data_1BCC # _model_server_result.job_id ehRTog5jzJBod3832Mq7kg _model_server_result.datetime_utc '2024-10-19 01:33:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"P","auth_seq_id":243}' # _entry.id 1BCC # _exptl.entry_id 1BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCC _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 L N N ? 11 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1BCC _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 BOG D 1 242 8 BOG BOG . P 11 HEM D 1 243 3 HEM HEM . Q 15 FES E 1 197 4 FES FES . R 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . P 11 2.88 158.894 68.057 1 57.82 ? CHA HEM 243 D 1 HETATM 2 C CHB HEM . . . P 11 5.38 158.833 64.131 1 53.01 ? CHB HEM 243 D 1 HETATM 3 C CHC HEM . . . P 11 5.402 163.472 64.047 1 57.33 ? CHC HEM 243 D 1 HETATM 4 C CHD HEM . . . P 11 3.252 163.546 68.255 1 58.45 ? CHD HEM 243 D 1 HETATM 5 C C1A HEM . . . P 11 3.577 158.464 66.994 1 56.11 ? C1A HEM 243 D 1 HETATM 6 C C2A HEM . . . P 11 3.842 157.077 66.695 1 55.41 ? C2A HEM 243 D 1 HETATM 7 C C3A HEM . . . P 11 4.499 157.041 65.548 1 54.26 ? C3A HEM 243 D 1 HETATM 8 C C4A HEM . . . P 11 4.721 158.44 65.217 1 54.09 ? C4A HEM 243 D 1 HETATM 9 C CMA HEM . . . P 11 4.845 155.743 64.848 1 50.71 ? CMA HEM 243 D 1 HETATM 10 C CAA HEM . . . P 11 3.514 155.873 67.496 1 54.86 ? CAA HEM 243 D 1 HETATM 11 C CBA HEM . . . P 11 2.214 155.193 67.199 1 54.3 ? CBA HEM 243 D 1 HETATM 12 C CGA HEM . . . P 11 1.903 154.15 68.233 1 56.75 ? CGA HEM 243 D 1 HETATM 13 O O1A HEM . . . P 11 1.816 154.504 69.429 1 53.07 ? O1A HEM 243 D 1 HETATM 14 O O2A HEM . . . P 11 1.755 152.977 67.852 1 58.93 ? O2A HEM 243 D 1 HETATM 15 C C1B HEM . . . P 11 5.556 160.097 63.757 1 51.87 ? C1B HEM 243 D 1 HETATM 16 C C2B HEM . . . P 11 6.372 160.434 62.64 1 51.22 ? C2B HEM 243 D 1 HETATM 17 C C3B HEM . . . P 11 6.328 161.759 62.551 1 54.25 ? C3B HEM 243 D 1 HETATM 18 C C4B HEM . . . P 11 5.544 162.186 63.676 1 54.39 ? C4B HEM 243 D 1 HETATM 19 C CMB HEM . . . P 11 7.17 159.512 61.761 1 46.48 ? CMB HEM 243 D 1 HETATM 20 C CAB HEM . . . P 11 7.03 162.764 61.655 1 60.41 ? CAB HEM 243 D 1 HETATM 21 C CBB HEM . . . P 11 6.639 162.55 60.211 1 60.52 ? CBB HEM 243 D 1 HETATM 22 C C1C HEM . . . P 11 4.793 163.888 65.203 1 59.71 ? C1C HEM 243 D 1 HETATM 23 C C2C HEM . . . P 11 4.697 165.284 65.578 1 59.45 ? C2C HEM 243 D 1 HETATM 24 C C3C HEM . . . P 11 4.204 165.32 66.804 1 60.41 ? C3C HEM 243 D 1 HETATM 25 C C4C HEM . . . P 11 3.858 163.944 67.128 1 58.7 ? C4C HEM 243 D 1 HETATM 26 C CMC HEM . . . P 11 5.072 166.521 64.81 1 60.25 ? CMC HEM 243 D 1 HETATM 27 C CAC HEM . . . P 11 4.058 166.484 67.755 1 61.97 ? CAC HEM 243 D 1 HETATM 28 C CBC HEM . . . P 11 3.393 167.745 67.286 1 65.2 ? CBC HEM 243 D 1 HETATM 29 C C1D HEM . . . P 11 2.931 162.28 68.525 1 58.21 ? C1D HEM 243 D 1 HETATM 30 C C2D HEM . . . P 11 2.12 161.912 69.66 1 60.44 ? C2D HEM 243 D 1 HETATM 31 C C3D HEM . . . P 11 1.841 160.614 69.531 1 62.49 ? C3D HEM 243 D 1 HETATM 32 C C4D HEM . . . P 11 2.682 160.188 68.408 1 59.62 ? C4D HEM 243 D 1 HETATM 33 C CMD HEM . . . P 11 1.516 162.759 70.751 1 60.59 ? CMD HEM 243 D 1 HETATM 34 C CAD HEM . . . P 11 0.615 159.985 70.212 1 66.08 ? CAD HEM 243 D 1 HETATM 35 C CBD HEM . . . P 11 0.783 158.7 70.996 1 69.48 ? CBD HEM 243 D 1 HETATM 36 C CGD HEM . . . P 11 -0.522 158.216 71.591 1 71.74 ? CGD HEM 243 D 1 HETATM 37 O O1D HEM . . . P 11 -0.497 157.222 72.342 1 74.09 ? O1D HEM 243 D 1 HETATM 38 O O2D HEM . . . P 11 -1.572 158.826 71.306 1 71.96 ? O2D HEM 243 D 1 HETATM 39 N NA HEM . . . P 11 4.137 159.321 66.097 1 56.18 ? NA HEM 243 D 1 HETATM 40 N NB HEM . . . P 11 5.071 161.159 64.442 1 53.93 ? NB HEM 243 D 1 HETATM 41 N NC HEM . . . P 11 4.24 163.044 66.16 1 58.09 ? NC HEM 243 D 1 HETATM 42 N ND HEM . . . P 11 3.238 161.228 67.712 1 57.19 ? ND HEM 243 D 1 HETATM 43 FE FE HEM . . . P 11 4.107 161.172 66.152 1 60.22 ? FE HEM 243 D 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 43 #