data_1BDL
#
_model_server_result.job_id            2dpn5zTzmcMc9eiKsvbG9Q 
_model_server_result.datetime_utc      '2024-11-12 22:13:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bdl 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":600}' 
#
_entry.id    1BDL 
#
_exptl.entry_id    1BDL 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              534.69 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BDL 
_cell.length_a            63.41 
_cell.length_b            63.41 
_cell.length_c            83.55 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BDL 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C31 H42 N4 O4' 
_chem_comp.formula_weight    534.69 
_chem_comp.id                IM1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IM1 sing 173 n n 
C1 C3 IM1 sing 174 n n 
C1 C4 IM1 sing 175 n n 
C1 O5 IM1 sing 176 n n 
C2 H1 IM1 sing 177 n n 
C2 H2 IM1 sing 178 n n 
C2 H3 IM1 sing 179 n n 
C3 H4 IM1 sing 180 n n 
C3 H5 IM1 sing 181 n n 
C3 H6 IM1 sing 182 n n 
C4 H7 IM1 sing 183 n n 
C4 H8 IM1 sing 184 n n 
C4 H9 IM1 sing 185 n n 
O5 C6 IM1 sing 186 n n 
C6 O7 IM1 doub 187 n n 
C6 N8 IM1 sing 188 n n 
N8 C9 IM1 sing 189 n n 
N8 H10 IM1 sing 190 n n 
C9 C10 IM1 sing 191 n n 
C9 C17 IM1 sing 192 n n 
C9 H11 IM1 sing 193 n n 
C10 C11 IM1 sing 194 n n 
C10 H12 IM1 sing 195 n n 
C10 H13 IM1 sing 196 n n 
C11 C12 IM1 doub 197 n y 
C11 C16 IM1 sing 198 n y 
C12 C13 IM1 sing 199 n y 
C12 H14 IM1 sing 200 n n 
C13 C14 IM1 doub 201 n y 
C13 H15 IM1 sing 202 n n 
C14 C15 IM1 sing 203 n y 
C14 H16 IM1 sing 204 n n 
C15 C16 IM1 doub 205 n y 
C15 H17 IM1 sing 206 n n 
C16 H18 IM1 sing 207 n n 
C17 O18 IM1 sing 208 n n 
C17 C19 IM1 sing 209 n n 
C17 H19 IM1 sing 210 n n 
O18 H20 IM1 sing 211 n n 
C19 C20 IM1 sing 212 n n 
C19 H21 IM1 sing 213 n n 
C19 H22 IM1 sing 214 n n 
C20 C21 IM1 sing 215 n n 
C20 C28 IM1 sing 216 n n 
C20 H23 IM1 sing 217 n n 
C21 C22 IM1 sing 218 n n 
C21 H24 IM1 sing 219 n n 
C21 H25 IM1 sing 220 n n 
C22 C23 IM1 doub 221 n y 
C22 C27 IM1 sing 222 n y 
C23 C24 IM1 sing 223 n y 
C23 H26 IM1 sing 224 n n 
C24 C25 IM1 doub 225 n y 
C24 H27 IM1 sing 226 n n 
C25 C26 IM1 sing 227 n y 
C25 H28 IM1 sing 228 n n 
C26 C27 IM1 doub 229 n y 
C26 H29 IM1 sing 230 n n 
C27 H30 IM1 sing 231 n n 
C28 O29 IM1 doub 232 n n 
C28 N30 IM1 sing 233 n n 
N30 C31 IM1 sing 234 n n 
N30 H31 IM1 sing 235 n n 
C31 C32 IM1 sing 236 n n 
C31 C35 IM1 sing 237 n n 
C31 H32 IM1 sing 238 n n 
C32 C33 IM1 sing 239 n n 
C32 C34 IM1 sing 240 n n 
C32 H33 IM1 sing 241 n n 
C33 H34 IM1 sing 242 n n 
C33 H35 IM1 sing 243 n n 
C33 H36 IM1 sing 244 n n 
C34 H37 IM1 sing 245 n n 
C34 H38 IM1 sing 246 n n 
C34 H39 IM1 sing 247 n n 
C35 N36 IM1 sing 248 n y 
C35 N39 IM1 doub 249 n y 
N36 C37 IM1 sing 250 n y 
N36 H40 IM1 sing 251 n n 
C37 C38 IM1 doub 252 n y 
C37 H41 IM1 sing 253 n n 
C38 N39 IM1 sing 254 n y 
C38 H42 IM1 sing 255 n n 
#
_atom_sites.entry_id                     1BDL 
_atom_sites.fract_transf_matrix[1][1]    0.01577 
_atom_sites.fract_transf_matrix[1][2]    0.009105 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011969 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IM1 A 1 400 400 IM1 IM1 . 
D 2 IM1 B 1 600 600 IM1 IM1 . 
E 3 HOH A 1 500 500 HOH HOH . 
E 3 HOH A 2 502 502 HOH HOH . 
E 3 HOH A 3 503 503 HOH HOH . 
F 3 HOH B 1 501 501 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IM1 . . . D 2 -5.673 20.887 15.201 0.93 23.01 ? C1 IM1 600 B 1 
HETATM 2 C C2 IM1 . . . D 2 -5.446 19.853 14.1 0.93 23.01 ? C2 IM1 600 B 1 
HETATM 3 C C3 IM1 . . . D 2 -4.392 21.694 15.414 0.93 23.01 ? C3 IM1 600 B 1 
HETATM 4 C C4 IM1 . . . D 2 -6.774 21.835 14.74 0.93 23.01 ? C4 IM1 600 B 1 
HETATM 5 O O5 IM1 . . . D 2 -6.117 20.318 16.401 0.93 23.01 ? O5 IM1 600 B 1 
HETATM 6 C C6 IM1 . . . D 2 -5.448 19.25 17.012 0.93 23.01 ? C6 IM1 600 B 1 
HETATM 7 O O7 IM1 . . . D 2 -5.943 18.124 16.967 0.93 23.01 ? O7 IM1 600 B 1 
HETATM 8 N N8 IM1 . . . D 2 -4.296 19.443 17.653 0.93 23.01 ? N8 IM1 600 B 1 
HETATM 9 C C9 IM1 . . . D 2 -3.618 18.318 18.28 0.93 23.01 ? C9 IM1 600 B 1 
HETATM 10 C C10 IM1 . . . D 2 -2.182 18.769 18.619 0.93 23.01 ? C10 IM1 600 B 1 
HETATM 11 C C11 IM1 . . . D 2 -1.179 17.615 18.63 0.93 23.01 ? C11 IM1 600 B 1 
HETATM 12 C C12 IM1 . . . D 2 0.056 17.8 19.252 0.93 23.01 ? C12 IM1 600 B 1 
HETATM 13 C C13 IM1 . . . D 2 0.987 16.763 19.274 0.93 23.01 ? C13 IM1 600 B 1 
HETATM 14 C C14 IM1 . . . D 2 0.69 15.542 18.668 0.93 23.01 ? C14 IM1 600 B 1 
HETATM 15 C C15 IM1 . . . D 2 -0.54 15.345 18.046 0.93 23.01 ? C15 IM1 600 B 1 
HETATM 16 C C16 IM1 . . . D 2 -1.471 16.382 18.025 0.93 23.01 ? C16 IM1 600 B 1 
HETATM 17 C C17 IM1 . . . D 2 -4.406 17.808 19.537 0.93 23.01 ? C17 IM1 600 B 1 
HETATM 18 O O18 IM1 . . . D 2 -4.124 16.403 19.602 0.93 23.01 ? O18 IM1 600 B 1 
HETATM 19 C C19 IM1 . . . D 2 -4.058 18.512 20.856 0.93 23.01 ? C19 IM1 600 B 1 
HETATM 20 C C20 IM1 . . . D 2 -4.649 18.038 22.172 0.93 23.01 ? C20 IM1 600 B 1 
HETATM 21 C C21 IM1 . . . D 2 -4.013 18.938 23.239 0.93 23.01 ? C21 IM1 600 B 1 
HETATM 22 C C22 IM1 . . . D 2 -4.456 18.743 24.684 0.93 23.01 ? C22 IM1 600 B 1 
HETATM 23 C C23 IM1 . . . D 2 -5.127 19.774 25.349 0.93 23.01 ? C23 IM1 600 B 1 
HETATM 24 C C24 IM1 . . . D 2 -5.509 19.608 26.677 0.93 23.01 ? C24 IM1 600 B 1 
HETATM 25 C C25 IM1 . . . D 2 -5.217 18.416 27.336 0.93 23.01 ? C25 IM1 600 B 1 
HETATM 26 C C26 IM1 . . . D 2 -4.555 17.389 26.671 0.93 23.01 ? C26 IM1 600 B 1 
HETATM 27 C C27 IM1 . . . D 2 -4.168 17.551 25.347 0.93 23.01 ? C27 IM1 600 B 1 
HETATM 28 C C28 IM1 . . . D 2 -6.179 18.073 22.222 0.93 23.01 ? C28 IM1 600 B 1 
HETATM 29 O O29 IM1 . . . D 2 -6.842 19.04 21.826 0.93 23.01 ? O29 IM1 600 B 1 
HETATM 30 N N30 IM1 . . . D 2 -6.722 16.98 22.746 0.93 23.01 ? N30 IM1 600 B 1 
HETATM 31 C C31 IM1 . . . D 2 -8.157 16.786 22.919 0.93 23.01 ? C31 IM1 600 B 1 
HETATM 32 C C32 IM1 . . . D 2 -8.618 15.383 22.439 0.93 23.01 ? C32 IM1 600 B 1 
HETATM 33 C C34 IM1 . . . D 2 -8.468 15.327 20.938 0.93 23.01 ? C34 IM1 600 B 1 
HETATM 34 C C35 IM1 . . . D 2 -8.301 16.883 24.434 0.93 23.01 ? C35 IM1 600 B 1 
HETATM 35 N N36 IM1 . . . D 2 -8.2 15.906 25.317 0.93 23.01 ? N36 IM1 600 B 1 
HETATM 36 C C37 IM1 . . . D 2 -8.291 16.536 26.539 0.93 23.01 ? C37 IM1 600 B 1 
HETATM 37 C C38 IM1 . . . D 2 -8.444 17.9 26.304 0.93 23.01 ? C38 IM1 600 B 1 
HETATM 38 N N39 IM1 . . . D 2 -8.454 18.079 24.941 0.93 23.01 ? N39 IM1 600 B 1 
#
_model_server_stats.io_time_ms              48 
_model_server_stats.parse_time_ms           5 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           216 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           38 
#