HOH HOH . H 6 HOH B 23 430 430 HOH HOH . H 6 HOH B 24 432 432 HOH HOH . H 6 HOH B 25 433 433 HOH HOH . H 6 HOH B 26 434 434 HOH HOH . H 6 HOH B 27 436 436 HOH HOH . H 6 HOH B 28 437 437 HOH HOH . H 6 HOH B 29 439 439 HOH HOH . H 6 HOH B 30 440 440 HOH HOH . H 6 HOH B 31 441 441 HOH HOH . H 6 HOH B 32 442 442 HOH HOH . H 6 HOH B 33 443 443 HOH HOH . H 6 HOH B 34 444 444 HOH HOH . H 6 HOH B 35 446 446 HOH HOH . H 6 HOH B 36 447 447 HOH HOH . H 6 HOH B 37 448 448 HOH HOH . H 6 HOH B 38 449 449 HOH HOH . H 6 HOH B 39 450 450 HOH HOH . H 6 HOH B 40 451 451 HOH HOH . H 6 HOH B 41 452 452 HOH HOH . H 6 HOH B 42 453 453 HOH HOH . H 6 HOH B 43 455 455 HOH HOH . H 6 HOH B 44 458 458 HOH HOH . H 6 HOH B 45 459 459 HOH HOH . H 6 HOH B 46 460 460 HOH HOH . H 6 HOH B 47 462 462 HOH HOH . H 6 HOH B 48 463 463 HOH HOH . H 6 HOH B 49 465 465 HOH HOH . H 6 HOH B 50 469 469 HOH HOH . H 6 HOH B 51 471 471 HOH HOH . H 6 HOH B 52 472 472 HOH HOH . H 6 HOH B 53 473 473 HOH HOH . H 6 HOH B 54 476 476 HOH HOH . H 6 HOH B 55 477 477 HOH HOH . H 6 HOH B 56 481 481 HOH HOH . H 6 HOH B 57 485 485 HOH HOH . H 6 HOH B 58 486 486 HOH HOH . H 6 HOH B 59 488 488 HOH HOH . H 6 HOH B 60 489 489 HOH HOH . H 6 HOH B 61 490 490 HOH HOH . H 6 HOH B 62 491 491 HOH HOH . H 6 HOH B 63 492 492 HOH HOH . H 6 HOH B 64 493 493 HOH HOH . H 6 HOH B 65 494 494 HOH HOH . H 6 HOH B 66 495 495 HOH HOH . H 6 HOH B 67 496 496 HOH HOH . H 6 HOH B 68 497 497 HOH HOH . H 6 HOH B 69 498 498 HOH HOH . H 6 HOH B 70 499 499 HOH HOH . H 6 HOH B 71 500 500 HOH HOH . H 6 HOH B 72 501 501 HOH HOH . H 6 HOH B 73 502 502 HOH HOH . H 6 HOH B 74 503 503 HOH HOH . H 6 HOH B 75 504 504 HOH HOH . H 6 HOH B 76 508 508 HOH HOH . H 6 HOH B 77 511 511 HOH HOH . H 6 HOH B 78 512 512 HOH HOH . H 6 HOH B 79 518 518 HOH HOH . H 6 HOH B 80 519 519 HOH HOH . H 6 HOH B 81 521 521 HOH HOH . H 6 HOH B 82 526 526 HOH HOH . H 6 HOH B 83 527 527 HOH HOH . H 6 HOH B 84 528 528 HOH HOH . H 6 HOH B 85 529 529 HOH HOH . H 6 HOH B 86 530 530 HOH HOH . H 6 HOH B 87 531 531 HOH HOH . H 6 HOH B 88 536 536 HOH HOH . H 6 HOH B 89 538 538 HOH HOH . H 6 HOH B 90 539 539 HOH HOH . H 6 HOH B 91 541 541 HOH HOH . H 6 HOH B 92 545 545 HOH HOH . H 6 HOH B 93 546 546 HOH HOH . H 6 HOH B 94 547 547 HOH HOH . H 6 HOH B 95 548 548 HOH HOH . H 6 HOH B 96 549 549 HOH HOH . H 6 HOH B 97 551 551 HOH HOH . H 6 HOH B 98 554 554 HOH HOH . H 6 HOH B 99 555 555 HOH HOH . H 6 HOH B 100 557 557 HOH HOH . H 6 HOH B 101 562 562 HOH HOH . H 6 HOH B 102 563 563 HOH HOH . H 6 HOH B 103 564 564 HOH HOH . H 6 HOH B 104 568 568 HOH HOH . H 6 HOH B 105 570 570 HOH HOH . H 6 HOH B 106 572 572 HOH HOH . H 6 HOH B 107 574 574 HOH HOH . H 6 HOH B 108 575 575 HOH HOH . H 6 HOH B 109 577 577 HOH HOH . H 6 HOH B 110 580 580 HOH HOH . H 6 HOH B 111 581 581 HOH HOH . H 6 HOH B 112 582 582 HOH HOH . H 6 HOH B 113 583 583 HOH HOH . H 6 HOH B 114 585 585 HOH HOH . H 6 HOH B 115 586 586 HOH HOH . H 6 HOH B 116 588 588 HOH HOH . H 6 HOH B 117 590 590 HOH HOH . H 6 HOH B 118 591 591 HOH HOH . H 6 HOH B 119 593 593 HOH HOH . H 6 HOH B 120 595 595 HOH HOH . H 6 HOH B 121 596 596 HOH HOH . I 6 HOH C 1 457 457 HOH HOH . I 6 HOH C 2 507 507 HOH HOH . I 6 HOH C 3 537 537 HOH HOH . I 6 HOH C 4 556 556 HOH HOH . I 6 HOH C 5 565 565 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x 5.549 _atom_site.Cartn_y -13.905 _atom_site.Cartn_z 30.876 _atom_site.occupancy 0.75 _atom_site.B_iso_or_equiv 28.17 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 650 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #