data_1BCR # _model_server_result.job_id 7CuP4c0SEFxlREqWwNedDw _model_server_result.datetime_utc '2024-12-26 19:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":426}' # _entry.id 1BCR # _exptl.entry_id 1BCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.209 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ARGININE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BCR _cell.length_a 98.4 _cell.length_b 98.4 _cell.length_c 209.5 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 98.4 98.4 104.75 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 4 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 4 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n D NAG 1 D 1 NAG A 1051 NAG 4 n D FUC 2 D 2 FUC A 105 FUC 4 n D NAG 3 D 3 NAG A 1052 NAG 5 n E NAG 1 E 1 NAG B 2911 NAG 5 n E NAG 2 E 2 NAG B 2912 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 56 1_555 B SG CYS 40 B CYS 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 222 A CYS 210 1_555 A SG CYS 234 A CYS 222 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? disulf ? disulf3 A SG CYS 258 A CYS 246 1_555 B SG CYS 7 B CYS 268 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.945 ? covale ? covale1 A ND2 ASN 116 A ASN 105 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale2 A ND2 ASN 127 A ASN 113 1_555 F C1 NAG . A NAG 1131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 A OG SER 158 A SER 146 1_555 C C OAR 4 C OAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.472 ? covale ? covale4 B ND2 ASN 28 B ASN 291 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale5 C C VAL 3 C VAL 3 1_555 C N OAR 4 C OAR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? covale ? covale6 D O3 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.387 ? covale ? covale7 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale8 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.398 ? # _chem_comp.formula 'C6 H15 N4 O2 1' _chem_comp.formula_weight 175.209 _chem_comp.id ARG _chem_comp.mon_nstd_flag y _chem_comp.name ARGININE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA ARG sing 13 n n N H ARG sing 14 n n N H2 ARG sing 15 n n CA C ARG sing 16 n n CA CB ARG sing 17 n n CA HA ARG sing 18 n n C O ARG doub 19 n n C OXT ARG sing 20 n n CB CG ARG sing 21 n n CB HB2 ARG sing 22 n n CB HB3 ARG sing 23 n n CG CD ARG sing 24 n n CG HG2 ARG sing 25 n n CG HG3 ARG sing 26 n n CD NE ARG sing 27 n n CD HD2 ARG sing 28 n n CD HD3 ARG sing 29 n n NE CZ ARG sing 30 n n NE HE ARG sing 31 n n CZ NH1 ARG sing 32 n n CZ NH2 ARG doub 33 n n NH1 HH11 ARG sing 34 n n NH1 HH12 ARG sing 35 n n NH2 HH21 ARG sing 36 n n NH2 HH22 ARG sing 37 n n OXT HXT ARG sing 38 n n # _atom_sites.entry_id 1BCR _atom_sites.fract_transf_matrix[1][1] 0.010163 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 NAG A 1 1131 1131 NAG NAG . G 7 ARG A 1 426 426 ARG ARG . H 8 HOH A 1 1135 1 HOH HOH . H 8 HOH A 2 1136 3 HOH HOH . H 8 HOH A 3 1137 4 HOH HOH . H 8 HOH A 4 1138 5 HOH HOH . H 8 HOH A 5 1139 6 HOH HOH . H 8 HOH A 6 1140 7 HOH HOH . H 8 HOH A 7 1141 8 HOH HOH . H 8 HOH A 8 1142 9 HOH HOH . H 8 HOH A 9 1143 13 HOH HOH . H 8 HOH A 10 1144 15 HOH HOH . H 8 HOH A 11 1145 18 HOH HOH . H 8 HOH A 12 1146 19 HOH HOH . H 8 HOH A 13 1147 20 HOH HOH . H 8 HOH A 14 1148 21 HOH HOH . H 8 HOH A 15 1149 23 HOH HOH . H 8 HOH A 16 1150 24 HOH HOH . H 8 HOH A 17 1151 25 HOH HOH . H 8 HOH A 18 1152 26 HOH HOH . H 8 HOH A 19 1153 27 HOH HOH . H 8 HOH A 20 1154 28 HOH HOH . H 8 HOH A 21 1155 34 HOH HOH . H 8 HOH A 22 1156 35 HOH HOH . H 8 HOH A 23 1157 36 HOH HOH . H 8 HOH A 24 1158 37 HOH HOH . H 8 HOH A 25 1159 38 HOH HOH . H 8 HOH A 26 1160 39 HOH HOH . H 8 HOH A 27 1161 40 HOH HOH . H 8 HOH A 28 1162 41 HOH HOH . H 8 HOH A 29 1163 42 HOH HOH . H 8 HOH A 30 1164 43 HOH HOH . H 8 HOH A 31 1165 45 HOH HOH . H 8 HOH A 32 1166 46 HOH HOH . H 8 HOH A 33 1167 47 HOH HOH . H 8 HOH A 34 1168 48 HOH HOH . H 8 HOH A 35 1169 49 HOH HOH . H 8 HOH A 36 1170 50 HOH HOH . H 8 HOH A 37 1171 51 HOH HOH . H 8 HOH A 38 1172 52 HOH HOH . H 8 HOH A 39 1173 53 HOH HOH . H 8 HOH A 40 1174 54 HOH HOH . H 8 HOH A 41 1175 55 HOH HOH . H 8 HOH A 42 1176 56 HOH HOH . H 8 HOH A 43 1177 57 HOH HOH . H 8 HOH A 44 1178 58 HOH HOH . H 8 HOH A 45 1179 59 HOH HOH . H 8 HOH A 46 1180 60 HOH HOH . H 8 HOH A 47 1181 61 HOH HOH . H 8 HOH A 48 1182 62 HOH HOH . H 8 HOH A 49 1183 64 HOH HOH . H 8 HOH A 50 1184 66 HOH HOH . H 8 HOH A 51 1185 67 HOH HOH . H 8 HOH A 52 1186 68 HOH HOH . H 8 HOH A 53 1187 69 HOH HOH . H 8 HOH A 54 1188 70 HOH HOH . H 8 HOH A 55 1189 72 HOH HOH . H 8 HOH A 56 1190 73 HOH HOH . H 8 HOH A 57 1191 74 HOH HOH . H 8 HOH A 58 1192 75 HOH HOH . H 8 HOH A 59 1193 77 HOH HOH . H 8 HOH A 60 1194 78 HOH HOH . H 8 HOH A 61 1195 79 HOH HOH . H 8 HOH A 62 1196 80 HOH HOH . H 8 HOH A 63 1197 81 HOH HOH . H 8 HOH A 64 1198 82 HOH HOH . H 8 HOH A 65 1199 83 HOH HOH . H 8 HOH A 66 1200 84 HOH HOH . H 8 HOH A 67 1201 85 HOH HOH . H 8 HOH A 68 1202 86 HOH HOH . H 8 HOH A 69 1203 87 HOH HOH . H 8 HOH A 70 1204 88 HOH HOH . H 8 HOH A 71 1205 89 HOH HOH . H 8 HOH A 72 1206 90 HOH HOH . H 8 HOH A 73 1207 92 HOH HOH . H 8 HOH A 74 1208 93 HOH HOH . H 8 HOH A 75 1209 95 HOH HOH . H 8 HOH A 76 1210 96 HOH HOH . H 8 HOH A 77 1211 97 HOH HOH . H 8 HOH A 78 1212 98 HOH HOH . H 8 HOH A 79 1213 99 HOH HOH . H 8 HOH A 80 1214 100 HOH HOH . H 8 HOH A 81 1215 101 HOH HOH . H 8 HOH A 82 1216 102 HOH HOH . H 8 HOH A 83 1217 103 HOH HOH . H 8 HOH A 84 1218 104 HOH HOH . H 8 HOH A 85 1219 105 HOH HOH . H 8 HOH A 86 1220 107 HOH HOH . H 8 HOH A 87 1221 108 HOH HOH . H 8 HOH A 88 1223 116 HOH HOH . H 8 HOH A 89 1224 117 HOH HOH . H 8 HOH A 90 1225 122 HOH HOH . H 8 HOH A 91 1226 151 HOH HOH . H 8 HOH A 92 1227 152 HOH HOH . H 8 HOH A 93 1228 156 HOH HOH . H 8 HOH A 94 1229 158 HOH HOH . H 8 HOH A 95 1230 160 HOH HOH . H 8 HOH A 96 1231 161 HOH HOH . H 8 HOH A 97 1232 165 HOH HOH . H 8 HOH A 98 1233 168 HOH HOH . H 8 HOH A 99 1234 169 HOH HOH . H 8 HOH A 100 1235 170 HOH HOH . H 8 HOH A 101 1236 171 HOH HOH . H 8 HOH A 102 1237 173 HOH HOH . H 8 HOH A 103 1238 176 HOH HOH . H 8 HOH A 104 1239 181 HOH HOH . H 8 HOH A 105 1240 183 HOH HOH . H 8 HOH A 106 1241 185 HOH HOH . H 8 HOH A 107 1242 186 HOH HOH . H 8 HOH A 108 1243 189 HOH HOH . H 8 HOH A 109 1244 190 HOH HOH . H 8 HOH A 110 1245 191 HOH HOH . H 8 HOH A 111 1246 192 HOH HOH . H 8 HOH A 112 1247 193 HOH HOH . H 8 HOH A 113 1248 197 HOH HOH . I 8 HOH B 1 2 2 HOH HOH . I 8 HOH B 2 10 10 HOH HOH . I 8 HOH B 3 11 11 HOH HOH . I 8 HOH B 4 12 12 