data_1BDW # _model_server_result.job_id p755r3jWVGBmQLVPAp67EQ _model_server_result.datetime_utc '2024-10-16 16:22:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bdw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":203}' # _entry.id 1BDW # _exptl.entry_id 1BDW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 60.052 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BDW _cell.length_a 20.584 _cell.length_b 27.905 _cell.length_c 52.04 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BDW _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FVA 1 A FVA 1 1_555 A N GLY 2 A GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C ALA 3 A ALA 3 1_555 A N DLE 4 A DLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale3 A C DLE 4 A DLE 4 1_555 A N ALA 5 A ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale4 A C ALA 5 A ALA 5 1_555 A N DVA 6 A DVA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale5 A C DVA 6 A DVA 6 1_555 A N VAL 7 A VAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale6 A C VAL 7 A VAL 7 1_555 A N DVA 8 A DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C DVA 8 A DVA 8 1_555 A N TRP 9 A TRP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale8 A C TRP 9 A TRP 9 1_555 A N DLE 10 A DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale9 A C DLE 10 A DLE 10 1_555 A N TRP 11 A TRP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 ? covale ? covale10 A C TRP 11 A TRP 11 1_555 A N DLE 12 A DLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C DLE 12 A DLE 12 1_555 A N TRP 13 A TRP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale12 A C TRP 13 A TRP 13 1_555 A N DLE 14 A DLE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale13 A C DLE 14 A DLE 14 1_555 A N TRP 15 A TRP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale14 A C TRP 15 A TRP 15 1_555 A N ETA 16 A ETA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale15 B C FVA 1 B FVA 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 B C ALA 3 B ALA 3 1_555 B N DLE 4 B DLE 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale17 B C DLE 4 B DLE 4 1_555 B N ALA 5 B ALA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.308 ? covale ? covale18 B C ALA 5 B ALA 5 1_555 B N DVA 6 B DVA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale19 B C DVA 6 B DVA 6 1_555 B N VAL 7 B VAL 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 B C VAL 7 B VAL 7 1_555 B N DVA 8 B DVA 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale21 B C DVA 8 B DVA 8 1_555 B N TRP 9 B TRP 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale22 B C TRP 9 B TRP 9 1_555 B N DLE 10 B DLE 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale23 B C DLE 10 B DLE 10 1_555 B N TRP 11 B TRP 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale24 B C TRP 11 B TRP 11 1_555 B N DLE 12 B DLE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale25 B C DLE 12 B DLE 12 1_555 B N TRP 13 B TRP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? covale ? covale26 B C TRP 13 B TRP 13 1_555 B N DLE 14 B DLE 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? covale ? covale27 B C DLE 14 B DLE 14 1_555 B N TRP 15 B TRP 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale28 B C TRP 15 B TRP 15 1_555 B N ETA 16 B ETA 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? # _chem_comp.formula 'C2 H4 O2' _chem_comp.formula_weight 60.052 _chem_comp.id ACY _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACY doub 1 n n C OXT ACY sing 2 n n C CH3 ACY sing 3 n n OXT HXT ACY sing 4 n n CH3 H1 ACY sing 5 n n CH3 H2 ACY sing 6 n n CH3 H3 ACY sing 7 n n # _atom_sites.entry_id 1BDW _atom_sites.fract_transf_matrix[1][1] 0.048581 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035836 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019216 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACY A 1 201 201 ACY ACY . D 2 ACY A 1 205 205 ACY ACY . E 2 ACY B 1 202 202 ACY ACY . F 2 ACY B 1 203 203 ACY ACY . G 2 ACY B 1 206 206 ACY ACY . H 3 HOH A 1 2001 2001 HOH HOH . H 3 HOH A 2 2002 2002 HOH HOH . H 3 HOH A 3 2003 2003 HOH HOH . H 3 HOH A 4 2004 2004 HOH HOH . H 3 HOH A 5 2005 2005 HOH HOH . H 3 HOH A 6 2006 2006 HOH HOH . H 3 HOH A 7 2007 2007 HOH HOH . H 3 HOH A 8 2008 2008 HOH HOH . H 3 HOH A 9 2009 2009 HOH HOH . H 3 HOH A 10 2010 2010 HOH HOH . H 3 HOH A 11 2011 2011 HOH HOH . H 3 HOH A 12 2012 2012 HOH HOH . H 3 HOH A 13 2013 2013 HOH HOH . I 3 HOH B 1 2001 2001 HOH HOH . I 3 HOH B 2 2002 2002 HOH HOH . I 3 HOH B 3 2003 2003 HOH HOH . I 3 HOH B 4 2004 2004 HOH HOH . I 3 HOH B 5 2005 2005 HOH HOH . I 3 HOH B 6 2006 2006 HOH HOH . I 3 HOH B 7 2007 2007 HOH HOH . I 3 HOH B 8 2008 2008 HOH HOH . I 3 HOH B 9 2009 2009 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACY . A . F 2 3.709 -12.094 2.058 0.5 31.17 ? C ACY 203 B 1 HETATM 2 C C ACY . B . F 2 2.363 -11.043 4.344 0.5 38.64 ? C ACY 203 B 1 HETATM 3 O O ACY . A . F 2 3.327 -12.348 3.246 0.5 35.73 ? O ACY 203 B 1 HETATM 4 O O ACY . B . F 2 2.587 -10.112 5.181 0.5 39.4 ? O ACY 203 B 1 HETATM 5 O OXT ACY . A . F 2 3.263 -11.104 1.401 0.5 28.45 ? OXT ACY 203 B 1 HETATM 6 O OXT ACY . B . F 2 1.832 -12.145 4.698 0.5 45.27 ? OXT ACY 203 B 1 HETATM 7 C CH3 ACY . A . F 2 4.713 -13.011 1.44 0.5 28.2 ? CH3 ACY 203 B 1 HETATM 8 C CH3 ACY . B . F 2 2.733 -10.838 2.906 0.5 31.28 ? CH3 ACY 203 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 1 _model_server_stats.query_time_ms 254 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 8 #