data_1BCC
#
_model_server_result.job_id            BXyYRWrFAbZZ7aCEOQNwfg 
_model_server_result.datetime_utc      '2025-06-20 08:54:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bcc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":381}' 
#
_entry.id    1BCC 
#
_exptl.entry_id    1BCC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          11 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BCC 
_cell.length_a            169.59 
_cell.length_b            182.518 
_cell.length_c            240.573 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BCC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    20-MERIC 
_pdbx_struct_assembly.oligomeric_count      20 
_pdbx_struct_assembly.details               'complete point assembly' 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    (1-2) 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 11 K N N 
? 11 L N N 
? 11 P N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? 
metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? 
metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? 
metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? 
metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 181 n n 
CHA C4D HEM doub 182 n n 
CHA HHA HEM sing 183 n n 
CHB C4A HEM sing 184 n n 
CHB C1B HEM doub 185 n n 
CHB HHB HEM sing 186 n n 
CHC C4B HEM sing 187 n n 
CHC C1C HEM doub 188 n n 
CHC HHC HEM sing 189 n n 
CHD C4C HEM doub 190 n n 
CHD C1D HEM sing 191 n n 
CHD HHD HEM sing 192 n n 
C1A C2A HEM doub 193 n y 
C1A NA HEM sing 194 n y 
C2A C3A HEM sing 195 n y 
C2A CAA HEM sing 196 n n 
C3A C4A HEM doub 197 n y 
C3A CMA HEM sing 198 n n 
C4A NA HEM sing 199 n y 
CMA HMA HEM sing 200 n n 
CMA HMAA HEM sing 201 n n 
CMA HMAB HEM sing 202 n n 
CAA CBA HEM sing 203 n n 
CAA HAA HEM sing 204 n n 
CAA HAAA HEM sing 205 n n 
CBA CGA HEM sing 206 n n 
CBA HBA HEM sing 207 n n 
CBA HBAA HEM sing 208 n n 
CGA O1A HEM doub 209 n n 
CGA O2A HEM sing 210 n n 
C1B C2B HEM sing 211 n n 
C1B NB HEM sing 212 n n 
C2B C3B HEM doub 213 n n 
C2B CMB HEM sing 214 n n 
C3B C4B HEM sing 215 n n 
C3B CAB HEM sing 216 n n 
C4B NB HEM doub 217 n n 
CMB HMB HEM sing 218 n n 
CMB HMBA HEM sing 219 n n 
CMB HMBB HEM sing 220 n n 
CAB CBB HEM doub 221 n n 
CAB HAB HEM sing 222 n n 
CBB HBB HEM sing 223 n n 
CBB HBBA HEM sing 224 n n 
C1C C2C HEM sing 225 n y 
C1C NC HEM sing 226 n y 
C2C C3C HEM doub 227 n y 
C2C CMC HEM sing 228 n n 
C3C C4C HEM sing 229 n y 
C3C CAC HEM sing 230 n n 
C4C NC HEM sing 231 n y 
CMC HMC HEM sing 232 n n 
CMC HMCA HEM sing 233 n n 
CMC HMCB HEM sing 234 n n 
CAC CBC HEM doub 235 n n 
CAC HAC HEM sing 236 n n 
CBC HBC HEM sing 237 n n 
CBC HBCA HEM sing 238 n n 
C1D C2D HEM sing 239 n n 
C1D ND HEM doub 240 n n 
C2D C3D HEM doub 241 n n 
C2D CMD HEM sing 242 n n 
C3D C4D HEM sing 243 n n 
C3D CAD HEM sing 244 n n 
C4D ND HEM sing 245 n n 
CMD HMD HEM sing 246 n n 
CMD HMDA HEM sing 247 n n 
CMD HMDB HEM sing 248 n n 
CAD CBD HEM sing 249 n n 
CAD HAD HEM sing 250 n n 
CAD HADA HEM sing 251 n n 
CBD CGD HEM sing 252 n n 
CBD HBD HEM sing 253 n n 
CBD HBDA HEM sing 254 n n 
CGD O1D HEM doub 255 n n 
CGD O2D HEM sing 256 n n 
O2A H2A HEM sing 257 n n 
O2D H2D HEM sing 258 n n 
FE NA HEM sing 259 n n 
FE NB HEM sing 260 n n 
FE NC HEM sing 261 n n 
FE ND HEM sing 262 n n 
#
_atom_sites.entry_id                     1BCC 
_atom_sites.fract_transf_matrix[1][1]    0.005897 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005479 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004157 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
K 11 HEM C 1 381 1 HEM HEM . 
L 11 HEM C 1 382 2 HEM HEM . 
M 12 U10 C 1 383 5 U10 U10 . 
N 13 PEE C 1 384 7 PEE PEE . 
O 14 BOG D 1 242 8 BOG BOG . 
P 11 HEM D 1 243 3 HEM HEM . 
Q 15 FES E 1 197 4 FES FES . 
