data_1BCC # _model_server_result.job_id 7_terGgKKAAWtnAze_wNpQ _model_server_result.datetime_utc '2025-02-17 18:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":383}' # _entry.id 1BCC # _exptl.entry_id 1BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCC _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # _atom_sites.entry_id 1BCC _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 BOG D 1 242 8 BOG BOG . P 11 HEM D 1 243 3 HEM HEM . Q 15 FES E 1 197 4 FES FES . R 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . M 12 29.685 111.475 73.613 0.79 79.58 ? C1 U10 383 C 1 HETATM 2 C C2 U10 . . . M 12 29.085 110.181 73.796 0.79 81.5 ? C2 U10 383 C 1 HETATM 3 C C3 U10 . . . M 12 28.206 109.627 72.845 0.79 83.07 ? C3 U10 383 C 1 HETATM 4 C C4 U10 . . . M 12 27.886 110.361 71.678 0.79 81.57 ? C4 U10 383 C 1 HETATM 5 C C5 U10 . . . M 12 28.456 111.66 71.454 0.79 80.31 ? C5 U10 383 C 1 HETATM 6 C C6 U10 . . . M 12 29.375 112.281 72.406 0.79 79.85 ? C6 U10 383 C 1 HETATM 7 C C1M U10 . . . M 12 30.63 111.957 74.705 0.79 77.85 ? C1M U10 383 C 1 HETATM 8 C C3M U10 . . . M 12 28.425 107.164 72.862 0.79 85.53 ? C3M U10 383 C 1 HETATM 9 C C4M U10 . . . M 12 27.47 108.873 69.804 0.79 79.12 ? C4M U10 383 C 1 HETATM 10 C C7 U10 . . . M 12 29.99 113.725 72.096 0.79 80.58 ? C7 U10 383 C 1 HETATM 11 C C8 U10 . . . M 12 30.2 114.63 73.236 0.79 80.6 ? C8 U10 383 C 1 HETATM 12 C C9 U10 . . . M 12 30.734 115.906 73.281 0.79 82.51 ? C9 U10 383 C 1 HETATM 13 C C10 U10 . . . M 12 30.802 116.492 74.679 0.79 85.33 ? C10 U10 383 C 1 HETATM 14 C C11 U10 . . . M 12 31.22 116.74 72.083 0.79 84.23 ? C11 U10 383 C 1 HETATM 15 C C12 U10 . . . M 12 31.035 118.273 72.277 0.79 88.44 ? C12 U10 383 C 1 HETATM 16 C C13 U10 . . . M 12 31.98 119.034 71.474 0.79 93.46 ? C13 U10 383 C 1 HETATM 17 C C14 U10 . . . M 12 33.06 119.773 71.968 0.79 96.85 ? C14 U10 383 C 1 HETATM 18 C C15 U10 . . . M 12 33.915 120.494 70.931 0.79 97.68 ? C15 U10 383 C 1 HETATM 19 C C16 U10 . . . M 12 33.413 119.886 73.475 0.79 98.05 ? C16 U10 383 C 1 HETATM 20 C C17 U10 . . . M 12 34.556 118.982 73.982 0.79 98.92 ? C17 U10 383 C 1 HETATM 21 C C18 U10 . . . M 12 35.622 119.825 74.531 0.79 100 ? C18 U10 383 C 1 HETATM 22 C C19 U10 . . . M 12 36.838 119.418 75.116 0.79 100 ? C19 U10 383 C 1 HETATM 23 C C20 U10 . . . M 12 37.786 120.502 75.616 0.79 100 ? C20 U10 383 C 1 HETATM 24 C C21 U10 . . . M 12 37.26 117.966 75.281 0.79 100 ? C21 U10 383 C 1 HETATM 25 C C22 U10 . . . M 12 38.425 117.544 74.399 0.79 99.27 ? C22 U10 383 C 1 HETATM 26 O O2 U10 . . . M 12 29.317 109.488 74.782 0.79 83.51 ? O2 U10 383 C 1 HETATM 27 O O3 U10 . . . M 12 27.648 108.357 73.062 0.79 86.3 ? O3 U10 383 C 1 HETATM 28 O O4 U10 . . . M 12 27.012 109.809 70.735 0.79 82.28 ? O4 U10 383 C 1 HETATM 29 O O5 U10 . . . M 12 28.122 112.234 70.404 0.79 77.87 ? O5 U10 383 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #