data_1BE3
#
_model_server_result.job_id            TihNiD3CvM8xR0Q2XtqpxA 
_model_server_result.datetime_utc      '2024-11-05 16:26:45' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1be3 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":381}' 
#
_entry.id    1BE3 
#
_exptl.entry_id    1BE3 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          12 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BE3 
_cell.length_a            211.2 
_cell.length_b            211.2 
_cell.length_c            339.28 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BE3 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA undecameric 11 author_and_software_defined_assembly 1 
PISA 22-meric 22 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 105.6 182.904565 56.546667 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 12 L N N 
? 12 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 E SG CYS 144 E CYS 144 1_555 E SG CYS 160 E CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.01 ? 
disulf ? disulf2 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? 
disulf ? disulf3 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 N CAB HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.844 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 N CAC HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? 
metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 L FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 M FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 L FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 M FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 N FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 N FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? 
metalc ? metalc7 E SG CYS 139 E CYS 139 1_555 O FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc8 E ND1 HIS 141 E HIS 141 1_555 O FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? 
metalc ? metalc9 E SG CYS 158 E CYS 158 1_555 O FE1 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.25 ? 
metalc ? metalc10 E ND1 HIS 161 E HIS 161 1_555 O FE2 FES . E FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 217 n n 
CHA C4D HEM doub 218 n n 
CHA HHA HEM sing 219 n n 
CHB C4A HEM sing 220 n n 
CHB C1B HEM doub 221 n n 
CHB HHB HEM sing 222 n n 
CHC C4B HEM sing 223 n n 
CHC C1C HEM doub 224 n n 
CHC HHC HEM sing 225 n n 
CHD C4C HEM doub 226 n n 
CHD C1D HEM sing 227 n n 
CHD HHD HEM sing 228 n n 
C1A C2A HEM doub 229 n y 
C1A NA HEM sing 230 n y 
C2A C3A HEM sing 231 n y 
C2A CAA HEM sing 232 n n 
C3A C4A HEM doub 233 n y 
C3A CMA HEM sing 234 n n 
C4A NA HEM sing 235 n y 
CMA HMA HEM sing 236 n n 
CMA HMAA HEM sing 237 n n 
CMA HMAB HEM sing 238 n n 
CAA CBA HEM sing 239 n n 
CAA HAA HEM sing 240 n n 
CAA HAAA HEM sing 241 n n 
CBA CGA HEM sing 242 n n 
CBA HBA HEM sing 243 n n 
CBA HBAA HEM sing 244 n n 
CGA O1A HEM doub 245 n n 
CGA O2A HEM sing 246 n n 
C1B C2B HEM sing 247 n n 
C1B NB HEM sing 248 n n 
C2B C3B HEM doub 249 n n 
C2B CMB HEM sing 250 n n 
C3B C4B HEM sing 251 n n 
C3B CAB HEM sing 252 n n 
C4B NB HEM doub 253 n n 
CMB HMB HEM sing 254 n n 
CMB HMBA HEM sing 255 n n 
CMB HMBB HEM sing 256 n n 
CAB CBB HEM doub 257 n n 
CAB HAB HEM sing 258 n n 
CBB HBB HEM sing 259 n n 
CBB HBBA HEM sing 260 n n 
C1C C2C HEM sing 261 n y 
C1C NC HEM sing 262 n y 
C2C C3C HEM doub 263 n y 
C2C CMC HEM sing 264 n n 
C3C C4C HEM sing 265 n y 
C3C CAC HEM sing 266 n n 
C4C NC HEM sing 267 n y 
CMC HMC HEM sing 268 n n 
CMC HMCA HEM sing 269 n n 
CMC HMCB HEM sing 270 n n 
CAC CBC HEM doub 271 n n 
CAC HAC HEM sing 272 n n 
CBC HBC HEM sing 273 n n 
CBC HBCA HEM sing 274 n n 
C1D C2D HEM sing 275 n n 
C1D ND HEM doub 276 n n 
C2D C3D HEM doub 277 n n 
C2D CMD HEM sing 278 n n 
C3D C4D HEM sing 279 n n 
C3D CAD HEM sing 280 n n 
C4D ND HEM sing 281 n n 
CMD HMD HEM sing 282 n n 
CMD HMDA HEM sing 283 n n 
CMD HMDB HEM sing 284 n n 
CAD CBD HEM sing 285 n n 
CAD HAD HEM sing 286 n n 
CAD HADA HEM sing 287 n n 
CBD CGD HEM sing 288 n n 
CBD HBD HEM sing 289 n n 
CBD HBDA HEM sing 290 n n 
CGD O1D HEM doub 291 n n 
CGD O2D HEM sing 292 n n 
O2A H2A HEM sing 293 n n 
O2D H2D HEM sing 294 n n 
FE NA HEM sing 295 n n 
FE NB HEM sing 296 n n 
FE NC HEM sing 297 n n 
FE ND HEM sing 298 n n 
#
_atom_sites.entry_id                     1BE3 
_atom_sites.fract_transf_matrix[1][1]    0.004735 
_atom_sites.fract_transf_matrix[1][2]    0.002734 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.002947 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 12 HEM C 1 380 1 HEM HEM . 
M 12 HEM C 1 381 2 HEM HEM . 
N 13 HEC D 1 242 3 HEC HEC . 
