data_1BCU # _model_server_result.job_id '_SpVDPqCJvFLib1cfrrOfg' _model_server_result.datetime_utc '2024-12-01 01:28:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":280}' # _entry.id 1BCU # _exptl.entry_id 1BCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 209.247 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description PROFLAVIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.61 _cell.angle_gamma 90 _cell.entry_id 1BCU _cell.length_a 71.15 _cell.length_b 72.25 _cell.length_c 72.67 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 C C GLU 9 I GLU 62 1_555 C N TYS 10 I TYS 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 C C TYS 10 I TYS 63 1_555 C N LEU 11 I LEU 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C13 H11 N3' _chem_comp.formula_weight 209.247 _chem_comp.id PRL _chem_comp.mon_nstd_flag . _chem_comp.name PROFLAVIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 PRL doub 260 n y C1 C13 PRL sing 261 n y C1 H1 PRL sing 262 n n C2 C3 PRL sing 263 n y C2 H2 PRL sing 264 n n C3 C4 PRL doub 265 n y C3 N15 PRL sing 266 n n C4 C11 PRL sing 267 n y C4 H4 PRL sing 268 n n C5 C6 PRL doub 269 n y C5 C14 PRL sing 270 n y C5 H5 PRL sing 271 n n C6 C7 PRL sing 272 n y C6 N16 PRL sing 273 n n C7 C8 PRL doub 274 n y C7 H7 PRL sing 275 n n C8 C12 PRL sing 276 n y C8 H8 PRL sing 277 n n C9 C12 PRL doub 278 n y C9 C13 PRL sing 279 n y C9 H9 PRL sing 280 n n N10 C11 PRL sing 281 n y N10 C14 PRL doub 282 n y C11 C13 PRL doub 283 n y C12 C14 PRL sing 284 n y N15 HNF1 PRL sing 285 n n N15 HNF2 PRL sing 286 n n N16 HNG1 PRL sing 287 n n N16 HNG2 PRL sing 288 n n # _atom_sites.entry_id 1BCU _atom_sites.fract_transf_matrix[1][1] 0.014055 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002633 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013841 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 PRL H 1 280 280 PRL PRL . E 5 HOH L 1 300 300 HOH HOH . E 5 HOH L 2 309 309 HOH HOH . E 5 HOH L 3 310 310 HOH HOH . E 5 HOH L 4 311 311 HOH HOH . E 5 HOH L 5 314 314 HOH HOH . E 5 HOH L 6 322 322 HOH HOH . E 5 HOH L 7 331 331 HOH HOH . E 5 HOH L 8 340 340 HOH HOH . E 5 HOH L 9 372 372 HOH HOH . E 5 HOH L 10 373 373 HOH HOH . E 5 HOH L 11 377 377 HOH HOH . E 5 HOH L 12 380 380 HOH HOH . E 5 HOH L 13 382 382 HOH HOH . E 5 HOH L 14 406 406 HOH HOH . E 5 HOH L 15 408 408 HOH HOH . E 5 HOH L 16 409 409 HOH HOH . E 5 HOH L 17 415 415 HOH HOH . E 5 HOH L 18 416 416 HOH HOH . E 5 HOH L 19 417 417 HOH HOH . E 5 HOH L 20 418 418 HOH HOH . E 5 HOH L 21 419 419 HOH HOH . E 5 HOH L 22 420 420 HOH HOH . E 5 HOH L 23 421 421 HOH HOH . E 5 HOH L 