data_1BBU # _model_server_result.job_id fZyUThptZ8Vn8NKIfoaq1Q _model_server_result.datetime_utc '2024-11-15 15:39:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":505}' # _entry.id 1BBU # _exptl.entry_id 1BBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 147.195 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description LYSINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BBU _cell.length_a 181.82 _cell.length_b 181.82 _cell.length_c 93.07 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 90.91 157.460739 77.558333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H15 N2 O2 1' _chem_comp.formula_weight 147.195 _chem_comp.id LYS _chem_comp.mon_nstd_flag y _chem_comp.name LYSINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA LYS sing 194 n n N H LYS sing 195 n n N H2 LYS sing 196 n n CA C LYS sing 197 n n CA CB LYS sing 198 n n CA HA LYS sing 199 n n C O LYS doub 200 n n C OXT LYS sing 201 n n CB CG LYS sing 202 n n CB HB2 LYS sing 203 n n CB HB3 LYS sing 204 n n CG CD LYS sing 205 n n CG HG2 LYS sing 206 n n CG HG3 LYS sing 207 n n CD CE LYS sing 208 n n CD HD2 LYS sing 209 n n CD HD3 LYS sing 210 n n CE NZ LYS sing 211 n n CE HE2 LYS sing 212 n n CE HE3 LYS sing 213 n n NZ HZ1 LYS sing 214 n n NZ HZ2 LYS sing 215 n n NZ HZ3 LYS sing 216 n n OXT HXT LYS sing 217 n n # _atom_sites.entry_id 1BBU _atom_sites.fract_transf_matrix[1][1] 0.0055 _atom_sites.fract_transf_matrix[1][2] 0.003175 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006351 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010745 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LYS A 1 505 1 LYS AAK . C 3 HOH A 1 506 1 HOH HOH . C 3 HOH A 2 507 3 HOH HOH . C 3 HOH A 3 508 4 HOH HOH . C 3 HOH A 4 509 5 HOH HOH . C 3 HOH A 5 510 6 HOH HOH . C 3 HOH A 6 511 7 HOH HOH . C 3 HOH A 7 512 8 HOH HOH . C 3 HOH A 8 513 9 HOH HOH . C 3 HOH A 9 514 10 HOH HOH . C 3 HOH A 10 515 11 HOH HOH . C 3 HOH A 11 516 12 HOH HOH . C 3 HOH A 12 517 14 HOH HOH . C 3 HOH A 13 518 15 HOH HOH . C 3 HOH A 14 519 16 HOH HOH . C 3 HOH A 15 520 17 HOH HOH . C 3 HOH A 16 521 18 HOH HOH . C 3 HOH A 17 522 19 HOH HOH . C 3 HOH A 18 523 20 HOH HOH . C 3 HOH A 19 524 22 HOH HOH . C 3 HOH A 20 525 23 HOH HOH . C 3 HOH A 21 526 24 HOH HOH . C 3 HOH A 22 527 25 HOH HOH . C 3 HOH A 23 528 26 HOH HOH . C 3 HOH A 24 529 27 HOH HOH . C 3 HOH A 25 530 28 HOH HOH . C 3 HOH A 26 531 29 HOH HOH . C 3 HOH A 27 532 30 HOH HOH . C 3 HOH A 28 533 31 HOH HOH . C 3 HOH A 29 534 32 HOH HOH . C 3 HOH A 30 535 33 HOH HOH . C 3 HOH A 31 536 34 HOH HOH . C 3 HOH A 32 537 35 HOH HOH . C 3 HOH A 33 538 37 HOH HOH . C 3 HOH A 34 539 38 HOH HOH . C 3 HOH A 35 540 41 HOH HOH . C 3 HOH A 36 541 42 HOH HOH . C 3 HOH A 37 542 43 HOH HOH . C 3 HOH A 38 543 44 HOH HOH . C 3 HOH A 39 544 45 HOH HOH . C 3 HOH A 40 545 46 HOH HOH . C 3 HOH A 41 546 47 HOH HOH . C 3 HOH A 42 547 48 HOH HOH . C 3 HOH A 43 548 49 HOH HOH . C 3 HOH A 44 549 50 HOH HOH . C 3 HOH A 45 550 53 HOH HOH . C 3 HOH A 46 551 54 HOH HOH . C 3 HOH A 47 552 55 HOH HOH . C 3 HOH A 48 553 56 HOH HOH . C 3 HOH A 49 554 57 HOH HOH . C 3 HOH A 50 555 58 HOH HOH . C 3 HOH A 51 556 59 HOH HOH . C 3 HOH A 52 557 60 HOH HOH . C 3 HOH A 53 558 61 HOH HOH . C 3 HOH A 54 559 62 HOH HOH . C 3 HOH A 55 560 64 HOH HOH . C 3 HOH A 56 561 65 HOH HOH . C 3 HOH A 57 562 66 HOH HOH . C 3 HOH A 58 563 68 HOH HOH . C 3 HOH A 59 564 72 HOH HOH . C 3 HOH A 60 565 73 HOH HOH . C 3 HOH A 61 566 74 HOH HOH . C 3 HOH A 62 567 81 HOH HOH . C 3 HOH A 63 568 82 HOH HOH . C 3 HOH A 64 569 83 HOH HOH . C 3 HOH A 65 570 84 HOH HOH . C 3 