data_1BCC # _model_server_result.job_id J8-a_SmcABGe6vRcgV-GCw _model_server_result.datetime_utc '2024-11-24 10:47:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":384}' # _entry.id 1BCC # _exptl.entry_id 1BCC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 749.073 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCC _cell.length_a 169.59 _cell.length_b 182.518 _cell.length_c 240.573 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCC _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 20-MERIC _pdbx_struct_assembly.oligomeric_count 20 _pdbx_struct_assembly.details 'complete point assembly' _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression (1-2) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' ? ? 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? -0.835029 -0.550204 -0.001423 -0.550192 0.834987 0.009204 -0.003876 0.008468 -0.999957 128.9528 37.82 171.594 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 N N N ? 13 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 P CAB HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.798 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 P CAC HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 ? metalc ? metalc1 C NE2 HIS 84 C HIS 84 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc2 C NE2 HIS 98 C HIS 98 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? metalc ? metalc3 C NE2 HIS 183 C HIS 183 1_555 K FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc4 C NE2 HIS 197 C HIS 197 1_555 L FE HEM . C HEM 382 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.996 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 P FE HEM . D HEM 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.912 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 Q FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.896 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc11 E N HIS 161 E HIS 161 1_555 Q FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.072 ? # _chem_comp.formula 'C41 H83 N O8 P 1' _chem_comp.formula_weight 749.073 _chem_comp.id PEE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms DOPE # _atom_sites.entry_id 1BCC _atom_sites.fract_transf_matrix[1][1] 0.005897 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005479 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004157 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code K 11 HEM C 1 381 1 HEM HEM . L 11 HEM C 1 382 2 HEM HEM . M 12 U10 C 1 383 5 U10 U10 . N 13 PEE C 1 384 7 PEE PEE . O 14 BOG D 1 242 8 BOG BOG . P 11 HEM D 1 243 3 HEM HEM . Q 15 FES E 1 197 4 FES FES . R 13 PEE E 1 198 6 PEE PEE . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 PEE . . . N 13 11.133 108.34 63.436 0.72 33.02 ? C2 PEE 384 C 1 HETATM 2 C C1 PEE . . . N 13 11.548 106.976 62.689 0.72 36.9 ? C1 PEE 384 C 1 HETATM 3 N N PEE . . . N 13 15.293 103.058 60.387 0.72 54.47 ? N PEE 384 C 1 HETATM 4 C C3 PEE . . . N 13 9.878 108.872 62.715 0.72 36.3 ? C3 PEE 384 C 1 HETATM 5 C C4 PEE . . . N 13 13.283 102.543 61.964 0.72 52.56 ? C4 PEE 384 C 1 HETATM 6 C C5 PEE . . . N 13 14.817 102.833 61.756 0.72 54.75 ? C5 PEE 384 C 1 HETATM 7 C C10 PEE . . . N 13 11.485 109.895 65.306 0.55 20.96 ? C10 PEE 384 C 1 HETATM 8 C C11 PEE . . . N 13 12.232 110.484 66.614 0.55 22.12 ? C11 PEE 384 C 1 HETATM 9 C C12 PEE . . . N 