data_1BC5
#
_model_server_result.job_id            SE1ILYmVs980cBAgQQ183g 
_model_server_result.datetime_utc      '2025-02-27 15:59:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bc5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":287}' 
#
_entry.id    1BC5 
#
_exptl.entry_id    1BC5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BC5 
_cell.length_a            65.91 
_cell.length_b            70.58 
_cell.length_c            72.79 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BC5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ACE 1 T ACE 0 1_555 B N ASN 2 T ASN 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A NE2 HIS 99 A HIS 114 3_745 C CO CO . A CO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? 
metalc ? metalc2 A NE2 HIS 177 A HIS 192 1_555 C CO CO . A CO 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.39 ? 
metalc ? metalc3 C CO CO . A CO 300 1_555 E O HOH . A HOH 388 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? 
metalc ? metalc4 C CO CO . A CO 300 1_555 F O HOH . T HOH 27 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 283 n n 
N HN1 SAH sing 284 n n 
N HN2 SAH sing 285 n n 
CA CB SAH sing 286 n n 
CA C SAH sing 287 n n 
CA HA SAH sing 288 n n 
CB CG SAH sing 289 n n 
CB HB1 SAH sing 290 n n 
CB HB2 SAH sing 291 n n 
CG SD SAH sing 292 n n 
CG HG1 SAH sing 293 n n 
CG HG2 SAH sing 294 n n 
SD C5' SAH sing 295 n n 
C O SAH doub 296 n n 
C OXT SAH sing 297 n n 
OXT HXT SAH sing 298 n n 
C5' C4' SAH sing 299 n n 
C5' "H5'1" SAH sing 300 n n 
C5' "H5'2" SAH sing 301 n n 
C4' O4' SAH sing 302 n n 
C4' C3' SAH sing 303 n n 
C4' H4' SAH sing 304 n n 
O4' C1' SAH sing 305 n n 
C3' O3' SAH sing 306 n n 
C3' C2' SAH sing 307 n n 
C3' H3' SAH sing 308 n n 
O3' HO3' SAH sing 309 n n 
C2' O2' SAH sing 310 n n 
C2' C1' SAH sing 311 n n 
C2' H2' SAH sing 312 n n 
O2' HO2' SAH sing 313 n n 
C1' N9 SAH sing 314 n n 
C1' H1' SAH sing 315 n n 
N9 C8 SAH sing 316 n y 
N9 C4 SAH sing 317 n y 
C8 N7 SAH doub 318 n y 
C8 H8 SAH sing 319 n n 
N7 C5 SAH sing 320 n y 
C5 C6 SAH sing 321 n y 
C5 C4 SAH doub 322 n y 
C6 N6 SAH sing 323 n n 
C6 N1 SAH doub 324 n y 
N6 HN61 SAH sing 325 n n 
N6 HN62 SAH sing 326 n n 
N1 C2 SAH sing 327 n y 
C2 N3 SAH doub 328 n y 
C2 H2 SAH sing 329 n n 
N3 C4 SAH sing 330 n y 
#
_atom_sites.entry_id                     1BC5 
_atom_sites.fract_transf_matrix[1][1]    0.015172 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014168 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013738 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 CO A 1 300 300 CO CO . 
D 4 SAH A 1 287 287 SAH SAH . 
E 5 HOH A 1 301 1 HOH HOH . 
E 5 HOH A 2 302 2 HOH HOH . 
E 5 HOH A 3 303 3 HOH HOH . 
E 5 HOH A 4 304 4 HOH HOH . 
E 5 HOH A 5 305 5 HOH HOH . 
E 5 HOH A 6 306 6 HOH HOH . 
E 5 HOH A 7 307 7 HOH HOH . 
E 5 HOH A 8 308 8 HOH HOH . 
E 5 HOH A 9 309 9 HOH HOH . 
E 5 HOH A 10 310 10 HOH HOH . 
E 5 HOH A 11 311 11 HOH HOH . 
E 5 HOH A 12 312 12 HOH HOH . 
E 5 HOH A 13 313 13 HOH HOH . 
E 5 HOH A 14 314 14 HOH HOH . 
E 5 HOH A 15 315 15 HOH HOH . 
E 5 HOH A 16 316 16 HOH HOH . 
E 5 HOH A 17 317 17 HOH HOH . 
E 5 HOH A 18 318 18 HOH HOH . 
E 5 HOH A 19 319 19 HOH HOH . 
E 5 HOH A 20 320 20 HOH HOH . 
E 5 HOH A 21 321 21 HOH HOH . 
E 5 HOH A 22 322 22 HOH HOH . 
E 5 HOH A 23 323 23 HOH HOH . 
E 5 HOH A 24 324 24 HOH HOH . 