HOH A 66 571 85 HOH HOH . C 3 HOH A 67 572 86 HOH HOH . C 3 HOH A 68 573 87 HOH HOH . C 3 HOH A 69 574 88 HOH HOH . C 3 HOH A 70 575 89 HOH HOH . C 3 HOH A 71 576 90 HOH HOH . C 3 HOH A 72 577 92 HOH HOH . C 3 HOH A 73 578 94 HOH HOH . C 3 HOH A 74 579 95 HOH HOH . C 3 HOH A 75 580 96 HOH HOH . C 3 HOH A 76 581 97 HOH HOH . C 3 HOH A 77 582 98 HOH HOH . C 3 HOH A 78 583 99 HOH HOH . C 3 HOH A 79 584 100 HOH HOH . C 3 HOH A 80 585 101 HOH HOH . C 3 HOH A 81 586 102 HOH HOH . C 3 HOH A 82 587 103 HOH HOH . C 3 HOH A 83 588 105 HOH HOH . C 3 HOH A 84 589 106 HOH HOH . C 3 HOH A 85 590 107 HOH HOH . C 3 HOH A 86 591 108 HOH HOH . C 3 HOH A 87 592 109 HOH HOH . C 3 HOH A 88 593 110 HOH HOH . C 3 HOH A 89 594 111 HOH HOH . C 3 HOH A 90 595 112 HOH HOH . C 3 HOH A 91 596 113 HOH HOH . C 3 HOH A 92 597 120 HOH HOH . C 3 HOH A 93 598 121 HOH HOH . C 3 HOH A 94 599 122 HOH HOH . C 3 HOH A 95 600 123 HOH HOH . C 3 HOH A 96 601 124 HOH HOH . C 3 HOH A 97 602 125 HOH HOH . C 3 HOH A 98 603 127 HOH HOH . C 3 HOH A 99 604 129 HOH HOH . C 3 HOH A 100 605 132 HOH HOH . C 3 HOH A 101 606 133 HOH HOH . C 3 HOH A 102 607 134 HOH HOH . C 3 HOH A 103 608 135 HOH HOH . C 3 HOH A 104 609 136 HOH HOH . C 3 HOH A 105 610 137 HOH HOH . C 3 HOH A 106 611 138 HOH HOH . C 3 HOH A 107 612 140 HOH HOH . C 3 HOH A 108 613 141 HOH HOH . C 3 HOH A 109 614 142 HOH HOH . C 3 HOH A 110 615 143 HOH HOH . C 3 HOH A 111 616 146 HOH HOH . C 3 HOH A 112 617 147 HOH HOH . C 3 HOH A 113 618 148 HOH HOH . C 3 HOH A 114 619 149 HOH HOH . C 3 HOH A 115 620 150 HOH HOH . C 3 HOH A 116 621 151 HOH HOH . C 3 HOH A 117 622 152 HOH HOH . C 3 HOH A 118 623 153 HOH HOH . C 3 HOH A 119 624 160 HOH HOH . C 3 HOH A 120 625 161 HOH HOH . C 3 HOH A 121 626 162 HOH HOH . C 3 HOH A 122 627 163 HOH HOH . C 3 HOH A 123 628 164 HOH HOH . C 3 HOH A 124 629 165 HOH HOH . C 3 HOH A 125 630 166 HOH HOH . C 3 HOH A 126 631 167 HOH HOH . C 3 HOH A 127 632 168 HOH HOH . C 3 HOH A 128 633 169 HOH HOH . C 3 HOH A 129 634 170 HOH HOH . C 3 HOH A 130 635 172 HOH HOH . C 3 HOH A 131 636 173 HOH HOH . C 3 HOH A 132 637 174 HOH HOH . C 3 HOH A 133 638 175 HOH HOH . C 3 HOH A 134 639 176 HOH HOH . C 3 HOH A 135 640 177 HOH HOH . C 3 HOH A 136 641 178 HOH HOH . C 3 HOH A 137 642 179 HOH HOH . C 3 HOH A 138 643 180 HOH HOH . C 3 HOH A 139 644 181 HOH HOH . C 3 HOH A 140 645 182 HOH HOH . C 3 HOH A 141 646 183 HOH HOH . C 3 HOH A 142 647 184 HOH HOH . C 3 HOH A 143 648 185 HOH HOH . C 3 HOH A 144 649 186 HOH HOH . C 3 HOH A 145 650 187 HOH HOH . C 3 HOH A 146 651 188 HOH HOH . C 3 HOH A 147 652 189 HOH HOH . C 3 HOH A 148 653 190 HOH HOH . C 3 HOH A 149 654 191 HOH HOH . C 3 HOH A 150 655 192 HOH HOH . C 3 HOH A 151 656 193 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N LYS . . . B 2 -19.005 133.706 39.858 1 49 ? N LYS 505 A 1 HETATM 2 C CA LYS . . . B 2 -19.154 134.481 41.087 1 47.77 ? CA LYS 505 A 1 HETATM 3 C C LYS . . . B 2 -18.893 133.656 42.362 1 55.54 ? C LYS 505 A 1 HETATM 4 O O LYS . . . B 2 -18.691 132.428 42.253 1 55.62 ? O LYS 505 A 1 HETATM 5 C CB LYS . . . B 2 -20.546 135.122 41.139 1 42.17 ? CB LYS 505 A 1 HETATM 6 C CG LYS . . . B 2 -20.816 136.187 40.071 1 38.49 ? CG LYS 505 A 1 HETATM 7 C CD LYS . . . B 2 -19.842 137.373 40.167 1 43.74 ? CD LYS 505 A 1 HETATM 8 C CE LYS . . . B 2 -20.22 138.494 39.2 1 38.63 ? CE LYS 505 A 1 HETATM 9 N NZ LYS . . . B 2 -19.833 138.207 37.808 1 44.82 ? NZ LYS 505 A 1 HETATM 10 O OXT LYS . . . B 2 -18.867 134.254 43.466 1 61.24 ? OXT LYS 505 A 1 # _model_server_stats.io_time_ms 50 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 10 #