data_1BCC
#
_model_server_result.job_id            S5xCU9kPmPjm4Kjlmg0uqQ 
_model_server_result.datetime_utc      '2025-06-20 05:49:06' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bcc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":243}' 
#
_entry.id    1BCC 
#
_exptl.entry_id    1BCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BCC 
_cell.length_a            169.59 
_cell.length_b            182.518 
_cell.length_c            240.573 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    20-MERIC 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               'complete point assembly' 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    (1-2) 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 K N N 
? 11 L N N 
? 11 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     1BCC 
_atom_sites.fract_transf_matrix[1][1]    0.005897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 HEM C 1 381 1 HEM HEM . 
L 11 HEM C 1 382 2 HEM HEM . 
M 12 U10 C 1 383 5 U10 U10 . 
N 13 PEE C 1 384 7 PEE PEE . 
O 14 BOG D 1 242 8 BOG BOG . 
P 11 HEM D 1 243 3 HEM HEM . 
Q 15 FES E 1 197 4 FES FES . 
R 13 PEE E 1 198 6 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . P 11 2.88 158.894 68.057 1 57.82 ? CHA HEM 243 D 1 
HETATM 2 C CHB HEM . . . P 11 5.38 158.833 64.131 1 53.01 ? CHB HEM 243 D 1 
HETATM 3 C CHC HEM . . . P 11 5.402 163.472 64.047 1 57.33 ? CHC HEM 243 D 1 
HETATM 4 C CHD HEM . . . P 11 3.252 163.546 68.255 1 58.45 ? CHD HEM 243 D 1 
HETATM 5 C C1A HEM . . . P 11 3.577 158.464 66.994 1 56.11 ? C1A HEM 243 D 1 
HETATM 6 C C2A HEM . . . P 11 3.842 157.077 66.695 1 55.41 ? C2A HEM 243 D 1 
HETATM 7 C C3A HEM . . . P 11 4.499 157.041 65.548 1 54.26 ? C3A HEM 243 D 1 
HETATM 8 C C4A HEM . . . P 11 4.721 158.44 65.217 1 54.09 ? C4A HEM 243 D 1 
HETATM 9 C CMA HEM . . . P 11 4.845 155.743 64.848 1 50.71 ? CMA HEM 243 D 1 
HETATM 10 C CAA HEM . . . P 11 3.514 155.873 67.496 1 54.86 ? CAA HEM 243 D 1 
HETATM 11 C CBA HEM . . . P 11 2.214 155.193 67.199 1 54.3 ? CBA HEM 243 D 1 
HETATM 12 C CGA HEM . . . P 11 1.903 154.15 68.233 1 56.75 ? CGA HEM 243 D 1 
HETATM 13 O O1A HEM . . . P 11 1.816 154.504 69.429 1 53.07 ? O1A HEM 243 D 1 
HETATM 14 O O2A HEM . . . P 11 1.755 152.977 67.852 1 58.93 ? O2A HEM 243 D 1 
HETATM 15 C C1B HEM . . . P 11 5.556 160.097 63.757 1 51.87 ? C1B HEM 243 D 1 
HETATM 16 C C2B HEM . . . P 11 6.372 160.434 62.64 1 51.22 ? C2B HEM 243 D 1 
HETATM 17 C C3B HEM . . . P 11 6.328 161.759 62.551 1 54.25 ? C3B HEM 243 D 1 
HETATM 18 C C4B HEM . . . P 11 5.544 162.186 63.676 1 54.39 ? C4B HEM 243 D 1 
HETATM 19 C CMB HEM . . . P 11 7.17 159.512 61.761 1 46.48 ? CMB HEM 243 D 1 
HETATM 20 C CAB HEM . . . P 11 7.03 162.764 61.655 1 60.41 ? CAB HEM 243 D 1 
HETATM 21 C CBB HEM . . . P 11 6.639 162.55 60.211 1 60.52 ? CBB HEM 243 D 1 
HETATM 22 C C1C HEM . . . P 11 4.793 163.888 65.203 1 59.71 ? C1C HEM 243 D 1 
HETATM 23 C C2C HEM . . . P 11 4.697 165.284 65.578 1 59.45 ? C2C HEM 243 D 1 
HETATM 24 C C3C HEM . . . P 11 4.204 165.32 66.804 1 60.41 ? C3C HEM 243 D 1 
HETATM 25 C C4C HEM . . . P 11 3.858 163.944 67.128 1 58.7 ? C4C HEM 243 D 1 
HETATM 26 C CMC HEM . . . P 11 5.072 166.521 64.81 1 60.25 ? CMC HEM 243 D 1 
HETATM 27 C CAC HEM . . . P 11 4.058 166.484 67.755 1 61.97 ? CAC HEM 243 D 1 
HETATM 28 C CBC HEM . . . P 11 3.393 167.745 67.286 1 65.2 ? CBC HEM 243 D 1 
HETATM 29 C C1D HEM . . . P 11 2.931 162.28 68.525 1 58.21 ? C1D HEM 243 D 1 
HETATM 30 C C2D HEM . . . P 11 2.12 161.912 69.66 1 60.44 ? C2D HEM 243 D 1 
HETATM 31 C C3D HEM . . . P 11 1.841 160.614 69.531 1 62.49 ? C3D HEM 243 D 1 
HETATM 32 C C4D HEM . . . P 11 2.682 160.188 68.408 1 59.62 ? C4D HEM 243 D 1 
HETATM 33 C CMD HEM . . . P 11 1.516 162.759 70.751 1 60.59 ? CMD HEM 243 D 1 
HETATM 34 C CAD HEM . . . P 11 0.615 159.985 70.212 1 66.08 ? CAD HEM 243 D 1 
HETATM 35 C CBD HEM . . . P 11 0.783 158.7 70.996 1 69.48 ? CBD HEM 243 D 1 
HETATM 36 C CGD HEM . . . P 11 -0.522 158.216 71.591 1 71.74 ? CGD HEM 243 D 1 
HETATM 37 O O1D HEM . . . P 11 -0.497 157.222 72.342 1 74.09 ? O1D HEM 243 D 1 
HETATM 38 O O2D HEM . . . P 11 -1.572 158.826 71.306 1 71.96 ? O2D HEM 243 D 1 
HETATM 39 N NA HEM . . . P 11 4.137 159.321 66.097 1 56.18 ? NA HEM 243 D 1 
HETATM 40 N NB HEM . . . P 11 5.071 161.159 64.442 1 53.93 ? NB HEM 243 D 1 
HETATM 41 N NC HEM . . . P 11 4.24 163.044 66.16 1 58.09 ? NC HEM 243 D 1 
HETATM 42 N ND HEM . . . P 11 3.238 161.228 67.712 1 57.19 ? ND HEM 243 D 1 
HETATM 43 FE FE HEM . . . P 11 4.107 161.172 66.152 1 60.22 ? FE HEM 243 D 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           43 
#