data_1BCP
#
_model_server_result.job_id            Ddb0SfJaU6mcqpDZ2A8RYw 
_model_server_result.datetime_utc      '2024-11-08 03:39:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bcp 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":111}' 
#
_entry.id    1BCP 
#
_exptl.entry_id    1BCP 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1BCP 
_cell.length_a            163.8 
_cell.length_b            98.2 
_cell.length_c            194.5 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BCP 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA hexameric 6 author_and_software_defined_assembly 1 
PISA hexameric 6 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,M,O,P,Q,R 1 1 
G,H,I,J,K,L,N,S,T,U,V,W,X 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 M N N 
? 6 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 41 A CYS 41 1_555 A SG CYS 201 A CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? 
disulf ? disulf2 B SG CYS 23 B CYS 23 1_555 B SG CYS 87 B CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
disulf ? disulf3 B SG CYS 120 B CYS 120 1_555 B SG CYS 134 B CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
disulf ? disulf4 B SG CYS 192 B CYS 192 1_555 B SG CYS 199 B CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf5 C SG CYS 23 C CYS 23 1_555 C SG CYS 87 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf6 C SG CYS 120 C CYS 120 1_555 C SG CYS 134 C CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf7 C SG CYS 192 C CYS 192 1_555 C SG CYS 199 C CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf8 D SG CYS 31 D CYS 31 1_555 D SG CYS 51 D CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf9 D SG CYS 103 D CYS 103 1_555 D SG CYS 109 D CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? 
disulf ? disulf10 E SG CYS 31 E CYS 31 1_555 E SG CYS 51 E CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf11 E SG CYS 103 E CYS 103 1_555 E SG CYS 109 E CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? 
disulf ? disulf12 F SG CYS 27 F CYS 27 1_555 F SG CYS 41 F CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? 
disulf ? disulf13 F SG CYS 92 F CYS 92 1_555 F SG CYS 98 F CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? 
disulf ? disulf14 G SG CYS 41 G CYS 41 1_555 G SG CYS 201 G CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.017 ? 
disulf ? disulf15 H SG CYS 23 H CYS 23 1_555 H SG CYS 87 H CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf16 H SG CYS 120 H CYS 120 1_555 H SG CYS 134 H CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? 
disulf ? disulf17 H SG CYS 192 H CYS 192 1_555 H SG CYS 199 H CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
disulf ? disulf18 I SG CYS 23 I CYS 23 1_555 I SG CYS 87 I CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf19 I SG CYS 120 I CYS 120 1_555 I SG CYS 134 I CYS 134 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.009 ? 
disulf ? disulf20 I SG CYS 192 I CYS 192 1_555 I SG CYS 199 I CYS 199 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf21 J SG CYS 31 J CYS 31 1_555 J SG CYS 51 J CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf22 J SG CYS 103 J CYS 103 1_555 J SG CYS 109 J CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
disulf ? disulf23 K SG CYS 31 K CYS 31 1_555 K SG CYS 51 K CYS 51 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf24 K SG CYS 103 K CYS 103 1_555 K SG CYS 109 K CYS 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf25 L SG CYS 27 L CYS 27 1_555 L SG CYS 41 L CYS 41 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf26 L SG CYS 92 L CYS 92 1_555 L SG CYS 98 L CYS 98 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     1BCP 
_atom_sites.fract_transf_matrix[1][1]    0.006105 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010183 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005141 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
M 6 ATP E 1 111 1 ATP ATP . 
N 6 ATP K 1 111 2 ATP ATP . 
O 7 HOH A 1 236 3 HOH HOH . 
O 7 HOH A 2 237 4 HOH HOH . 
O 7 HOH A 3 238 6 HOH HOH . 
O 7 HOH A 4 239 15 HOH HOH . 
O 7 HOH A 5 240 18 HOH HOH . 
O 7 HOH A 6 241 19 HOH HOH . 
O 7 HOH A 7 242 20 HOH HOH . 
O 7 HOH A 8 243 21 HOH HOH . 
O 7 HOH A 9 244 22 HOH HOH . 
O 7 HOH A 10 245 24 HOH HOH . 
P 7 HOH B 1 200 16 HOH HOH . 
P 7 HOH B 2 201 17 HOH HOH . 
P 7 HOH B 3 202 23 HOH HOH . 
P 7 HOH B 4 203 27 HOH HOH . 
Q 7 HOH C 1 200 5 HOH HOH . 
Q 7 HOH C 2 201 7 HOH HOH . 
Q 7 HOH C 3 202 8 HOH HOH . 
Q 7 HOH C 4 203 9 HOH HOH . 
Q 7 HOH C 5 204 12 HOH HOH . 
Q 7 HOH C 6 205 25 HOH HOH . 
R 7 HOH E 1 112 10 HOH HOH . 
R 7 HOH E 2 113 11 HOH HOH . 
R 7 HOH E 3 114 13 HOH HOH . 
R 7 HOH E 4 115 14 HOH HOH . 
R 7 HOH E 5 116 26 HOH HOH . 
S 7 HOH G 1 236 41 HOH HOH . 
T 7 HOH H 1 200 28 HOH HOH . 
T 7 HOH H 2 201 29 HOH HOH . 