HOH HOH . I 8 HOH B 5 14 14 HOH HOH . I 8 HOH B 6 16 16 HOH HOH . I 8 HOH B 7 17 17 HOH HOH . I 8 HOH B 8 22 22 HOH HOH . I 8 HOH B 9 29 29 HOH HOH . I 8 HOH B 10 30 30 HOH HOH . I 8 HOH B 11 31 31 HOH HOH . I 8 HOH B 12 32 32 HOH HOH . I 8 HOH B 13 33 33 HOH HOH . I 8 HOH B 14 44 44 HOH HOH . I 8 HOH B 15 63 63 HOH HOH . I 8 HOH B 16 65 65 HOH HOH . I 8 HOH B 17 71 71 HOH HOH . I 8 HOH B 18 76 76 HOH HOH . I 8 HOH B 19 91 91 HOH HOH . I 8 HOH B 20 111 111 HOH HOH . I 8 HOH B 21 112 112 HOH HOH . I 8 HOH B 22 113 113 HOH HOH . I 8 HOH B 23 114 114 HOH HOH . I 8 HOH B 24 115 115 HOH HOH . I 8 HOH B 25 118 118 HOH HOH . I 8 HOH B 26 119 119 HOH HOH . I 8 HOH B 27 120 120 HOH HOH . I 8 HOH B 28 121 121 HOH HOH . I 8 HOH B 29 123 123 HOH HOH . I 8 HOH B 30 124 124 HOH HOH . I 8 HOH B 31 125 125 HOH HOH . I 8 HOH B 32 126 126 HOH HOH . I 8 HOH B 33 127 127 HOH HOH . I 8 HOH B 34 128 128 HOH HOH . I 8 HOH B 35 129 129 HOH HOH . I 8 HOH B 36 130 130 HOH HOH . I 8 HOH B 37 131 131 HOH HOH . I 8 HOH B 38 132 132 HOH HOH . I 8 HOH B 39 133 133 HOH HOH . I 8 HOH B 40 134 134 HOH HOH . I 8 HOH B 41 135 135 HOH HOH . I 8 HOH B 42 136 136 HOH HOH . I 8 HOH B 43 137 137 HOH HOH . I 8 HOH B 44 138 138 HOH HOH . I 8 HOH B 45 139 139 HOH HOH . I 8 HOH B 46 140 140 HOH HOH . I 8 HOH B 47 141 141 HOH HOH . I 8 HOH B 48 142 142 HOH HOH . I 8 HOH B 49 143 143 HOH HOH . I 8 HOH B 50 144 144 HOH HOH . I 8 HOH B 51 145 145 HOH HOH . I 8 HOH B 52 146 146 HOH HOH . I 8 HOH B 53 147 147 HOH HOH . I 8 HOH B 54 148 148 HOH HOH . I 8 HOH B 55 149 149 HOH HOH . I 8 HOH B 56 150 150 HOH HOH . I 8 HOH B 57 153 153 HOH HOH . I 8 HOH B 58 154 154 HOH HOH . I 8 HOH B 59 155 155 HOH HOH . I 8 HOH B 60 157 157 HOH HOH . I 8 HOH B 61 159 159 HOH HOH . I 8 HOH B 62 162 162 HOH HOH . I 8 HOH B 63 163 163 HOH HOH . I 8 HOH B 64 164 164 HOH HOH . I 8 HOH B 65 166 166 HOH HOH . I 8 HOH B 66 167 167 HOH HOH . I 8 HOH B 67 174 174 HOH HOH . I 8 HOH B 68 175 175 HOH HOH . I 8 HOH B 69 178 178 HOH HOH . I 8 HOH B 70 179 179 HOH HOH . I 8 HOH B 71 180 180 HOH HOH . I 8 HOH B 72 182 182 HOH HOH . I 8 HOH B 73 184 184 HOH HOH . I 8 HOH B 74 188 188 HOH HOH . I 8 HOH B 75 194 194 HOH HOH . I 8 HOH B 76 195 195 HOH HOH . J 8 HOH C 1 1222 110 HOH HOH . J 8 HOH C 2 1249 201 HOH HOH . J 8 HOH C 3 1250 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N ARG . . . G 7 66.31 34.128 73.852 1 72.51 ? N ARG 426 A 1 HETATM 2 C CA ARG . . . G 7 65.274 34.861 73.153 1 72.55 ? CA ARG 426 A 1 HETATM 3 C C ARG . . . G 7 64.015 34.04 72.955 1 73.42 ? C ARG 426 A 1 HETATM 4 O O ARG . . . G 7 63.75 33.21 73.855 1 75 ? O ARG 426 A 1 HETATM 5 C CB ARG . . . G 7 65.737 35.524 71.856 1 73.44 ? CB ARG 426 A 1 HETATM 6 C CG ARG . . . G 7 64.971 36.817 71.593 1 67.57 ? CG ARG 426 A 1 HETATM 7 C CD ARG . . . G 7 65.846 37.986 71.169 1 68.97 ? CD ARG 426 A 1 HETATM 8 N NE ARG . . . G 7 65.442 38.527 69.871 1 74.31 ? NE ARG 426 A 1 HETATM 9 C CZ ARG . . . G 7 66.003 39.567 69.234 1 75 ? CZ ARG 426 A 1 HETATM 10 N NH1 ARG . . . G 7 67.036 40.255 69.76 1 75 ? NH1 ARG 426 A 1 HETATM 11 N NH2 ARG . . . G 7 65.502 39.938 68.048 1 73.94 ? NH2 ARG 426 A 1 HETATM 12 O OXT ARG . . . G 7 63.339 34.31 71.936 1 75 ? OXT ARG 426 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 12 #