data_1BDO # _model_server_result.job_id qyrPIOj6CYczstayZmoE9w _model_server_result.datetime_utc '2024-12-06 08:31:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bdo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":157}' # _entry.id 1BDO # _exptl.entry_id 1BDO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BDO _cell.length_a 65.46 _cell.length_b 37.26 _cell.length_c 35.45 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BDO _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 37.26 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 46 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 122 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C11 _struct_conn.ptnr2_label_comp_id BTN _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id BTN _struct_conn.ptnr2_auth_seq_id 157 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.329 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 1BDO _atom_sites.fract_transf_matrix[1][1] 0.015277 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.026838 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.028209 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BTN A 1 157 122 BTN BTN . C 3 HOH A 1 201 201 HOH HOH . C 3 HOH A 2 202 202 HOH HOH . C 3 HOH A 3 203 203 HOH HOH . C 3 HOH A 4 204 204 HOH HOH . C 3 HOH A 5 206 206 HOH HOH . C 3 HOH A 6 207 207 HOH HOH . C 3 HOH A 7 209 209 HOH HOH . C 3 HOH A 8 210 210 HOH HOH . C 3 HOH A 9 213 213 HOH HOH . C 3 HOH A 10 214 214 HOH HOH . C 3 HOH A 11 215 215 HOH HOH . C 3 HOH A 12 216 216 HOH HOH . C 3 HOH A 13 217 217 HOH HOH . C 3 HOH A 14 218 218 HOH HOH . C 3 HOH A 15 220 220 HOH HOH . C 3 HOH A 16 222 222 HOH HOH . C 3 HOH A 17 223 223 HOH HOH . C 3 HOH A 18 224 224 HOH HOH . C 3 HOH A 19 226 226 HOH HOH . C 3 HOH A 20 227 227 HOH HOH . C 3 HOH A 21 229 229 HOH HOH . C 3 HOH A 22 231 231 HOH HOH . C 3 HOH A 23 236 236 HOH HOH . C 3 HOH A 24 251 251 HOH HOH . C 3 HOH A 25 252 252 HOH HOH . C 3 HOH A 26 254 254 HOH HOH . C 3 HOH A 27 255 255 HOH HOH . C 3 HOH A 28 257 257 HOH HOH . C 3 HOH A 29 258 258 HOH HOH . C 3 HOH A 30 260 260 HOH HOH . C 3 HOH A 31 261 261 HOH HOH . C 3 HOH A 32 262 262 HOH HOH . C 3 HOH A 33 263 263 HOH HOH . C 3 HOH A 34 264 264 HOH HOH . C 3 HOH A 35 265 265 HOH HOH . C 3 HOH A 36 266 266 HOH HOH . C 3 HOH A 37 267 267 HOH HOH . C 3 HOH A 38 270 270 HOH HOH . C 3 HOH A 39 271 271 HOH HOH . C 3 HOH A 40 272 272 HOH HOH . C 3 HOH A 41 274 274 HOH HOH . C 3 HOH A 42 276 276 HOH HOH . C 3 HOH A 43 279 279 HOH HOH . C 3 HOH A 44 282 282 HOH HOH . C 3 HOH A 45 302 302 HOH HOH . C 3 HOH A 46 303 303 HOH HOH . C 3 HOH A 47 304 304 HOH HOH . C 3 HOH A 48 305 305 HOH HOH . C 3 HOH A 49 306 306 HOH HOH . C 3 HOH A 50 308 308 HOH HOH . C 3 HOH A 51 309 309 HOH HOH . C 3 HOH A 52 311 311 HOH HOH . C 3 HOH A 53 312 312 HOH HOH . C 3 HOH A 54 314 314 HOH HOH . C 3 HOH A 55 316 316 HOH HOH . C 3 HOH A 56 317 317 HOH HOH . C 3 HOH A 57 321 321 HOH HOH . C 3 HOH A 58 322 322 HOH HOH . C 3 HOH A 59 323 323 HOH HOH . C 3 HOH A 60 326 326 HOH HOH . C 3 HOH A 61 327 327 HOH HOH . C 3 HOH A 62 328 328 HOH HOH . C 3 HOH A 63 329 329 HOH HOH . C 3 HOH A 64 330 330 HOH HOH . C 3 HOH A 65 331 331 HOH HOH . C 3 HOH A 66 334 334 HOH HOH . C 3 HOH A 67 335 335 HOH HOH . C 3 HOH A 68 336 336 HOH HOH . C 3 HOH A 69 337 337 HOH HOH . C 3 HOH A 70 339 339 HOH HOH . C 3 HOH A 71 340 340 HOH HOH . C 3 HOH A 72 351 351 HOH HOH . C 3 HOH A 73 353 353 HOH HOH . C 3 HOH A 74 354 354 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . B 2 13.97 19.357 9.427 1 33.49 ? C11 BTN 157 A 1 HETATM 2 O O11 BTN . . . B 2 13.449 18.259 9.601 1 36.32 ? O11 BTN 157 A 1 HETATM 3 C C10 BTN . . . B 2 13.213 20.634 9.732 1 30.01 ? C10 BTN 157 A 1 HETATM 4 C C9 BTN . . . B 2 12.268 21.064 8.611 1 27.06 ? C9 BTN 157 A 1 HETATM 5 C C8 BTN . . . B 2 13.012 21.325 7.318 1 23.16 ? C8 BTN 157 A 1 HETATM 6 C C7 BTN . . . B 2 12.21 22.204 6.389 1 18.54 ? C7 BTN 157 A 1 HETATM 7 C C2 BTN . . . B 2 12.786 22.299 4.97 1 14.72 ? C2 BTN 157 A 1 HETATM 8 S S1 BTN . . . B 2 13.254 23.985 4.424 1 14.53 ? S1 BTN 157 A 1 HETATM 9 C C6 BTN . . . B 2 13.149 23.44 2.682 1 10.74 ? C6 BTN 157 A 1 HETATM 10 C C5 BTN . . . B 2 11.972 22.473 2.606 1 11.61 ? C5 BTN 157 A 1 HETATM 11 N N1 BTN . . . B 2 10.74 23.208 2.369 1 11.28 ? N1 BTN 157 A 1 HETATM 12 C C3 BTN . . . B 2 9.838 23.08 3.342 1 14.49 ? C3 BTN 157 A 1 HETATM 13 O O3 BTN . . . B 2 8.692 23.519 3.336 1 13.78 ? O3 BTN 157 A 1 HETATM 14 N N2 BTN . . . B 2 10.386 22.304 4.28 1 14.76 ? N2 BTN 157 A 1 HETATM 15 C C4 BTN . . . B 2 11.723 21.831 3.945 1 11.16 ? C4 BTN 157 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 426 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #