data_1BDQ
#
_model_server_result.job_id            -PhTZTVgIJ6woX8QsNopgQ 
_model_server_result.datetime_utc      '2025-09-06 11:18:49' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bdq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":400}' 
#
_entry.id    1BDQ 
#
_exptl.entry_id    1BDQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              534.69 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BDQ 
_cell.length_a            62.91 
_cell.length_b            62.91 
_cell.length_c            83.56 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BDQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        169 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H42 N4 O4' 
_chem_comp.formula_weight    534.69 
_chem_comp.id                IM1 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "(2R,4S,5S,1'S)-2-PHENYLMETHYL-4-HYDROXY-5-(TERT-BUTOXYCARBONYL)AMINO-6-PHENYL HEXANOYL-N-(1'-IMIDAZO-2-YL)-2'-METHYLPROPANAMIDE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 IM1 sing 173 n n 
C1 C3 IM1 sing 174 n n 
C1 C4 IM1 sing 175 n n 
C1 O5 IM1 sing 176 n n 
C2 H1 IM1 sing 177 n n 
C2 H2 IM1 sing 178 n n 
C2 H3 IM1 sing 179 n n 
C3 H4 IM1 sing 180 n n 
C3 H5 IM1 sing 181 n n 
C3 H6 IM1 sing 182 n n 
C4 H7 IM1 sing 183 n n 
C4 H8 IM1 sing 184 n n 
C4 H9 IM1 sing 185 n n 
O5 C6 IM1 sing 186 n n 
C6 O7 IM1 doub 187 n n 
C6 N8 IM1 sing 188 n n 
N8 C9 IM1 sing 189 n n 
N8 H10 IM1 sing 190 n n 
C9 C10 IM1 sing 191 n n 
C9 C17 IM1 sing 192 n n 
C9 H11 IM1 sing 193 n n 
C10 C11 IM1 sing 194 n n 
C10 H12 IM1 sing 195 n n 
C10 H13 IM1 sing 196 n n 
C11 C12 IM1 doub 197 n y 
C11 C16 IM1 sing 198 n y 
C12 C13 IM1 sing 199 n y 
C12 H14 IM1 sing 200 n n 
C13 C14 IM1 doub 201 n y 
C13 H15 IM1 sing 202 n n 
C14 C15 IM1 sing 203 n y 
C14 H16 IM1 sing 204 n n 
C15 C16 IM1 doub 205 n y 
C15 H17 IM1 sing 206 n n 
C16 H18 IM1 sing 207 n n 
C17 O18 IM1 sing 208 n n 
C17 C19 IM1 sing 209 n n 
C17 H19 IM1 sing 210 n n 
O18 H20 IM1 sing 211 n n 
C19 C20 IM1 sing 212 n n 
C19 H21 IM1 sing 213 n n 
C19 H22 IM1 sing 214 n n 
C20 C21 IM1 sing 215 n n 
C20 C28 IM1 sing 216 n n 
C20 H23 IM1 sing 217 n n 
C21 C22 IM1 sing 218 n n 
C21 H24 IM1 sing 219 n n 
C21 H25 IM1 sing 220 n n 
C22 C23 IM1 doub 221 n y 
C22 C27 IM1 sing 222 n y 
C23 C24 IM1 sing 223 n y 
C23 H26 IM1 sing 224 n n 
C24 C25 IM1 doub 225 n y 
C24 H27 IM1 sing 226 n n 
C25 C26 IM1 sing 227 n y 
C25 H28 IM1 sing 228 n n 
C26 C27 IM1 doub 229 n y 
C26 H29 IM1 sing 230 n n 
C27 H30 IM1 sing 231 n n 
C28 O29 IM1 doub 232 n n 
C28 N30 IM1 sing 233 n n 
N30 C31 IM1 sing 234 n n 
N30 H31 IM1 sing 235 n n 
C31 C32 IM1 sing 236 n n 
C31 C35 IM1 sing 237 n n 
C31 H32 IM1 sing 238 n n 
C32 C33 IM1 sing 239 n n 
C32 C34 IM1 sing 240 n n 
C32 H33 IM1 sing 241 n n 
C33 H34 IM1 sing 242 n n 
C33 H35 IM1 sing 243 n n 
C33 H36 IM1 sing 244 n n 
C34 H37 IM1 sing 245 n n 
C34 H38 IM1 sing 246 n n 
C34 H39 IM1 sing 247 n n 
C35 N36 IM1 sing 248 n y 
C35 N39 IM1 doub 249 n y 
N36 C37 IM1 sing 250 n y 
N36 H40 IM1 sing 251 n n 
C37 C38 IM1 doub 252 n y 
C37 H41 IM1 sing 253 n n 
C38 N39 IM1 sing 254 n y 
C38 H42 IM1 sing 255 n n 
#
_atom_sites.entry_id                     1BDQ 
_atom_sites.fract_transf_matrix[1][1]    0.015896 
_atom_sites.fract_transf_matrix[1][2]    0.009177 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018355 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011967 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 IM1 B 1 400 400 IM1 IM1 . 
