data_1BCC # _model_server_result.job_id KrUCVY9o10Gvx4eXLS7z7A _model_server_result.datetime_utc '2025-06-20 08:43:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":383}' # _entry.id 1BCC # _exptl.entry_id 1BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 863.343 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description UBIQUINONE-10 _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCC _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 # _struct_asym.details ? _struct_asym.entity_id 12 _struct_asym.id M _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? # _chem_comp.formula 'C59 H90 O4' _chem_comp.formula_weight 863.343 _chem_comp.id U10 _chem_comp.mon_nstd_flag . _chem_comp.name UBIQUINONE-10 _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Coenzyme Q10' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 U10 sing 618 n n C1 C6 U10 doub 619 n n C1 C1M U10 sing 620 n n C2 C3 U10 sing 621 n n C2 O2 U10 doub 622 n n C3 C4 U10 doub 623 n n C3 O3 U10 sing 624 n n C4 C5 U10 sing 625 n n C4 O4 U10 sing 626 n n C5 C6 U10 sing 627 n n C5 O5 U10 doub 628 n n C6 C7 U10 sing 629 n n C1M H1M1 U10 sing 630 n n C1M H1M2 U10 sing 631 n n C1M H1M3 U10 sing 632 n n C3M O3 U10 sing 633 n n C3M H3M1 U10 sing 634 n n C3M H3M2 U10 sing 635 n n C3M H3M3 U10 sing 636 n n C4M O4 U10 sing 637 n n C4M H4M1 U10 sing 638 n n C4M H4M2 U10 sing 639 n n C4M H4M3 U10 sing 640 n n C7 C8 U10 sing 641 n n C7 H71 U10 sing 642 n n C7 H72 U10 sing 643 n n C8 C9 U10 doub 644 e n C8 H8 U10 sing 645 n n C9 C10 U10 sing 646 n n C9 C11 U10 sing 647 n n C10 H101 U10 sing 648 n n C10 H102 U10 sing 649 n n C10 H103 U10 sing 650 n n C11 C12 U10 sing 651 n n C11 H111 U10 sing 652 n n C11 H112 U10 sing 653 n n C12 C13 U10 sing 654 n n C12 H121 U10 sing 655 n n C12 H122 U10 sing 656 n n C13 C14 U10 doub 657 e n C13 H13 U10 sing 658 n n C14 C15 U10 sing 659 n n C14 C16 U10 sing 660 n n C15 H151 U10 sing 661 n n C15 H152 U10 sing 662 n n C15 H153 U10 sing 663 n n C16 C17 U10 sing 664 n n C16 H161 U10 sing 665 n n C16 H162 U10 sing 666 n n C17 C18 U10 sing 667 n n C17 H171 U10 sing 668 n n C17 H172 U10 sing 669 n n C18 C19 U10 doub 670 e n C18 H18 U10 sing 671 n n C19 C20 U10 sing 672 n n C19 C21 U10 sing 673 n n C20 H201 U10 sing 674 n n C20 H202 U10 sing 675 n n C20 H203 U10 sing 676 n n C21 C22 U10 sing 677 n n C21 H211 U10 sing 678 n n C21 H212 U10 sing 679 n n C22 C23 U10 sing 680 n n C22 H221 U10 sing 681 n n C22 H222 U10 sing 682 n n C23 C24 U10 doub 683 e n C23 H23 U10 sing 684 n n C24 C25 U10 sing 685 n n C24 C26 U10 sing 686 n n C25 H251 U10 sing 687 n n C25 H252 U10 sing 688 n n C25 H253 U10 sing 689 n n C26 C27 U10 sing 690 n n C26 H261 U10 sing 691 n n C26 H262 U10 sing 692 n n C27 C28 U10 sing 693 n n C27 H271 U10 sing 694 n n C27 H272 U10 sing 695 n n C28 C29 U10 doub 696 e n C28 H28 U10 sing 697 n n C29 C30 U10 sing 698 n n C29 C31 U10 sing 699 n n C30 H301 U10 sing 700 n n C30 H302 U10 sing 701 n n C30 H303 U10 sing 702 n n C31 C32 U10 sing 703 n n C31 H311 U10 sing 704 n n C31 H312 U10 sing 705 n n C32 C33 U10 sing 706 n n C32 H321 U10 sing 707 n n C32 H322 U10 sing 708 n n C33 C34 U10 doub 709 e n C33 H33 U10 sing 710 n n C34 C35 U10 sing 711 n n C34 C36 U10 sing 712 n n C35 H351 U10 sing 713 n n C35 H352 U10 sing 714 n n C35 H353 U10 sing 715 n n C36 C37 U10 sing 716 n n C36 H361 U10 sing 717 n n C36 H362 U10 sing 718 n n C37 C38 U10 sing 719 n n C37 H371 U10 sing 720 n n C37 H372 U10 sing 721 n n C38 C39 U10 doub 722 e n C38 H38 U10 sing 723 n n C39 C40 U10 sing 724 n n C39 C41 U10 sing 725 n n C40 H401 U10 sing 726 n n C40 H402 U10 sing 727 n n C40 H403 U10 sing 728 n n C41 C42 