24 422 422 HOH HOH . E 5 HOH L 25 490 490 HOH HOH . E 5 HOH L 26 497 497 HOH HOH . E 5 HOH L 27 532 532 HOH HOH . E 5 HOH L 28 538 538 HOH HOH . E 5 HOH L 29 603 603 HOH HOH . E 5 HOH L 30 613 613 HOH HOH . E 5 HOH L 31 618 618 HOH HOH . E 5 HOH L 32 621 621 HOH HOH . E 5 HOH L 33 622 622 HOH HOH . F 5 HOH H 1 301 301 HOH HOH . F 5 HOH H 2 304 304 HOH HOH . F 5 HOH H 3 305 305 HOH HOH . F 5 HOH H 4 306 306 HOH HOH . F 5 HOH H 5 308 308 HOH HOH . F 5 HOH H 6 312 312 HOH HOH . F 5 HOH H 7 313 313 HOH HOH . F 5 HOH H 8 315 315 HOH HOH . F 5 HOH H 9 316 316 HOH HOH . F 5 HOH H 10 317 317 HOH HOH . F 5 HOH H 11 318 318 HOH HOH . F 5 HOH H 12 319 319 HOH HOH . F 5 HOH H 13 320 320 HOH HOH . F 5 HOH H 14 321 321 HOH HOH . F 5 HOH H 15 323 323 HOH HOH . F 5 HOH H 16 324 324 HOH HOH . F 5 HOH H 17 325 325 HOH HOH . F 5 HOH H 18 326 326 HOH HOH . F 5 HOH H 19 327 327 HOH HOH . F 5 HOH H 20 328 328 HOH HOH . F 5 HOH H 21 329 329 HOH HOH . F 5 HOH H 22 330 330 HOH HOH . F 5 HOH H 23 332 332 HOH HOH . F 5 HOH H 24 333 333 HOH HOH . F 5 HOH H 25 334 334 HOH HOH . F 5 HOH H 26 335 335 HOH HOH . F 5 HOH H 27 336 336 HOH HOH . F 5 HOH H 28 338 338 HOH HOH . F 5 HOH H 29 339 339 HOH HOH . F 5 HOH H 30 341 341 HOH HOH . F 5 HOH H 31 342 342 HOH HOH . F 5 HOH H 32 343 343 HOH HOH . F 5 HOH H 33 344 344 HOH HOH . F 5 HOH H 34 345 345 HOH HOH . F 5 HOH H 35 346 346 HOH HOH . F 5 HOH H 36 348 348 HOH HOH . F 5 HOH H 37 349 349 HOH HOH . F 5 HOH H 38 350 350 HOH HOH . F 5 HOH H 39 352 352 HOH HOH . F 5 HOH H 40 353 353 HOH HOH . F 5 HOH H 41 354 354 HOH HOH . F 5 HOH H 42 355 355 HOH HOH . F 5 HOH H 43 356 356 HOH HOH . F 5 HOH H 44 357 357 HOH HOH . F 5 HOH H 45 358 358 HOH HOH . F 5 HOH H 46 359 359 HOH HOH . F 5 HOH H 47 360 360 HOH HOH . F 5 HOH H 48 361 361 HOH HOH . F 5 HOH H 49 362 362 HOH HOH . F 5 HOH H 50 365 365 HOH HOH . F 5 HOH H 51 366 366 HOH HOH . F 5 HOH H 52 367 367 HOH HOH . F 5 HOH H 53 368 368 HOH HOH . F 5 HOH H 54 369 369 HOH HOH . F 5 HOH H 55 370 370 HOH HOH . F 5 HOH H 56 371 371 HOH HOH . F 5 HOH H 57 375 375 HOH HOH . F 5 HOH H 58 376 376 HOH HOH . F 5 HOH H 59 378 378 HOH HOH . F 5 HOH H 60 379 379 HOH HOH . F 5 HOH H 61 383 383 HOH HOH . F 5 HOH H 62 384 384 HOH HOH . F 5 HOH H 63 386 386 HOH HOH . F 5 HOH H 64 387 387 HOH HOH . F 5 HOH H 65 388 388 HOH HOH . F 5 HOH H 66 389 389 HOH HOH . F 5 HOH H 67 390 390 HOH HOH . F 5 HOH H 68 391 391 HOH HOH . F 5 HOH H 69 392 392 HOH HOH . F 5 HOH H 70 393 393 HOH HOH . F 5 HOH H 71 394 394 HOH HOH . F 5 HOH H 72 395 395 HOH HOH . F 5 HOH H 73 396 396 HOH HOH . F 5 HOH H 74 398 398 HOH HOH . F 5 HOH H 75 399 399 