D 3 HOH A 1 501 501 HOH HOH . 
D 3 HOH A 2 503 503 HOH HOH . 
D 3 HOH A 3 505 505 HOH HOH . 
D 3 HOH A 4 507 507 HOH HOH . 
D 3 HOH A 5 510 510 HOH HOH . 
D 3 HOH A 6 511 511 HOH HOH . 
D 3 HOH A 7 513 513 HOH HOH . 
D 3 HOH A 8 518 518 HOH HOH . 
D 3 HOH A 9 520 520 HOH HOH . 
D 3 HOH A 10 521 521 HOH HOH . 
D 3 HOH A 11 524 524 HOH HOH . 
D 3 HOH A 12 526 526 HOH HOH . 
D 3 HOH A 13 529 529 HOH HOH . 
D 3 HOH A 14 539 539 HOH HOH . 
D 3 HOH A 15 542 542 HOH HOH . 
D 3 HOH A 16 544 544 HOH HOH . 
D 3 HOH A 17 557 557 HOH HOH . 
E 3 HOH B 1 500 500 HOH HOH . 
E 3 HOH B 2 502 502 HOH HOH . 
E 3 HOH B 3 504 504 HOH HOH . 
E 3 HOH B 4 506 506 HOH HOH . 
E 3 HOH B 5 508 508 HOH HOH . 
E 3 HOH B 6 512 512 HOH HOH . 
E 3 HOH B 7 514 514 HOH HOH . 
E 3 HOH B 8 517 517 HOH HOH . 
E 3 HOH B 9 519 519 HOH HOH . 
E 3 HOH B 10 523 523 HOH HOH . 
E 3 HOH B 11 527 527 HOH HOH . 
E 3 HOH B 12 531 531 HOH HOH . 
E 3 HOH B 13 533 533 HOH HOH . 
E 3 HOH B 14 534 534 HOH HOH . 
E 3 HOH B 15 536 536 HOH HOH . 
E 3 HOH B 16 537 537 HOH HOH . 
E 3 HOH B 17 538 538 HOH HOH . 
E 3 HOH B 18 540 540 HOH HOH . 
E 3 HOH B 19 543 543 HOH HOH . 
E 3 HOH B 20 546 546 HOH HOH . 
E 3 HOH B 21 548 548 HOH HOH . 
E 3 HOH B 22 549 549 HOH HOH . 
E 3 HOH B 23 551 551 HOH HOH . 
E 3 HOH B 24 554 554 HOH HOH . 
E 3 HOH B 25 555 555 HOH HOH . 
