data_1BCC # _model_server_result.job_id bTGQ-Avf4KwCBsvJoPaIrA _model_server_result.datetime_utc '2024-10-19 01:40:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":381}' # _entry.id 1BCC # _exptl.entry_id 1BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 11 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCC _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 11 K N N ? 11 L N N ? 11 P N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # _atom_sites.entry_id 1BCC _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 BOG D 1 242 8 BOG BOG . P 11 HEM D 1 243 3 HEM HEM . Q 15 FES E 1 197 4 FES FES . R 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . K 11 20.82 137.571 77.614 1 51.48 ? CHA HEM 381 C 1 HETATM 2 C CHB HEM . . . K 11 19.948 132.956 77.322 1 49.23 ? CHB HEM 381 C 1 HETATM 3 C CHC HEM . . . K 11 24.321 132.244 78.934 1 52.46 ? CHC HEM 381 C 1 HETATM 4 C CHD HEM . . . K 11 25.038 136.835 79.511 1 50.43 ? CHD HEM 381 C 1 HETATM 5 C C1A HEM . . . K 11 20.264 136.38 77.35 1 49.04 ? C1A HEM 381 C 1 HETATM 6 C C2A HEM . . . K 11 18.938 136.276 76.835 1 50.36 ? C2A HEM 381 C 1 HETATM 7 C C3A HEM . . . K 11 18.629 134.997 77.01 1 50.21 ? C3A HEM 381 C 1 HETATM 8 C C4A HEM . . . K 11 19.847 134.319 77.299 1 49.92 ? C4A HEM 381 C 1 HETATM 9 C CMA HEM . . . K 11 17.265 134.373 76.805 1 52.43 ? CMA HEM 381 C 1 HETATM 10 C CAA HEM . . . K 11 18.041 137.367 76.234 1 53.82 ? CAA HEM 381 C 1 HETATM 11 C CBA HEM . . . K 11 18.312 137.934 74.833 1 56.95 ? CBA HEM 381 C 1 HETATM 12 C CGA HEM . . . K 11 17.398 139.099 74.482 1 59.37 ? CGA HEM 381 C 1 HETATM 13 O O1A HEM . . . K 11 17.569 140.204 75.041 1 60.26 ? O1A HEM 381 C 1 HETATM 14 O O2A HEM . . . K 11 16.491 138.904 73.656 1 62.39 ? O2A HEM 381 C 1 HETATM 15 C C1B HEM . . . K 11 21.083 132.331 77.722 1 49.67 ? C1B HEM 381 C 1 HETATM 16 C C2B HEM . . . K 11 21.234 130.874 77.827 1 50.45 ? C2B HEM 381 C 1 HETATM 17 C C3B HEM . . . K 11 22.578 130.702 78.117 1 50.81 ? C3B HEM 381 C 1 HETATM 18 C C4B HEM . . . K 11 23.093 132.024 78.442 1 50.33 ? C4B HEM 381 C 1 HETATM 19 C CMB HEM . . . K 11 20.194 129.759 77.693 1 43.95 ? CMB HEM 381 C 1 HETATM 20 C CAB HEM . . . K 11 23.268 129.514 78.082 1 47.04 ? CAB HEM 381 C 1 HETATM 21 C CBB HEM . . . K 11 23.075 128.631 79.084 1 46.89 ? CBB HEM 381 C 1 HETATM 22 C C1C HEM . . . K 11 24.894 133.457 79.17 1 51.98 ? C1C HEM 381 C 1 HETATM 23 C C2C HEM . . . K 11 26.14 133.593 79.903 1 52.54 ? C2C HEM 381 C 1 HETATM 24 C C3C HEM . . . K 11 26.461 134.919 79.836 1 52.4 ? C3C HEM 381 C 1 HETATM 25 C C4C HEM . . . K 11 25.235 135.528 79.376 1 49.47 ? C4C HEM 381 C 1 HETATM 26 C CMC HEM . . . K 11 26.894 132.492 80.643 1 49.14 ? CMC HEM 381 C 1 HETATM 27 C CAC HEM . . . K 11 27.69 135.536 80.141 1 52.46 ? CAC HEM 381 C 1 HETATM 28 C CBC HEM . . . K 11 28.45 135.233 81.267 1 54.72 ? CBC HEM 381 C 1 HETATM 29 C C1D HEM . . . K 11 23.919 137.441 79.093 1 52.45 ? C1D HEM 381 C 1 HETATM 30 C C2D HEM . . . K 11 23.801 138.881 79.018 1 53 ? C2D HEM 381 C 1 HETATM 31 C C3D HEM . . . K 11 22.593 139.088 78.455 1 53.33 ? C3D HEM 381 C 1 HETATM 32 C C4D HEM . . . K 11 22.008 137.786 78.187 1 52.5 ? C4D HEM 381 C 1 HETATM 33 C CMD HEM . . . K 11 24.782 139.956 79.446 1 52 ? CMD HEM 381 C 1 HETATM 34 C CAD HEM . . . K 11 22.125 140.501 78.272 1 55.83 ? CAD HEM 381 C 1 HETATM 35 C CBD HEM . . . K 11 22.393 141.063 76.894 1 57.28 ? CBD HEM 381 C 1 HETATM 36 C CGD HEM . . . K 11 21.279 140.776 75.931 1 56.33 ? CGD HEM 381 C 1 HETATM 37 O O1D HEM . . . K 11 21.445 141.059 74.736 1 59.91 ? O1D HEM 381 C 1 HETATM 38 O O2D HEM . . . K 11 20.229 140.28 76.362 1 55.12 ? O2D HEM 381 C 1 HETATM 39 N NA HEM . . . K 11 20.857 135.189 77.619 1 47.88 ? NA HEM 381 C 1 HETATM 40 N NB HEM . . . K 11 22.217 133.049 78.154 1 48.1 ? NB HEM 381 C 1 HETATM 41 N NC HEM . . . K 11 24.288 134.65 78.873 1 49.39 ? NC HEM 381 C 1 HETATM 42 N ND HEM . . . K 11 22.835 136.736 78.546 1 51.42 ? ND HEM 381 C 1 HETATM 43 FE FE HEM . . . K 11 22.54 134.833 78.263 1 45.08 ? FE HEM 381 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 354 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #