data_1BDG
#
_model_server_result.job_id            xLiy5zTMZpDCS9p1Hnx1nA 
_model_server_result.datetime_utc      '2024-10-24 04:26:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bdg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":501}' 
#
_entry.id    1BDG 
#
_exptl.entry_id    1BDG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              180.156 
_entity.id                          2 
_entity.src_method                  man 
_entity.type                        non-polymer 
_entity.pdbx_description            alpha-D-glucopyranose 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BDG 
_cell.length_a            114.3 
_cell.length_b            114.3 
_cell.length_c            155.2 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BDG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 205 A CYS 217 1_555 A SG CYS 212 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
disulf ? disulf2 A SG CYS 261 A CYS 272 1_555 A SG CYS 261 A CYS 272 12_556 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? 
#
_chem_comp.formula           'C6 H12 O6' 
_chem_comp.formula_weight    180.156 
_chem_comp.id                GLC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              alpha-D-glucopyranose 
_chem_comp.type              'd-saccharide, alpha linking' 
_chem_comp.pdbx_synonyms     alpha-D-glucose;D-glucose;glucose 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 GLC sing 83 n n 
C1 O1 GLC sing 84 n n 
C1 O5 GLC sing 85 n n 
C1 H1 GLC sing 86 n n 
C2 C3 GLC sing 87 n n 
C2 O2 GLC sing 88 n n 
C2 H2 GLC sing 89 n n 
C3 C4 GLC sing 90 n n 
C3 O3 GLC sing 91 n n 
C3 H3 GLC sing 92 n n 
C4 C5 GLC sing 93 n n 
C4 O4 GLC sing 94 n n 
C4 H4 GLC sing 95 n n 
C5 C6 GLC sing 96 n n 
C5 O5 GLC sing 97 n n 
C5 H5 GLC sing 98 n n 
C6 O6 GLC sing 99 n n 
C6 H61 GLC sing 100 n n 
C6 H62 GLC sing 101 n n 
O1 HO1 GLC sing 102 n n 
O2 HO2 GLC sing 103 n n 
O3 HO3 GLC sing 104 n n 
O4 HO4 GLC sing 105 n n 
O6 HO6 GLC sing 106 n n 
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.identifier
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
GLC DGlcpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 
GLC a-D-glucopyranose 'COMMON NAME' GMML 1 
GLC a-D-Glcp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 
GLC Glc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 
#
_atom_sites.entry_id                     1BDG 
_atom_sites.fract_transf_matrix[1][1]    0.008749 
_atom_sites.fract_transf_matrix[1][2]    0.005051 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010102 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006443 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 GLC A 1 501 501 GLC GLC . 
C 3 SO4 A 1 502 502 SO4 SO4 . 
D 3 SO4 A 1 503 503 SO4 SO4 . 
E 3 SO4 A 1 504 504 SO4 SO4 . 
F 4 HOH A 1 603 603 HOH HOH . 
F 4 HOH A 2 604 604 HOH HOH . 
F 4 HOH A 3 605 605 HOH HOH . 
F 4 HOH A 4 606 606 HOH HOH . 
F 4 HOH A 5 608 608 HOH HOH . 
F 4 HOH A 6 609 609 HOH HOH . 
F 4 HOH A 7 611 611 HOH HOH . 
F 4 HOH A 8 612 612 HOH HOH . 
F 4 HOH A 9 613 613 HOH HOH . 
F 4 HOH A 10 614 614 HOH HOH . 
F 4 HOH A 11 615 615 HOH HOH . 
F 4 HOH A 12 616 616 HOH HOH . 
F 4 HOH A 13 617 617 HOH HOH . 
F 4 HOH A 14 618 618 HOH HOH . 
F 4 HOH A 15 619 619 HOH HOH . 
F 4 HOH A 16 620 620 HOH HOH . 
F 4 HOH A 17 621 621 HOH HOH . 
F 4 HOH A 18 624 624 HOH HOH . 
F 4 HOH A 19 626 626 HOH HOH . 
F 4 HOH A 20 627 627 HOH HOH . 
F 4 HOH A 21 628 628 HOH HOH . 
F 4 HOH A 22 629 629 HOH HOH . 
F 4 HOH A 23 630 630 HOH HOH . 
F 4 HOH A 24 631 631 HOH HOH . 
F 4 HOH A 25 632 632 HOH HOH . 
F 4 HOH A 26 633 633 HOH HOH . 
F 4 HOH A 27 634 634 HOH HOH . 
F 4 HOH A 28 636 636 HOH HOH . 
F 4 HOH A 29 637 637 HOH HOH . 
F 4 HOH A 30 638 638 HOH HOH . 
F 4 HOH A 31 639 639 HOH HOH . 
F 4 HOH A 32 640 640 HOH HOH . 
F 4 HOH A 33 642 642 HOH HOH . 
F 4 HOH A 34 643 643 HOH HOH . 
F 4 HOH A 35 644 644 HOH HOH . 
F 4 HOH A 36 645 645 HOH HOH . 
F 4 HOH A 37 646 646 HOH HOH . 
F 4 HOH A 38 648 648 HOH HOH . 
F 4 HOH A 39 649 649 HOH HOH . 
F 4 HOH A 40 650 650 HOH HOH . 
F 4 HOH A 41 651 651 HOH HOH . 
F 4 HOH A 42 652 652 HOH HOH . 
F 4 HOH A 43 653 653 HOH HOH . 
F 4 HOH A 44 654 654 HOH HOH . 
F 4 HOH A 45 655 655 HOH HOH . 
F 4 HOH A 46 656 656 HOH HOH . 
F 4 HOH A 47 658 658 HOH HOH . 
F 4 HOH A 48 659 659 HOH HOH . 
F 4 HOH A 49 660 660 HOH HOH . 
F 4 HOH A 50 662 662 HOH HOH . 
F 4 HOH A 51 664 664 HOH HOH . 
F 4 HOH A 52 665 665 HOH HOH . 
F 4 HOH A 53 666 666 HOH HOH . 
F 4 HOH A 54 667 667 HOH HOH . 
F 4 HOH A 55 669 669 HOH HOH . 
F 4 HOH A 56 771 771 HOH HOH . 
F 4 HOH A 57 772 772 HOH HOH . 
F 4 HOH A 58 774 774 HOH HOH . 
F 4 HOH A 59 775 775 HOH HOH . 
F 4 HOH A 60 777 777 HOH HOH . 
F 4 HOH A 61 779 779 HOH HOH . 
F 4 HOH A 62 783 783 HOH HOH . 
F 4 HOH A 63 788 788 HOH HOH . 
F 4 HOH A 64 789 789 HOH HOH . 
F 4 HOH A 65 790 790 HOH HOH . 
F 4 HOH A 66 793 793 HOH HOH . 
F 4 HOH A 67 795 795 HOH HOH . 
F 4 HOH A 68 796 796 HOH HOH . 
F 4 HOH A 69 799 799 HOH HOH . 
F 4 HOH A 70 800 800 HOH HOH . 
F 4 HOH A 71 801 801 HOH HOH . 
F 4 HOH A 72 802 802 HOH HOH . 
F 4 HOH A 73 807 807 HOH HOH . 
F 4 HOH A 74 808 808 HOH HOH . 
F 4 HOH A 75 809 809 HOH HOH . 
F 4 HOH A 76 812 812 HOH HOH . 
F 4 HOH A 77 813 813 HOH HOH . 
F 4 HOH A 78 901 901 HOH HOH . 
F 4 HOH A 79 902 902 HOH HOH . 
F 4 HOH A 80 903 903 HOH HOH . 
F 4 HOH A 81 905 905 HOH HOH . 
F 4 HOH A 82 906 906 HOH HOH . 
F 4 HOH A 83 909 909 HOH HOH . 
F 4 HOH A 84 913 913 HOH HOH . 
F 4 HOH A 85 914 914 HOH HOH . 
F 4 HOH A 86 915 915 HOH HOH . 
F 4 HOH A 87 916 916 HOH HOH . 
F 4 HOH A 88 918 918 HOH HOH . 
F 4 HOH A 89 920 920 HOH HOH . 
F 4 HOH A 90 921 921 HOH HOH . 
F 4 HOH A 91 922 922 HOH HOH . 
F 4 HOH A 92 923 923 HOH HOH . 
F 4 HOH A 93 924 924 HOH HOH . 
F 4 HOH A 94 925 925 HOH HOH . 
F 4 HOH A 95 929 929 HOH HOH . 
F 4 HOH A 96 931 931 HOH HOH . 
F 4 HOH A 97 933 933 HOH HOH . 
F 4 HOH A 98 934 934 HOH HOH . 
F 4 HOH A 99 935 935 HOH HOH . 
F 4 HOH A 100 937 937 HOH HOH . 
F 4 HOH A 101 938 938 HOH HOH . 
F 4 HOH A 102 939 939 HOH HOH . 
F 4 HOH A 103 940 940 HOH HOH . 
F 4 HOH A 104 941 941 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GLC . . . B 2 26.554 22.944 65.954 1 16.07 ? C1 GLC 501 A 1 
HETATM 2 C C2 GLC . . . B 2 25.602 22.027 65.186 1 14.99 ? C2 GLC 501 A 1 
HETATM 3 C C3 GLC . . . B 2 26.368 20.852 64.623 1 14.22 ? C3 GLC 501 A 1 
HETATM 4 C C4 GLC . . . B 2 27.518 21.355 63.768 1 13.69 ? C4 GLC 501 A 1 
HETATM 5 C C5 GLC . . . B 2 28.403 22.257 64.6 1 10.91 ? C5 GLC 501 A 1 
HETATM 6 C C6 GLC . . . B 2 29.541 22.85 63.791 1 12.85 ? C6 GLC 501 A 1 
HETATM 7 O O1 GLC . . . B 2 27.15 22.2 66.963 1 18.87 ? O1 GLC 501 A 1 
HETATM 8 O O2 GLC . . . B 2 24.574 21.539 66.046 1 13.02 ? O2 GLC 501 A 1 
HETATM 9 O O3 GLC . . . B 2 25.512 20.04 63.833 1 14.67 ? O3 GLC 501 A 1 
HETATM 10 O O4 GLC . . . B 2 28.259 20.266 63.272 1 13.59 ? O4 GLC 501 A 1 
HETATM 11 O O5 GLC . . . B 2 27.627 23.35 65.095 1 12.68 ? O5 GLC 501 A 1 
HETATM 12 O O6 GLC . . . B 2 29.137 24.022 63.115 1 11.31 ? O6 GLC 501 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           12 
#