E 3 HOH B 26 556 556 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 IM1 . . . C 2 -10.652 15.608 33.122 1 19.31 ? C1 IM1 400 B 1 
HETATM 2 C C2 IM1 . . . C 2 -12.132 15.312 32.915 1 19.31 ? C2 IM1 400 B 1 
HETATM 3 C C3 IM1 . . . C 2 -9.839 14.368 33.45 1 19.31 ? C3 IM1 400 B 1 
HETATM 4 C C4 IM1 . . . C 2 -10.514 16.501 34.343 1 19.31 ? C4 IM1 400 B 1 
HETATM 5 O O5 IM1 . . . C 2 -10.118 16.278 32.027 1 19.31 ? O5 IM1 400 B 1 
HETATM 6 C C6 IM1 . . . C 2 -10.081 15.752 30.735 1 19.31 ? C6 IM1 400 B 1 
HETATM 7 O O7 IM1 . . . C 2 -9.169 14.989 30.422 1 19.31 ? O7 IM1 400 B 1 
HETATM 8 N N8 IM1 . . . C 2 -11.009 16.102 29.852 1 19.31 ? N8 IM1 400 B 1 
HETATM 9 C C9 IM1 . . . C 2 -11.034 15.62 28.477 1 19.31 ? C9 IM1 400 B 1 
HETATM 10 C C10 IM1 . . . C 2 -12.474 15.305 28.071 1 19.31 ? C10 IM1 400 B 1 
HETATM 11 C C11 IM1 . . . C 2 -13.069 14.193 28.93 1 19.31 ? C11 IM1 400 B 1 
HETATM 12 C C12 IM1 . . . C 2 -14.065 14.49 29.87 1 19.31 ? C12 IM1 400 B 1 
HETATM 13 C C13 IM1 . . . C 2 -14.59 13.458 30.648 1 19.31 ? C13 IM1 400 B 1 
HETATM 14 C C14 IM1 . . . C 2 -14.138 12.143 30.5 1 19.31 ? C14 IM1 400 B 1 
HETATM 15 C C15 IM1 . . . C 2 -13.156 11.853 29.57 1 19.31 ? C15 IM1 400 B 1 
HETATM 16 C C16 IM1 . . . C 2 -12.62 12.87 28.786 1 19.31 ? C16 IM1 400 B 1 
HETATM 17 C C17 IM1 . . . C 2 -10.421 16.7 27.541 1 19.31 ? C17 IM1 400 B 1 
HETATM 18 O O18 IM1 . . . C 2 -11.013 18.005 27.715 1 19.31 ? O18 IM1 400 B 1 
HETATM 19 C C19 IM1 . . . C 2 -8.96 16.898 27.865 1 19.31 ? C19 IM1 400 B 1 
HETATM 20 C C20 IM1 . . . C 2 -8.128 17.621 26.879 1 19.31 ? C20 IM1 400 B 1 
HETATM 21 C C21 IM1 . . . C 2 -6.763 17.895 27.582 1 19.31 ? C21 IM1 400 B 1 
HETATM 22 C C22 IM1 . . . C 2 -5.598 18.014 26.614 1 19.31 ? C22 IM1 400 B 1 
HETATM 23 C C23 IM1 . . . C 2 -4.691 16.951 26.5 1 19.31 ? C23 IM1 400 B 1 
HETATM 24 C C24 IM1 . . . C 2 -3.696 16.995 25.538 1 19.31 ? C24 IM1 400 B 1 
HETATM 25 C C25 IM1 . . . C 2 -3.602 18.094 24.695 1 19.31 ? C25 IM1 400 B 1 
HETATM 26 C C26 IM1 . . . C 2 -4.503 19.151 24.805 1 19.31 ? C26 IM1 400 B 1 
HETATM 27 C C27 IM1 . . . C 2 -5.506 19.121 25.761 1 19.31 ? C27 IM1 400 B 1 
HETATM 28 C C28 IM1 . . . C 2 -8.019 16.777 25.607 1 19.31 ? C28 IM1 400 B 1 
HETATM 29 O O29 IM1 . . . C 2 -7.748 15.582 25.66 1 19.31 ? O29 IM1 400 B 1 
HETATM 30 N N30 IM1 . . . C 2 -8.202 17.405 24.455 1 19.31 ? N30 IM1 400 B 1 
HETATM 31 C C31 IM1 . . . C 2 -8.105 16.703 23.18 1 19.31 ? C31 IM1 400 B 1 
HETATM 32 C C32 IM1 . . . C 2 -9.446 16.683 22.422 1 19.31 ? C32 IM1 400 B 1 
HETATM 33 C C34 IM1 . . . C 2 -10.512 15.966 23.226 1 19.31 ? C34 IM1 400 B 1 
HETATM 34 C C35 IM1 . . . C 2 -7.061 17.491 22.388 1 19.31 ? C35 IM1 400 B 1 
HETATM 35 N N36 IM1 . . . C 2 -6.122 16.84 21.746 1 19.31 ? N36 IM1 400 B 1 
HETATM 36 C C37 IM1 . . . C 2 -5.296 17.792 21.195 1 19.31 ? C37 IM1 400 B 1 
HETATM 37 C C38 IM1 . . . C 2 -5.843 19.015 21.568 1 19.31 ? C38 IM1 400 B 1 
HETATM 38 N N39 IM1 . . . C 2 -6.982 18.804 22.328 1 19.31 ? N39 IM1 400 B 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           335 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           38 
#