E 5 HOH A 25 325 25 HOH HOH . 
E 5 HOH A 26 326 28 HOH HOH . 
E 5 HOH A 27 327 29 HOH HOH . 
E 5 HOH A 28 328 30 HOH HOH . 
E 5 HOH A 29 329 31 HOH HOH . 
E 5 HOH A 30 330 32 HOH HOH . 
E 5 HOH A 31 331 33 HOH HOH . 
E 5 HOH A 32 332 34 HOH HOH . 
E 5 HOH A 33 333 35 HOH HOH . 
E 5 HOH A 34 334 36 HOH HOH . 
E 5 HOH A 35 335 37 HOH HOH . 
E 5 HOH A 36 336 38 HOH HOH . 
E 5 HOH A 37 337 39 HOH HOH . 
E 5 HOH A 38 338 40 HOH HOH . 
E 5 HOH A 39 339 41 HOH HOH . 
E 5 HOH A 40 340 42 HOH HOH . 
E 5 HOH A 41 341 43 HOH HOH . 
E 5 HOH A 42 342 44 HOH HOH . 
E 5 HOH A 43 343 45 HOH HOH . 
E 5 HOH A 44 344 46 HOH HOH . 
E 5 HOH A 45 345 47 HOH HOH . 
E 5 HOH A 46 346 48 HOH HOH . 
E 5 HOH A 47 347 49 HOH HOH . 
E 5 HOH A 48 348 50 HOH HOH . 
E 5 HOH A 49 349 51 HOH HOH . 
E 5 HOH A 50 350 52 HOH HOH . 
E 5 HOH A 51 351 53 HOH HOH . 
E 5 HOH A 52 352 54 HOH HOH . 
E 5 HOH A 53 353 55 HOH HOH . 
E 5 HOH A 54 354 56 HOH HOH . 
E 5 HOH A 55 355 57 HOH HOH . 
E 5 HOH A 56 356 58 HOH HOH . 
E 5 HOH A 57 357 59 HOH HOH . 
E 5 HOH A 58 358 60 HOH HOH . 
E 5 HOH A 59 359 61 HOH HOH . 
E 5 HOH A 60 360 62 HOH HOH . 
E 5 HOH A 61 361 63 HOH HOH . 
E 5 HOH A 62 362 64 HOH HOH . 
E 5 HOH A 63 363 65 HOH HOH . 
E 5 HOH A 64 364 66 HOH HOH . 
E 5 HOH A 65 365 67 HOH HOH . 
E 5 HOH A 66 366 68 HOH HOH . 
E 5 HOH A 67 367 69 HOH HOH . 
E 5 HOH A 68 368 70 HOH HOH . 
E 5 HOH A 69 369 71 HOH HOH . 
E 5 HOH A 70 370 72 HOH HOH . 
E 5 HOH A 71 371 73 HOH HOH . 
E 5 HOH A 72 372 74 HOH HOH . 
E 5 HOH A 73 373 75 HOH HOH . 
E 5 HOH A 74 374 76 HOH HOH . 
E 5 HOH A 75 375 77 HOH HOH . 
E 5 HOH A 76 376 78 HOH HOH . 
E 5 HOH A 77 377 79 HOH HOH . 
E 5 HOH A 78 378 80 HOH HOH . 
E 5 HOH A 79 379 81 HOH HOH . 
E 5 HOH A 80 380 82 HOH HOH . 
E 5 HOH A 81 381 86 HOH HOH . 
E 5 HOH A 82 382 88 HOH HOH . 
E 5 HOH A 83 383 89 HOH HOH . 
E 5 HOH A 84 384 90 HOH HOH . 
E 5 HOH A 85 385 91 HOH HOH . 
E 5 HOH A 86 386 93 HOH HOH . 
E 5 HOH A 87 387 94 HOH HOH . 
E 5 HOH A 88 388 95 HOH HOH . 
E 5 HOH A 89 389 96 HOH HOH . 
E 5 HOH A 90 390 97 HOH HOH . 
E 5 HOH A 91 391 98 HOH HOH . 
E 5 HOH A 92 392 99 HOH HOH . 
E 5 HOH A 93 393 100 HOH HOH . 
E 5 HOH A 94 394 101 HOH HOH . 
E 5 HOH A 95 395 102 HOH HOH . 
E 5 HOH A 96 396 103 HOH HOH . 
E 5 HOH A 97 397 104 HOH HOH . 
E 5 HOH A 98 398 105 HOH HOH . 
E 5 HOH A 99 399 106 HOH HOH . 
E 5 HOH A 100 400 107 HOH HOH . 
E 5 HOH A 101 401 108 HOH HOH . 