O 14 FES E 1 197 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . M 12 36.463 117.539 37.866 1 3.3 ? CHA HEM 381 C 1 
HETATM 2 C CHB HEM . . . M 12 38.956 114.281 35.306 1 9.33 ? CHB HEM 381 C 1 
HETATM 3 C CHC HEM . . . M 12 40.89 112.684 39.413 1 5.23 ? CHC HEM 381 C 1 
HETATM 4 C CHD HEM . . . M 12 37.578 115.176 41.899 1 6.14 ? CHD HEM 381 C 1 
HETATM 5 C C1A HEM . . . M 12 37.039 116.908 36.77 1 11.6 ? C1A HEM 381 C 1 
HETATM 6 C C2A HEM . . . M 12 37.038 117.28 35.367 1 2.2 ? C2A HEM 381 C 1 
HETATM 7 C C3A HEM . . . M 12 37.693 116.356 34.681 1 4.88 ? C3A HEM 381 C 1 
HETATM 8 C C4A HEM . . . M 12 38.19 115.389 35.632 1 9.53 ? C4A HEM 381 C 1 
HETATM 9 C CMA HEM . . . M 12 37.949 116.282 33.172 1 6.5 ? CMA HEM 381 C 1 
HETATM 10 C CAA HEM . . . M 12 36.28 118.488 34.788 1 12.21 ? CAA HEM 381 C 1 
HETATM 11 C CBA HEM . . . M 12 37.2 119.733 34.792 1 16.91 ? CBA HEM 381 C 1 
HETATM 12 C CGA HEM . . . M 12 37.557 120.119 36.211 1 16.14 ? CGA HEM 381 C 1 
HETATM 13 O O1A HEM . . . M 12 38.752 120.357 36.455 1 17.75 ? O1A HEM 381 C 1 
HETATM 14 O O2A HEM . . . M 12 36.608 120.14 37.03 1 20.96 ? O2A HEM 381 C 1 
HETATM 15 C C1B HEM . . . M 12 39.692 113.538 36.2 1 7.39 ? C1B HEM 381 C 1 
HETATM 16 C C2B HEM . . . M 12 40.558 112.416 35.895 1 4.6 ? C2B HEM 381 C 1 
HETATM 17 C C3B HEM . . . M 12 41.081 111.978 37.024 1 6.5 ? C3B HEM 381 C 1 
HETATM 18 C C4B HEM . . . M 12 40.557 112.824 38.092 1 9.26 ? C4B HEM 381 C 1 
HETATM 19 C CMB HEM . . . M 12 40.812 111.844 34.492 1 3.95 ? CMB HEM 381 C 1 
HETATM 20 C CAB HEM . . . M 12 42.064 110.826 37.28 1 6.48 ? CAB HEM 381 C 1 
HETATM 21 C CBB HEM . . . M 12 42.141 109.79 36.469 1 5.14 ? CBB HEM 381 C 1 
HETATM 22 C C1C HEM . . . M 12 40.168 113.233 40.409 1 5.05 ? C1C HEM 381 C 1 
HETATM 23 C C2C HEM . . . M 12 40.431 113.036 41.821 1 4.84 ? C2C HEM 381 C 1 
HETATM 24 C C3C HEM . . . M 12 39.506 113.729 42.483 1 4.4 ? C3C HEM 381 C 1 
HETATM 25 C C4C HEM . . . M 12 38.625 114.385 41.55 1 5.45 ? C4C HEM 381 C 1 
HETATM 26 C CMC HEM . . . M 12 41.576 112.184 42.396 1 2.46 ? CMC HEM 381 C 1 
HETATM 27 C CAC HEM . . . M 12 39.335 113.858 43.99 1 3.4 ? CAC HEM 381 C 1 
HETATM 28 C CBC HEM . . . M 12 39.839 112.886 44.69 1 2.2 ? CBC HEM 381 C 1 
HETATM 29 C C1D HEM . . . M 12 37.004 116.049 41.041 1 6.37 ? C1D HEM 381 C 1 
HETATM 30 C C2D HEM . . . M 12 36.015 117.032 41.415 1 5.17 ? C2D HEM 381 C 1 
HETATM 31 C C3D HEM . . . M 12 35.717 117.663 40.277 1 2.2 ? C3D HEM 381 C 1 
HETATM 32 C C4D HEM . . . M 12 36.478 117.164 39.174 1 5.53 ? C4D HEM 381 C 1 
HETATM 33 C CMD HEM . . . M 12 35.463 117.253 42.828 1 6.48 ? CMD HEM 381 C 1 
HETATM 34 C CAD HEM . . . M 12 34.727 118.821 40.086 1 3.67 ? CAD HEM 381 C 1 
HETATM 35 C CBD HEM . . . M 12 34.972 120.132 40.815 1 4.19 ? CBD HEM 381 C 1 
HETATM 36 C CGD HEM . . . M 12 34.189 121.243 40.154 1 2.2 ? CGD HEM 381 C 1 
HETATM 37 O O1D HEM . . . M 12 34.558 121.47 38.98 1 9.16 ? O1D HEM 381 C 1 
HETATM 38 O O2D HEM . . . M 12 33.287 121.767 40.843 1 12.67 ? O2D HEM 381 C 1 
HETATM 39 N NA HEM . . . M 12 37.784 115.736 36.913 1 10.1 ? NA HEM 381 C 1 
HETATM 40 N NB HEM . . . M 12 39.699 113.78 37.569 1 9.67 ? NB HEM 381 C 1 
HETATM 41 N NC HEM . . . M 12 39.059 114.065 40.28 1 2.25 ? NC HEM 381 C 1 
HETATM 42 N ND HEM . . . M 12 37.267 116.137 39.676 1 4.17 ? ND HEM 381 C 1 
HETATM 43 FE FE HEM . . . M 12 38.357 114.858 38.612 1 7.31 ? FE HEM 381 C 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    32 
_model_server_stats.query_time_ms           318 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#