HOH HOH . F 5 HOH H 76 400 400 HOH HOH . F 5 HOH H 77 402 402 HOH HOH . F 5 HOH H 78 403 403 HOH HOH . F 5 HOH H 79 404 404 HOH HOH . F 5 HOH H 80 405 405 HOH HOH . F 5 HOH H 81 407 407 HOH HOH . F 5 HOH H 82 410 410 HOH HOH . F 5 HOH H 83 412 412 HOH HOH . F 5 HOH H 84 413 413 HOH HOH . F 5 HOH H 85 414 414 HOH HOH . F 5 HOH H 86 423 423 HOH HOH . F 5 HOH H 87 424 424 HOH HOH . F 5 HOH H 88 425 425 HOH HOH . F 5 HOH H 89 426 426 HOH HOH . F 5 HOH H 90 427 427 HOH HOH . F 5 HOH H 91 428 428 HOH HOH . F 5 HOH H 92 429 429 HOH HOH . F 5 HOH H 93 430 430 HOH HOH . F 5 HOH H 94 432 432 HOH HOH . F 5 HOH H 95 434 434 HOH HOH . F 5 HOH H 96 435 435 HOH HOH . F 5 HOH H 97 436 436 HOH HOH . F 5 HOH H 98 437 437 HOH HOH . F 5 HOH H 99 438 438 HOH HOH . F 5 HOH H 100 439 439 HOH HOH . F 5 HOH H 101 440 440 HOH HOH . F 5 HOH H 102 441 441 HOH HOH . F 5 HOH H 103 447 447 HOH HOH . F 5 HOH H 104 449 449 HOH HOH . F 5 HOH H 105 450 450 HOH HOH . F 5 HOH H 106 451 451 HOH HOH . F 5 HOH H 107 452 452 HOH HOH . F 5 HOH H 108 453 453 HOH HOH . F 5 HOH H 109 454 454 HOH HOH . F 5 HOH H 110 455 455 HOH HOH . F 5 HOH H 111 456 456 HOH HOH . F 5 HOH H 112 458 458 HOH HOH . F 5 HOH H 113 459 459 HOH HOH . F 5 HOH H 114 460 460 HOH HOH . F 5 HOH H 115 461 461 HOH HOH . F 5 HOH H 116 462 462 HOH HOH . F 5 HOH H 117 464 464 HOH HOH . F 5 HOH H 118 465 465 HOH HOH . F 5 HOH H 119 466 466 HOH HOH . F 5 HOH H 120 467 467 HOH HOH . F 5 HOH H 121 469 469 HOH HOH . F 5 HOH H 122 470 470 HOH HOH . F 5 HOH H 123 471 471 HOH HOH . F 5 HOH H 124 472 472 HOH HOH . F 5 HOH H 125 473 473 HOH HOH . F 5 HOH H 126 474 474 HOH HOH . F 5 HOH H 127 475 475 HOH HOH . F 5 HOH H 128 476 476 HOH HOH . F 5 HOH H 129 477 477 HOH HOH . F 5 HOH H 130 478 478 HOH HOH . F 5 HOH H 131 479 479 HOH HOH . F 5 HOH H 132 480 480 HOH HOH . F 5 HOH H 133 482 482 HOH HOH . F 5 HOH H 134 485 485 HOH HOH . F 5 HOH H 135 486 486 HOH HOH . F 5 HOH H 136 487 487 HOH HOH . F 5 HOH H 137 491 491 HOH HOH . F 5 HOH H 138 493 493 HOH HOH . F 5 HOH H 139 494 494 HOH HOH . F 5 HOH H 140 495 495 HOH HOH . F 5 HOH H 141 498 498 HOH HOH . F 5 HOH H 142 499 499 HOH HOH . F 5 HOH H 143 502 502 HOH HOH . F 5 HOH H 144 503 503 HOH HOH . F 5 HOH H 145 504 504 HOH HOH . F 5 HOH H 146 505 505 HOH HOH . F 5 HOH H 147 506 506 HOH HOH . F 5 HOH H 148 507 507 HOH HOH . F 5 HOH H 149 511 511 HOH HOH . F 5 HOH H 150 512 512 HOH HOH . F 5 HOH H 151 513 513 HOH HOH . F 5 HOH H 152 515 515 HOH HOH . F 5 HOH H 153 516 516 HOH HOH . F 5 HOH H 154 519 519 HOH HOH . F 5 HOH H 155 520 520 HOH HOH . F 5 HOH H 156 521 521 HOH HOH . F 5 HOH H 157 522 522 HOH