data_1BE3 # _model_server_result.job_id TwbSWvWWEJTcr_SAROC8Pw _model_server_result.datetime_utc '2024-11-05 16:22:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1be3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":242}' # _entry.id 1BE3 # _exptl.entry_id 1BE3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BE3 _cell.length_a 211.2 _cell.length_b 211.2 _cell.length_c 339.28 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BE3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 65 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA undecameric 11 author_and_software_defined_assembly 1 PISA 22-meric 22 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 105.6 182.904565 56.546667 # _struct_asym.details ? _struct_asym.entity_id 13 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? covale ? covale1 D SG CYS 37 D CYS 37 1_555 N CAB HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? covale ? covale2 D SG CYS 40 D CYS 40 1_555 N CAC HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 L FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 M FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 L FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 M FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 N FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc6 D SD MET 160 D MET 160 1_555 N FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 O FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 O FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 O FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 O FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 133 n n FE NB HEC sing 134 n n FE NC HEC sing 135 n n FE ND HEC sing 136 n n CHA C1A HEC doub 137 n n CHA C4D HEC sing 138 n n CHA HHA HEC sing 139 n n CHB C4A HEC doub 140 n n CHB C1B HEC sing 141 n n CHB HHB HEC sing 142 n n CHC C4B HEC doub 143 n n CHC C1C HEC sing 144 n n CHC HHC HEC sing 145 n n CHD C4C HEC doub 146 n n CHD C1D HEC sing 147 n n CHD HHD HEC sing 148 n n NA C1A HEC sing 149 n y NA C4A HEC sing 150 n y C1A C2A HEC sing 151 n y C2A C3A HEC doub 152 n y C2A CAA HEC sing 153 n n C3A C4A HEC sing 154 n y C3A CMA HEC sing 155 n n CMA HMA1 HEC sing 156 n n CMA HMA2 HEC sing 157 n n CMA HMA3 HEC sing 158 n n CAA CBA HEC sing 159 n n CAA HAA1 HEC sing 160 n n CAA HAA2 HEC sing 161 n n CBA CGA HEC sing 162 n n CBA HBA1 HEC sing 163 n n CBA HBA2 HEC sing 164 n n CGA O1A HEC doub 165 n n CGA O2A HEC sing 166 n n O2A H2A HEC sing 167 n n NB C1B HEC sing 168 n y NB C4B HEC sing 169 n y C1B C2B HEC doub 170 n y C2B C3B HEC sing 171 n y C2B CMB HEC sing 172 n n C3B C4B HEC sing 173 n y C3B CAB HEC doub 174 e n CMB HMB1 HEC sing 175 n n CMB HMB2 HEC sing 176 n n CMB HMB3 HEC sing 177 n n CAB CBB HEC sing 178 n n CAB HAB HEC sing 179 n n CBB HBB1 HEC sing 180 n n CBB HBB2 HEC sing 181 n n CBB HBB3 HEC sing 182 n n NC C1C HEC sing 183 n y NC C4C HEC sing 184 n y C1C C2C HEC doub 185 n y C2C C3C HEC sing 186 n y C2C CMC HEC sing 187 n n C3C C4C HEC sing 188 n y C3C CAC HEC doub 189 e n CMC HMC1 HEC sing 190 n n CMC HMC2 HEC sing 191 n n CMC HMC3 HEC sing 192 n n CAC CBC HEC sing 193 n n CAC HAC HEC sing 194 n n CBC HBC1 HEC sing 195 n n CBC HBC2 HEC sing 196 n n CBC HBC3 HEC sing 197 n n ND C1D HEC sing 198 n y ND C4D HEC sing 199 n y C1D C2D HEC doub 200 n y C2D C3D HEC sing 201 n y C2D CMD HEC sing 202 n n C3D C4D HEC doub 203 n y C3D CAD HEC sing 204 n n CMD HMD1 HEC sing 205 n n CMD HMD2 HEC sing 206 n n CMD HMD3 HEC sing 207 n n CAD CBD HEC sing 208 n n CAD HAD1 HEC sing 209 n n CAD HAD2 HEC sing 210 n n CBD CGD HEC sing 211 n n CBD HBD1 HEC sing 212 n n CBD HBD2 HEC sing 213 n n CGD O1D HEC doub 214 n n CGD O2D HEC sing 215 n n O2D H2D HEC sing 216 n n # _atom_sites.entry_id 1BE3 _atom_sites.fract_transf_matrix[1][1] 0.004735 _atom_sites.fract_transf_matrix[1][2] 0.002734 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005467 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code L 12 HEM C 1 380 1 HEM HEM . M 12 HEM C 1 381 2 HEM HEM . N 13 HEC D 1 242 3 HEC HEC . O 14 FES E 1 197 4 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . N 13 86.754 100.165 38.77 1 44.41 ? FE HEC 242 D 1 HETATM 2 C CHA HEC . . . N 13 84.888 100.021 41.588 1 51.15 ? CHA HEC 242 D 1 HETATM 3 C CHB HEC . . . N 13 84.878 102.816 37.659 1 44.62 ? CHB HEC 242 D 1 HETATM 4 C CHC HEC . . . N 13 88.956 100.651 36.241 1 45.08 ? CHC HEC 242 D 1 HETATM 5 C CHD HEC . . . N 13 88.314 97.257 39.64 1 44.98 ? CHD HEC 242 D 1 HETATM 6 N NA HEC . . . N 13 85.119 101.144 39.433 1 45.9 ? NA HEC 242 D 1 HETATM 7 C C1A HEC . . . N 13 84.624 101.068 40.724 1 48.68 ? C1A HEC 242 D 1 HETATM 8 C C2A HEC . . . N 13 83.818 102.233 41.006 1 49.13 ? C2A HEC 242 D 1 HETATM 9 C C3A HEC . . . N 13 83.819 102.997 39.913 1 47.63 ? C3A HEC 242 D 1 HETATM 10 C C4A HEC . . . N 13 84.625 102.334 38.921 1 45.78 ? C4A HEC 242 D 1 HETATM 11 C CMA HEC . . . N 13 83.102 104.349 39.719 1 51.28 ? CMA HEC 242 D 1 HETATM 12 C CAA HEC . . . N 13 83.106 102.522 42.338 1 47.12 ? CAA HEC 242 D 1 HETATM 13 C CBA HEC . . . N 13 81.606 102.753 42.323 1 48.39 ? CBA HEC 242 D 1 HETATM 14 C CGA HEC . . . N 13 80.968 102.2 43.587 1 50.48 ? CGA HEC 242 D 1 HETATM 15 O O1A HEC . . . N 13 81.044 100.953 43.747 1 52.09 ? O1A HEC 242 D 1 HETATM 16 O O2A HEC . . . N 13 80.49 103.113 44.3 1 47.3 ? O2A HEC 242 D 1 HETATM 17 N NB HEC . . . N 13 86.899 101.466 37.256 1 41.93 ? NB HEC 242 D 1 HETATM 18 C C1B HEC . . . N 13 86.025 102.496 36.956 1 43.22 ? C1B HEC 242 D 1 HETATM 19 C C2B HEC . . . N 13 86.501 103.191 35.777 1 41.46 ? C2B HEC 242 D 1 HETATM 20 C C3B HEC . . . N 13 87.623 102.599 35.386 1 39.44 ? C3B HEC 242 D 1 HETATM 21 C C4B HEC . . . N 13 87.887 101.512 36.298 1 39.94 ? C4B HEC 242 D 1 HETATM 22 C CMB HEC . . . N 13 85.767 104.395 35.153 1 43.58 ? CMB HEC 242 D 1 HETATM 23 C CAB HEC . . . N 13 88.557 102.904 34.182 1 34.59 ? CAB HEC 242 D 1 HETATM 24 C CBB HEC . . . N 13 89.147 104.104 34.095 1 30.02 ? CBB HEC 242 D 1 HETATM 25 N NC HEC . . . N 13 88.345 99.179 38.117 1 43.5 ? NC HEC 242 D 1 HETATM 26 C C1C HEC . . . N 13 89.077 99.501 36.993 1 48.35 ? C1C HEC 242 D 1 HETATM 27 C C2C HEC . . . N 13 90.007 98.421 36.721 1 48.78 ? C2C HEC 242 D 1 HETATM 28 C C3C HEC . . . N 13 89.826 97.495 37.664 1 44.81 ? C3C HEC 242 D 1 HETATM 29 C C4C HEC . . . N 13 88.782 97.939 38.546 1 43.82 ? C4C HEC 242 D 1 HETATM 30 C CMC HEC . . . N 13 90.997 98.427 35.534 1 50.6 ? CMC HEC 242 D 1 HETATM 31 C CAC HEC . . . N 13 90.598 96.154 37.768 1 40.27 ? CAC HEC 242 D 1 HETATM 32 C CBC HEC . . . N 13 91.698 96.176 38.556 1 40.44 ? CBC HEC 242 D 1 HETATM 33 N ND HEC . . . N 13 86.659 98.913 40.344 1 48.22 ? ND HEC 242 D 1 HETATM 34 C C1D HEC . . . N 13 87.318 97.7 40.476 1 47.38 ? C1D HEC 242 D 1 HETATM 35 C C2D HEC . . . N 13 86.784 96.98 41.615 1 47.74 ? C2D HEC 242 D 1 HETATM 36 C C3D HEC . . . N 13 85.831 97.739 42.169 1 50.53 ? C3D HEC 242 D 1 HETATM 37 C C4D HEC . . . N 13 85.741 98.956 41.381 1 50.67 ? C4D HEC 242 D 1 HETATM 38 C CMD HEC . . . N 13 87.291 95.59 42.039 1 46.92 ? CMD HEC 242 D 1 HETATM 39 C CAD HEC . . . N 13 84.953 97.443 43.41 1 49.67 ? CAD HEC 242 D 1 HETATM 40 C CBD HEC . . . N 13 85.064 98.36 44.618 1 50.83 ? CBD HEC 242 D 1 HETATM 41 C CGD HEC . . . N 13 84.422 97.953 45.911 1 53.23 ? CGD HEC 242 D 1 HETATM 42 O O1D HEC . . . N 13 84.902 98.456 46.97 1 50.52 ? O1D HEC 242 D 1 HETATM 43 O O2D HEC . . . N 13 83.442 97.146 45.881 1 56.53 ? O2D HEC 242 D 1 # _model_server_stats.io_time_ms 72 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 43 #