R 13 PEE E 1 198 6 PEE PEE . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . K 11 20.82 137.571 77.614 1 51.48 ? CHA HEM 381 C 1 
HETATM 2 C CHB HEM . . . K 11 19.948 132.956 77.322 1 49.23 ? CHB HEM 381 C 1 
HETATM 3 C CHC HEM . . . K 11 24.321 132.244 78.934 1 52.46 ? CHC HEM 381 C 1 
HETATM 4 C CHD HEM . . . K 11 25.038 136.835 79.511 1 50.43 ? CHD HEM 381 C 1 
HETATM 5 C C1A HEM . . . K 11 20.264 136.38 77.35 1 49.04 ? C1A HEM 381 C 1 
HETATM 6 C C2A HEM . . . K 11 18.938 136.276 76.835 1 50.36 ? C2A HEM 381 C 1 
HETATM 7 C C3A HEM . . . K 11 18.629 134.997 77.01 1 50.21 ? C3A HEM 381 C 1 
HETATM 8 C C4A HEM . . . K 11 19.847 134.319 77.299 1 49.92 ? C4A HEM 381 C 1 
HETATM 9 C CMA HEM . . . K 11 17.265 134.373 76.805 1 52.43 ? CMA HEM 381 C 1 
HETATM 10 C CAA HEM . . . K 11 18.041 137.367 76.234 1 53.82 ? CAA HEM 381 C 1 
HETATM 11 C CBA HEM . . . K 11 18.312 137.934 74.833 1 56.95 ? CBA HEM 381 C 1 
HETATM 12 C CGA HEM . . . K 11 17.398 139.099 74.482 1 59.37 ? CGA HEM 381 C 1 
HETATM 13 O O1A HEM . . . K 11 17.569 140.204 75.041 1 60.26 ? O1A HEM 381 C 1 
HETATM 14 O O2A HEM . . . K 11 16.491 138.904 73.656 1 62.39 ? O2A HEM 381 C 1 
HETATM 15 C C1B HEM . . . K 11 21.083 132.331 77.722 1 49.67 ? C1B HEM 381 C 1 
HETATM 16 C C2B HEM . . . K 11 21.234 130.874 77.827 1 50.45 ? C2B HEM 381 C 1 
HETATM 17 C C3B HEM . . . K 11 22.578 130.702 78.117 1 50.81 ? C3B HEM 381 C 1 
HETATM 18 C C4B HEM . . . K 11 23.093 132.024 78.442 1 50.33 ? C4B HEM 381 C 1 
HETATM 19 C CMB HEM . . . K 11 20.194 129.759 77.693 1 43.95 ? CMB HEM 381 C 1 
HETATM 20 C CAB HEM . . . K 11 23.268 129.514 78.082 1 47.04 ? CAB HEM 381 C 1 
HETATM 21 C CBB HEM . . . K 11 23.075 128.631 79.084 1 46.89 ? CBB HEM 381 C 1 
HETATM 22 C C1C HEM . . . K 11 24.894 133.457 79.17 1 51.98 ? C1C HEM 381 C 1 
HETATM 23 C C2C HEM . . . K 11 26.14 133.593 79.903 1 52.54 ? C2C HEM 381 C 1 
HETATM 24 C C3C HEM . . . K 11 26.461 134.919 79.836 1 52.4 ? C3C HEM 381 C 1 
HETATM 25 C C4C HEM . . . K 11 25.235 135.528 79.376 1 49.47 ? C4C HEM 381 C 1 
HETATM 26 C CMC HEM . . . K 11 26.894 132.492 80.643 1 49.14 ? CMC HEM 381 C 1 
HETATM 27 C CAC HEM . . . K 11 27.69 135.536 80.141 1 52.46 ? CAC HEM 381 C 1 
HETATM 28 C CBC HEM . . . K 11 28.45 135.233 81.267 1 54.72 ? CBC HEM 381 C 1 
HETATM 29 C C1D HEM . . . K 11 23.919 137.441 79.093 1 52.45 ? C1D HEM 381 C 1 
HETATM 30 C C2D HEM . . . K 11 23.801 138.881 79.018 1 53 ? C2D HEM 381 C 1 
HETATM 31 C C3D HEM . . . K 11 22.593 139.088 78.455 1 53.33 ? C3D HEM 381 C 1 
HETATM 32 C C4D HEM . . . K 11 22.008 137.786 78.187 1 52.5 ? C4D HEM 381 C 1 
HETATM 33 C CMD HEM . . . K 11 24.782 139.956 79.446 1 52 ? CMD HEM 381 C 1 
HETATM 34 C CAD HEM . . . K 11 22.125 140.501 78.272 1 55.83 ? CAD HEM 381 C 1 
HETATM 35 C CBD HEM . . . K 11 22.393 141.063 76.894 1 57.28 ? CBD HEM 381 C 1 
HETATM 36 C CGD HEM . . . K 11 21.279 140.776 75.931 1 56.33 ? CGD HEM 381 C 1 
HETATM 37 O O1D HEM . . . K 11 21.445 141.059 74.736 1 59.91 ? O1D HEM 381 C 1 
HETATM 38 O O2D HEM . . . K 11 20.229 140.28 76.362 1 55.12 ? O2D HEM 381 C 1 
HETATM 39 N NA HEM . . . K 11 20.857 135.189 77.619 1 47.88 ? NA HEM 381 C 1 
HETATM 40 N NB HEM . . . K 11 22.217 133.049 78.154 1 48.1 ? NB HEM 381 C 1 
HETATM 41 N NC HEM . . . K 11 24.288 134.65 78.873 1 49.39 ? NC HEM 381 C 1 
HETATM 42 N ND HEM . . . K 11 22.835 136.736 78.546 1 51.42 ? ND HEM 381 C 1 
HETATM 43 FE FE HEM . . . K 11 22.54 134.833 78.263 1 45.08 ? FE HEM 381 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    30 
_model_server_stats.query_time_ms           328 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#