T 7 HOH H 3 202 36 HOH HOH . 
U 7 HOH I 1 200 33 HOH HOH . 
U 7 HOH I 2 201 37 HOH HOH . 
U 7 HOH I 3 202 38 HOH HOH . 
U 7 HOH I 4 203 40 HOH HOH . 
V 7 HOH J 1 111 32 HOH HOH . 
V 7 HOH J 2 112 34 HOH HOH . 
V 7 HOH J 3 113 35 HOH HOH . 
W 7 HOH K 1 112 31 HOH HOH . 
W 7 HOH K 2 113 39 HOH HOH . 
W 7 HOH K 3 114 42 HOH HOH . 
W 7 HOH K 4 115 43 HOH HOH . 
X 7 HOH L 1 100 30 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . M 6 -8.086 13.603 -8.725 1 24.22 ? PG ATP 111 E 1 
HETATM 2 O O1G ATP . . . M 6 -9.565 13.425 -8.788 1 22.13 ? O1G ATP 111 E 1 
HETATM 3 O O2G ATP . . . M 6 -7.334 12.401 -8.266 1 24.66 ? O2G ATP 111 E 1 
HETATM 4 O O3G ATP . . . M 6 -7.638 14.89 -8.144 1 24.02 ? O3G ATP 111 E 1 
HETATM 5 P PB ATP . . . M 6 -8.413 13.385 -11.599 1 22.99 ? PB ATP 111 E 1 
HETATM 6 O O1B ATP . . . M 6 -8.608 11.91 -11.63 1 22 ? O1B ATP 111 E 1 
HETATM 7 O O2B ATP . . . M 6 -7.732 14.073 -12.714 1 23.43 ? O2B ATP 111 E 1 
HETATM 8 O O3B ATP . . . M 6 -7.59 13.755 -10.26 1 25.17 ? O3B ATP 111 E 1 
HETATM 9 P PA ATP . . . M 6 -10.537 14.976 -12.535 1 18.67 ? PA ATP 111 E 1 
HETATM 10 O O1A ATP . . . M 6 -11.907 15.263 -12.085 1 22.56 ? O1A ATP 111 E 1 
HETATM 11 O O2A ATP . . . M 6 -9.641 16.101 -12.883 1 16.41 ? O2A ATP 111 E 1 
HETATM 12 O O3A ATP . . . M 6 -9.848 14.079 -11.403 1 20.67 ? O3A ATP 111 E 1 
HETATM 13 O O5' ATP . . . M 6 -10.665 13.992 -13.803 1 17.53 ? O5' ATP 111 E 1 
HETATM 14 C C5' ATP . . . M 6 -11.416 12.765 -13.808 1 15.73 ? C5' ATP 111 E 1 
HETATM 15 C C4' ATP . . . M 6 -11.279 11.825 -15.073 1 15.65 ? C4' ATP 111 E 1 
HETATM 16 O O4' ATP . . . M 6 -11.729 12.596 -16.2 1 14.31 ? O4' ATP 111 E 1 
HETATM 17 C C3' ATP . . . M 6 -9.944 11.312 -15.399 1 14.73 ? C3' ATP 111 E 1 
HETATM 18 O O3' ATP . . . M 6 -10.016 10.51 -16.573 1 15.76 ? O3' ATP 111 E 1 
HETATM 19 C C2' ATP . . . M 6 -9.41 12.933 -15.61 1 14.95 ? C2' ATP 111 E 1 
HETATM 20 O O2' ATP . . . M 6 -8.083 12.908 -16.167 1 14.49 ? O2' ATP 111 E 1 
HETATM 21 C C1' ATP . . . M 6 -10.412 12.87 -16.613 1 14.35 ? C1' ATP 111 E 1 
HETATM 22 N N9 ATP . . . M 6 -10.424 14.158 -17.318 1 14.84 ? N9 ATP 111 E 1 
HETATM 23 C C8 ATP . . . M 6 -10.827 15.349 -16.773 1 14.25 ? C8 ATP 111 E 1 
HETATM 24 N N7 ATP . . . M 6 -11.013 16.308 -17.629 1 13.83 ? N7 ATP 111 E 1 
HETATM 25 C C5 ATP . . . M 6 -10.712 15.726 -18.851 1 14.09 ? C5 ATP 111 E 1 
HETATM 26 C C6 ATP . . . M 6 -10.716 16.226 -20.155 1 12.16 ? C6 ATP 111 E 1 
HETATM 27 N N6 ATP . . . M 6 -10.895 17.515 -20.431 1 12.14 ? N6 ATP 111 E 1 
HETATM 28 N N1 ATP . . . M 6 -10.378 15.388 -21.126 1 11.65 ? N1 ATP 111 E 1 
HETATM 29 C C2 ATP . . . M 6 -10.058 14.139 -20.83 1 14.39 ? C2 ATP 111 E 1 
HETATM 30 N N3 ATP . . . M 6 -10.013 13.537 -19.655 1 16.81 ? N3 ATP 111 E 1 
HETATM 31 C C4 ATP . . . M 6 -10.365 14.41 -18.683 1 16.13 ? C4 ATP 111 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           227 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           31 
#