E 5 HOH A 102 402 109 HOH HOH . 
E 5 HOH A 103 403 110 HOH HOH . 
E 5 HOH A 104 404 111 HOH HOH . 
E 5 HOH A 105 405 112 HOH HOH . 
E 5 HOH A 106 406 113 HOH HOH . 
E 5 HOH A 107 407 114 HOH HOH . 
E 5 HOH A 108 408 115 HOH HOH . 
E 5 HOH A 109 409 116 HOH HOH . 
E 5 HOH A 110 410 117 HOH HOH . 
E 5 HOH A 111 411 118 HOH HOH . 
E 5 HOH A 112 412 121 HOH HOH . 
F 5 HOH T 1 26 26 HOH HOH . 
F 5 HOH T 2 27 27 HOH HOH . 
F 5 HOH T 3 83 83 HOH HOH . 
F 5 HOH T 4 84 84 HOH HOH . 
F 5 HOH T 5 85 85 HOH HOH . 
F 5 HOH T 6 87 87 HOH HOH . 
F 5 HOH T 7 92 92 HOH HOH . 
F 5 HOH T 8 119 119 HOH HOH . 
F 5 HOH T 9 120 120 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 4 48.914 42.07 22.636 1 17.07 ? N SAH 287 A 1 
HETATM 2 C CA SAH . . . D 4 49.222 41.626 21.287 1 17.22 ? CA SAH 287 A 1 
HETATM 3 C CB SAH . . . D 4 49.324 40.085 21.221 1 15.55 ? CB SAH 287 A 1 
HETATM 4 C CG SAH . . . D 4 48.004 39.348 21.29 1 14.68 ? CG SAH 287 A 1 
HETATM 5 S SD SAH . . . D 4 48.163 37.573 21.292 1 26.61 ? SD SAH 287 A 1 
HETATM 6 C C SAH . . . D 4 48.142 42.131 20.322 1 18.39 ? C SAH 287 A 1 
HETATM 7 O O SAH . . . D 4 47.333 42.996 20.742 1 20.59 ? O SAH 287 A 1 
HETATM 8 O OXT SAH . . . D 4 48.338 41.94 19.106 1 22.21 ? OXT SAH 287 A 1 
HETATM 9 C C5' SAH . . . D 4 47.98 37.204 23.074 1 17.52 ? C5' SAH 287 A 1 
HETATM 10 C C4' SAH . . . D 4 49.162 36.657 23.868 1 18.76 ? C4' SAH 287 A 1 
HETATM 11 O O4' SAH . . . D 4 48.796 36.512 25.256 1 18.43 ? O4' SAH 287 A 1 
HETATM 12 C C3' SAH . . . D 4 49.663 35.287 23.424 1 18.78 ? C3' SAH 287 A 1 
HETATM 13 O O3' SAH . . . D 4 50.909 35.462 22.739 1 18.28 ? O3' SAH 287 A 1 
HETATM 14 C C2' SAH . . . D 4 49.854 34.46 24.708 1 16.44 ? C2' SAH 287 A 1 
HETATM 15 O O2' SAH . . . D 4 51.098 33.832 24.86 1 18.65 ? O2' SAH 287 A 1 
HETATM 16 C C1' SAH . . . D 4 49.58 35.489 25.811 1 18.88 ? C1' SAH 287 A 1 
HETATM 17 N N9 SAH . . . D 4 49.005 35.023 27.068 1 18.31 ? N9 SAH 287 A 1 
HETATM 18 C C8 SAH . . . D 4 47.982 34.134 27.307 1 17.86 ? C8 SAH 287 A 1 
HETATM 19 N N7 SAH . . . D 4 47.793 33.883 28.578 1 19.94 ? N7 SAH 287 A 1 
HETATM 20 C C5 SAH . . . D 4 48.74 34.671 29.221 1 18 ? C5 SAH 287 A 1 
HETATM 21 C C6 SAH . . . D 4 49.07 34.848 30.576 1 17.17 ? C6 SAH 287 A 1 
HETATM 22 N N6 SAH . . . D 4 48.481 34.187 31.573 1 14.77 ? N6 SAH 287 A 1 
HETATM 23 N N1 SAH . . . D 4 50.047 35.728 30.875 1 17.21 ? N1 SAH 287 A 1 
HETATM 24 C C2 SAH . . . D 4 50.653 36.382 29.876 1 15.3 ? C2 SAH 287 A 1 
HETATM 25 N N3 SAH . . . D 4 50.445 36.29 28.564 1 16.77 ? N3 SAH 287 A 1 
HETATM 26 C C4 SAH . . . D 4 49.469 35.404 28.3 1 17.48 ? C4 SAH 287 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           280 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           26 
#