HOH . F 5 HOH H 158 523 523 HOH HOH . F 5 HOH H 159 524 524 HOH HOH . F 5 HOH H 160 525 525 HOH HOH . F 5 HOH H 161 526 526 HOH HOH . F 5 HOH H 162 528 528 HOH HOH . F 5 HOH H 163 529 529 HOH HOH . F 5 HOH H 164 530 530 HOH HOH . F 5 HOH H 165 531 531 HOH HOH . F 5 HOH H 166 533 533 HOH HOH . F 5 HOH H 167 534 534 HOH HOH . F 5 HOH H 168 535 535 HOH HOH . F 5 HOH H 169 536 536 HOH HOH . F 5 HOH H 170 540 540 HOH HOH . F 5 HOH H 171 541 541 HOH HOH . F 5 HOH H 172 542 542 HOH HOH . F 5 HOH H 173 543 543 HOH HOH . F 5 HOH H 174 544 544 HOH HOH . F 5 HOH H 175 545 545 HOH HOH . F 5 HOH H 176 547 547 HOH HOH . F 5 HOH H 177 548 548 HOH HOH . F 5 HOH H 178 549 549 HOH HOH . F 5 HOH H 179 601 601 HOH HOH . F 5 HOH H 180 602 602 HOH HOH . F 5 HOH H 181 604 604 HOH HOH . F 5 HOH H 182 606 606 HOH HOH . F 5 HOH H 183 608 608 HOH HOH . F 5 HOH H 184 609 609 HOH HOH . F 5 HOH H 185 610 610 HOH HOH . F 5 HOH H 186 614 614 HOH HOH . F 5 HOH H 187 615 615 HOH HOH . F 5 HOH H 188 617 617 HOH HOH . F 5 HOH H 189 619 619 HOH HOH . F 5 HOH H 190 620 620 HOH HOH . F 5 HOH H 191 623 623 HOH HOH . G 5 HOH I 1 442 442 HOH HOH . G 5 HOH I 2 443 443 HOH HOH . G 5 HOH I 3 444 444 HOH HOH . G 5 HOH I 4 446 446 HOH HOH . G 5 HOH I 5 514 514 HOH HOH . G 5 HOH I 6 550 550 HOH HOH . G 5 HOH I 7 607 607 HOH HOH . G 5 HOH I 8 612 612 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PRL . . . D 4 8.982 23.182 49.516 1 42.66 ? C1 PRL 280 H 1 HETATM 2 C C2 PRL . . . D 4 9.67 23.649 48.475 1 41.34 ? C2 PRL 280 H 1 HETATM 3 C C3 PRL . . . D 4 10.665 22.851 47.794 1 41.48 ? C3 PRL 280 H 1 HETATM 4 C C4 PRL . . . D 4 10.902 21.573 48.264 1 42.39 ? C4 PRL 280 H 1 HETATM 5 C C5 PRL . . . D 4 9.939 17.864 51.143 1 51.19 ? C5 PRL 280 H 1 HETATM 6 C C6 PRL . . . D 4 9.231 17.253 52.163 1 53.68 ? C6 PRL 280 H 1 HETATM 7 C C7 PRL . . . D 4 8.222 18.03 52.852 1 53.72 ? C7 PRL 280 H 1 HETATM 8 C C8 PRL . . . D 4 7.968 19.299 52.528 1 52.85 ? C8 PRL 280 H 1 HETATM 9 C C9 PRL . . . D 4 8.475 21.272 51.058 1 49.14 ? C9 PRL 280 H 1 HETATM 10 N N10 PRL . . . D 4 10.385 19.776 49.768 1 48.93 ? N10 PRL 280 H 1 HETATM 11 C C11 PRL . . . D 4 10.196 21.07 49.336 1 46.51 ? C11 PRL 280 H 1 HETATM 12 C C12 PRL . . . D 4 8.69 19.965 51.464 1 51.17 ? C12 PRL 280 H 1 HETATM 13 C C13 PRL . . . D 4 9.19 21.846 50.02 1 46.5 ? C13 PRL 280 H 1 HETATM 14 C C14 PRL . . . D 4 9.691 19.173 50.793 1 50.64 ? C14 PRL 280 H 1 HETATM 15 N N15 PRL . . . D 4 11.274 23.326 46.684 1 39.11 ? N15 PRL 280 H 1 HETATM 16 N N16 PRL . . . D 4 9.453 15.962 52.502 1 55.5 ? N16 PRL 280 H 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 16 #