U10 sing 729 n n C41 H411 U10 sing 730 n n C41 H412 U10 sing 731 n n C42 C43 U10 sing 732 n n C42 H421 U10 sing 733 n n C42 H422 U10 sing 734 n n C43 C44 U10 doub 735 e n C43 H43 U10 sing 736 n n C44 C45 U10 sing 737 n n C44 C46 U10 sing 738 n n C45 H451 U10 sing 739 n n C45 H452 U10 sing 740 n n C45 H453 U10 sing 741 n n C46 C47 U10 sing 742 n n C46 H461 U10 sing 743 n n C46 H462 U10 sing 744 n n C47 C48 U10 sing 745 n n C47 H471 U10 sing 746 n n C47 H472 U10 sing 747 n n C48 C49 U10 doub 748 e n C48 H48 U10 sing 749 n n C49 C50 U10 sing 750 n n C49 C51 U10 sing 751 n n C50 H501 U10 sing 752 n n C50 H502 U10 sing 753 n n C50 H503 U10 sing 754 n n C51 C52 U10 sing 755 n n C51 H511 U10 sing 756 n n C51 H512 U10 sing 757 n n C52 C53 U10 sing 758 n n C52 H521 U10 sing 759 n n C52 H522 U10 sing 760 n n C53 C54 U10 doub 761 n n C53 H53 U10 sing 762 n n C54 C55 U10 sing 763 n n C54 C56 U10 sing 764 n n C55 H551 U10 sing 765 n n C55 H552 U10 sing 766 n n C55 H553 U10 sing 767 n n C56 H561 U10 sing 768 n n C56 H562 U10 sing 769 n n C56 H563 U10 sing 770 n n # _atom_sites.entry_id 1BCC _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 BOG D 1 242 8 BOG BOG . P 11 HEM D 1 243 3 HEM HEM . Q 15 FES E 1 197 4 FES FES . R 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 U10 . . . M 12 29.685 111.475 73.613 0.79 79.58 ? C1 U10 383 C 1 HETATM 2 C C2 U10 . . . M 12 29.085 110.181 73.796 0.79 81.5 ? C2 U10 383 C 1 HETATM 3 C C3 U10 . . . M 12 28.206 109.627 72.845 0.79 83.07 ? C3 U10 383 C 1 HETATM 4 C C4 U10 . . . M 12 27.886 110.361 71.678 0.79 81.57 ? C4 U10 383 C 1 HETATM 5 C C5 U10 . . . M 12 28.456 111.66 71.454 0.79 80.31 ? C5 U10 383 C 1 HETATM 6 C C6 U10 . . . M 12 29.375 112.281 72.406 0.79 79.85 ? C6 U10 383 C 1 HETATM 7 C C1M U10 . . . M 12 30.63 111.957 74.705 0.79 77.85 ? C1M U10 383 C 1 HETATM 8 C C3M U10 . . . M 12 28.425 107.164 72.862 0.79 85.53 ? C3M U10 383 C 1 HETATM 9 C C4M U10 . . . M 12 27.47 108.873 69.804 0.79 79.12 ? C4M U10 383 C 1 HETATM 10 C C7 U10 . . . M 12 29.99 113.725 72.096 0.79 80.58 ? C7 U10 383 C 1 HETATM 11 C C8 U10 . . . M 12 30.2 114.63 73.236 0.79 80.6 ? C8 U10 383 C 1 HETATM 12 C C9 U10 . . . M 12 30.734 115.906 73.281 0.79 82.51 ? C9 U10 383 C 1 HETATM 13 C C10 U10 . . . M 12 30.802 116.492 74.679 0.79 85.33 ? C10 U10 383 C 1 HETATM 14 C C11 U10 . . . M 12 31.22 116.74 72.083 0.79 84.23 ? C11 U10 383 C 1 HETATM 15 C C12 U10 . . . M 12 31.035 118.273 72.277 0.79 88.44 ? C12 U10 383 C 1 HETATM 16 C C13 U10 . . . M 12 31.98 119.034 71.474 0.79 93.46 ? C13 U10 383 C 1 HETATM 17 C C14 U10 . . . M 12 33.06 119.773 71.968 0.79 96.85 ? C14 U10 383 C 1 HETATM 18 C C15 U10 . . . M 12 33.915 120.494 70.931 0.79 97.68 ? C15 U10 383 C 1 HETATM 19 C C16 U10 . . . M 12 33.413 119.886 73.475 0.79 98.05 ? C16 U10 383 C 1 HETATM 20 C C17 U10 . . . M 12 34.556 118.982 73.982 0.79 98.92 ? C17 U10 383 C 1 HETATM 21 C C18 U10 . . . M 12 35.622 119.825 74.531 0.79 100 ? C18 U10 383 C 1 HETATM 22 C C19 U10 . . . M 12 36.838 119.418 75.116 0.79 100 ? C19 U10 383 C 1 HETATM 23 C C20 U10 . . . M 12 37.786 120.502 75.616 0.79 100 ? C20 U10 383 C 1 HETATM 24 C C21 U10 . . . M 12 37.26 117.966 75.281 0.79 100 ? C21 U10 383 C 1 HETATM 25 C C22 U10 . . . M 12 38.425 117.544 74.399 0.79 99.27 ? C22 U10 383 C 1 HETATM 26 O O2 U10 . . . M 12 29.317 109.488 74.782 0.79 83.51 ? O2 U10 383 C 1 HETATM 27 O O3 U10 . . . M 12 27.648 108.357 73.062 0.79 86.3 ? O3 U10 383 C 1 HETATM 28 O O4 U10 . . . M 12 27.012 109.809 70.735 0.79 82.28 ? O4 U10 383 C 1 HETATM 29 O O5 U10 . . . M 12 28.122 112.234 70.404 0.79 77.87 ? O5 U10 383 C 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 29 #