13 11.246 111.705 66.692 0.72 20.89 ? C12 PEE 384 C 1 HETATM 10 C C13 PEE . . . N 13 11.549 112.666 67.837 0.72 21.69 ? C13 PEE 384 C 1 HETATM 11 C C14 PEE . . . N 13 10.332 113.595 67.702 0.72 27.59 ? C14 PEE 384 C 1 HETATM 12 C C15 PEE . . . N 13 10.643 115.1 67.851 0.72 28.97 ? C15 PEE 384 C 1 HETATM 13 C C16 PEE . . . N 13 9.63 115.582 68.946 0.72 33.51 ? C16 PEE 384 C 1 HETATM 14 C C17 PEE . . . N 13 10.145 116.673 69.983 0.72 38.53 ? C17 PEE 384 C 1 HETATM 15 C C18 PEE . . . N 13 9.04 117.077 71.06 0.72 38.01 ? C18 PEE 384 C 1 HETATM 16 C C19 PEE . . . N 13 8.632 116.047 72.212 0.72 37 ? C19 PEE 384 C 1 HETATM 17 C C20 PEE . . . N 13 9.262 116.183 73.651 0.72 37.86 ? C20 PEE 384 C 1 HETATM 18 C C21 PEE . . . N 13 8.263 115.548 74.692 0.72 37.53 ? C21 PEE 384 C 1 HETATM 19 C C22 PEE . . . N 13 8.476 115.187 75.966 0.72 36.31 ? C22 PEE 384 C 1 HETATM 20 C C23 PEE . . . N 13 7.574 115.85 77.091 0.72 39.37 ? C23 PEE 384 C 1 HETATM 21 C C24 PEE . . . N 13 7.682 117.416 77.497 0.72 41.77 ? C24 PEE 384 C 1 HETATM 22 C C25 PEE . . . N 13 8.692 118.427 76.801 0.72 38.88 ? C25 PEE 384 C 1 HETATM 23 C C26 PEE . . . N 13 9.368 119.25 77.946 0.72 34.1 ? C26 PEE 384 C 1 HETATM 24 C C30 PEE . . . N 13 9.719 110.33 60.988 0.72 41.76 ? C30 PEE 384 C 1 HETATM 25 C C31 PEE . . . N 13 10.325 111.582 60.701 0.72 41 ? C31 PEE 384 C 1 HETATM 26 C C32 PEE . . . N 13 9.983 112.702 61.715 0.72 39.6 ? C32 PEE 384 C 1 HETATM 27 C C33 PEE . . . N 13 10.335 114.168 61.508 0.72 39.72 ? C33 PEE 384 C 1 HETATM 28 C C34 PEE . . . N 13 9.859 114.75 62.854 0.72 44.61 ? C34 PEE 384 C 1 HETATM 29 C C35 PEE . . . N 13 10.088 116.288 62.962 0.72 47.46 ? C35 PEE 384 C 1 HETATM 30 C C36 PEE . . . N 13 9.211 116.789 64.168 0.72 45.65 ? C36 PEE 384 C 1 HETATM 31 C C37 PEE . . . N 13 9.126 118.354 64.318 0.72 47.8 ? C37 PEE 384 C 1 HETATM 32 C C38 PEE . . . N 13 8.493 118.8 65.693 0.72 50.07 ? C38 PEE 384 C 1 HETATM 33 C C39 PEE . . . N 13 8.475 120.345 66.096 0.72 51.65 ? C39 PEE 384 C 1 HETATM 34 C C40 PEE . . . N 13 9.454 120.902 67.218 0.72 55.61 ? C40 PEE 384 C 1 HETATM 35 C C41 PEE . . . N 13 8.613 121.826 68.17 0.72 54.25 ? C41 PEE 384 C 1 HETATM 36 C C42 PEE . . . N 13 8.69 122.007 69.5 0.72 51.71 ? C42 PEE 384 C 1 HETATM 37 C C43 PEE . . . N 13 7.312 122.094 70.285 0.72 46.21 ? C43 PEE 384 C 1 HETATM 38 C C44 PEE . . . N 13 7.208 121.493 71.754 0.72 40.78 ? C44 PEE 384 C 1 HETATM 39 C C45 PEE . . . N 13 7.798 122.275 72.983 0.72 34.61 ? C45 PEE 384 C 1 HETATM 40 C C46 PEE . . . N 13 7.524 121.387 74.238 0.72 31.65 ? C46 PEE 384 C 1 HETATM 41 O O4 PEE . . . N 13 11.361 109.552 66.502 0.55 20.1 ? O4 PEE 384 C 1 HETATM 42 O O5 PEE . . . N 13 8.168 110.346 60.896 0.72 44.21 ? O5 PEE 384 C 1 HETATM 43 O O2 PEE . . . N 13 11.915 108.725 64.539 0.55 23.9 ? O2 PEE 384 C 1 HETATM 44 O O3 PEE . . . N 13 9.802 109.037 61.273 0.72 39.38 ? O3 PEE 384 C 1 HETATM 45 O O1P PEE . . . N 13 13.005 104.475 64.311 0.72 46.89 ? O1P PEE 384 C 1 HETATM 46 O O2P PEE . . . N 13 10.909 103.237 63.719 0.72 48.82 ? O2P PEE 384 C 1 HETATM 47 O O3P PEE . . . N 13 10.93 105.7 63.079 0.72 43.62 ? O3P PEE 384 C 1 HETATM 48 O O4P PEE . . . N 13 12.652 103.842 61.963 0.72 51.03 ? O4P PEE 384 C 1 HETATM 49 P P PEE . . . N 13 11.887 104.317 63.323 0.72 48.87 ? P PEE 384 C 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 49 #