data_1BDU # _model_server_result.job_id WyX7_i1OJNIDaga25UsVBg _model_server_result.datetime_utc '2024-11-24 17:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bdu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":603}' # _entry.id 1BDU # _exptl.entry_id 1BDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BDU _cell.length_a 133.05 _cell.length_b 133.05 _cell.length_c 133.05 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 16_555 x,-y,-z+1/2 1 0 0 0 -1 0 0 0 -1 0 0 66.525 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A O2 FMT 1 A FMT 0 1_555 A N MET 2 A MET 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BDU _atom_sites.fract_transf_matrix[1][1] 0.007516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007516 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 603 603 PO4 PO4 . C 3 DUR A 1 301 301 DUR DUR . D 4 HOH A 1 750 750 HOH HOH . D 4 HOH A 2 751 751 HOH HOH . D 4 HOH A 3 752 752 HOH HOH . D 4 HOH A 4 753 753 HOH HOH . D 4 HOH A 5 754 754 HOH HOH . D 4 HOH A 6 755 755 HOH HOH . D 4 HOH A 7 756 756 HOH HOH . D 4 HOH A 8 758 758 HOH HOH . D 4 HOH A 9 759 759 HOH HOH . D 4 HOH A 10 760 760 HOH HOH . D 4 HOH A 11 761 761 HOH HOH . D 4 HOH A 12 762 762 HOH HOH . D 4 HOH A 13 763 763 HOH HOH . D 4 HOH A 14 764 764 HOH HOH . D 4 HOH A 15 765 765 HOH HOH . D 4 HOH A 16 766 766 HOH HOH . D 4 HOH A 17 767 767 HOH HOH . D 4 HOH A 18 768 768 HOH HOH . D 4 HOH A 19 769 769 HOH HOH . D 4 HOH A 20 770 770 HOH HOH . D 4 HOH A 21 771 771 HOH HOH . D 4 HOH A 22 772 772 HOH HOH . D 4 HOH A 23 773 773 HOH HOH . D 4 HOH A 24 774 774 HOH HOH . D 4 HOH A 25 775 775 HOH HOH . D 4 HOH A 26 776 776 HOH HOH . D 4 HOH A 27 777 777 HOH HOH . D 4 HOH A 28 778 778 HOH HOH . D 4 HOH A 29 779 779 HOH HOH . D 4 HOH A 30 780 780 HOH HOH . D 4 HOH A 31 781 781 HOH HOH . D 4 HOH A 32 782 782 HOH HOH . D 4 HOH A 33 783 783 HOH HOH . D 4 HOH A 34 784 784 HOH HOH . D 4 HOH A 35 785 785 HOH HOH . D 4 HOH A 36 786 786 HOH HOH . D 4 HOH A 37 787 787 HOH HOH . D 4 HOH A 38 788 788 HOH HOH . D 4 HOH A 39 789 789 HOH HOH . D 4 HOH A 40 790 790 HOH HOH . D 4 HOH A 41 791 791 HOH HOH . D 4 HOH A 42 792 792 HOH HOH . D 4 HOH A 43 793 793 HOH HOH . D 4 HOH A 44 794 794 HOH HOH . D 4 HOH A 45 795 795 HOH HOH . D 4 HOH A 46 796 796 HOH HOH . D 4 HOH A 47 797 797 HOH HOH . D 4 HOH A 48 798 798 HOH HOH . D 4 HOH A 49 799 799 HOH HOH . D 4 HOH A 50 800 800 HOH HOH . D 4 HOH A 51 801 801 HOH HOH . D 4 HOH A 52 802 802 HOH HOH . D 4 HOH A 53 803 803 HOH HOH . D 4 HOH A 54 804 804 HOH HOH . D 4 HOH A 55 805 805 HOH HOH . D 4 HOH A 56 806 806 HOH HOH . D 4 HOH A 57 807 807 HOH HOH . D 4 HOH A 58 808 808 HOH HOH . D 4 HOH A 59 809 809 HOH HOH . D 4 HOH A 60 810 810 HOH HOH . D 4 HOH A 61 811 811 HOH HOH . D 4 HOH A 62 812 812 HOH HOH . D 4 HOH A 63 813 813 HOH HOH . D 4 HOH A 64 816 816 HOH HOH . D 4 HOH A 65 817 817 HOH HOH . D 4 HOH A 66 818 818 HOH HOH . D 4 HOH A 67 819 819 HOH HOH . D 4 HOH A 68 820 820 HOH HOH . D 4 HOH A 69 821 821 HOH HOH . D 4 HOH A 70 822 822 HOH HOH . D 4 HOH A 71 823 823 HOH HOH . D 4 HOH A 72 824 824 HOH HOH . D 4 HOH A 73 825 825 HOH HOH . D 4 HOH A 74 826 826 HOH HOH . D 4 HOH A 75 827 827 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . B 2 -32.024 -13.668 24.514 1 14.21 ? P PO4 603 A 1 HETATM 2 O O1 PO4 . . . B 2 -33.003 -12.891 23.591 1 42.08 ? O1 PO4 603 A 1 HETATM 3 O O2 PO4 . . . B 2 -31.736 -14.919 23.812 1 41.74 ? O2 PO4 603 A 1 HETATM 4 O O3 PO4 . . . B 2 -32.805 -13.85 25.741 1 28.69 ? O3 PO4 603 A 1 HETATM 5 O O4 PO4 . . . B 2 -30.905 -12.743 24.624 1 28.91 ? O4 PO4 603 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 1027 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 5 #