data_1BE6 # _model_server_result.job_id 2q-Zny_3DQodLS3-oWwrwQ _model_server_result.datetime_utc '2024-11-08 12:59:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1be6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":358}' # _entry.id 1BE6 # _exptl.entry_id 1BE6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 41.052 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ACETONITRILE _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BE6 _cell.length_a 76.409 _cell.length_b 55.261 _cell.length_c 52.824 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BE6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 K N N ? 4 L N N ? 4 M N N ? 4 N N N ? 4 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 220 A SER 221 1_555 C C1 TCA . A TCA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale2 C C1 TCA . A TCA 276 1_555 O N CCN . A CCN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.95 ? covale ? covale3 C O TCA . A TCA 276 1_555 O N CCN . A CCN 363 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc2 A OD2 ASP 41 A ASP 41 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc3 A OD1 ASP 41 A ASP 41 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.62 ? metalc ? metalc4 A O LEU 74 A LEU 75 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.425 ? metalc ? metalc5 A OD1 ASN 76 A ASN 77 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.303 ? metalc ? metalc6 A O THR 78 A THR 79 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc7 A O VAL 80 A VAL 81 1_555 B CA CA . A CA 277 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? # _chem_comp.formula 'C2 H3 N' _chem_comp.formula_weight 41.052 _chem_comp.id CCN _chem_comp.mon_nstd_flag . _chem_comp.name ACETONITRILE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N C1 CCN trip 70 n n C1 C2 CCN sing 71 n n C2 H21 CCN sing 72 n n C2 H22 CCN sing 73 n n C2 H23 CCN sing 74 n n # _atom_sites.entry_id 1BE6 _atom_sites.fract_transf_matrix[1][1] 0.013087 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018096 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018931 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 277 277 CA CA . C 3 TCA A 1 276 276 TCA TCA . D 4 CCN A 1 352 352 CCN CCN . E 4 CCN A 1 353 353 CCN CCN . F 4 CCN A 1 354 354 CCN CCN . G 4 CCN A 1 355 355 CCN CCN . H 4 CCN A 1 356 356 CCN CCN . I 4 CCN A 1 357 357 CCN CCN . J 4 CCN A 1 358 358 CCN CCN . K 4 CCN A 1 359 359 CCN CCN . L 4 CCN A 1 360 360 CCN CCN . M 4 CCN A 1 361 361 CCN CCN . N 4 CCN A 1 362 362 CCN CCN . O 4 CCN A 1 363 363 CCN CCN . P 5 HOH A 1 278 278 HOH HOH . P 5 HOH A 2 279 279 HOH HOH . P 5 HOH A 3 280 280 HOH HOH . P 5 HOH A 4 281 281 HOH HOH . P 5 HOH A 5 282 282 HOH HOH . P 5 HOH A 6 283 283 HOH HOH . P 5 HOH A 7 284 284 HOH HOH . P 5 HOH A 8 285 285 HOH HOH . P 5 HOH A 9 286 286 HOH HOH . P 5 HOH A 10 287 287 HOH HOH . P 5 HOH A 11 288 288 HOH HOH . P 5 HOH A 12 289 289 HOH HOH . P 5 HOH A 13 290 290 HOH HOH . P 5 HOH A 14 291 291 HOH HOH . P 5 HOH A 15 292 292 HOH HOH . P 5 HOH A 16 294 294 HOH HOH . P 5 HOH A 17 295 295 HOH HOH . P 5 HOH A 18 296 296 HOH HOH . P 5 HOH A 19 297 297 HOH HOH . P 5 HOH A 20 298 298 HOH HOH . P 5 HOH A 21 299 299 HOH HOH . P 5 HOH A 22 300 300 HOH HOH . P 5 HOH A 23 301 301 HOH HOH . P 5 HOH A 24 302 302 HOH HOH . P 5 HOH A 25 303 303 HOH HOH . P 5 HOH A 26 304 304 HOH HOH . P 5 HOH A 27 305 305 HOH HOH . P 5 HOH A 28 306 306 HOH HOH . P 5 HOH A 29 307 307 HOH HOH . P 5 HOH A 30 308 308 HOH HOH . P 5 HOH A 31 309 309 HOH HOH . P 5 HOH A 32 310 310 HOH HOH . P 5 HOH A 33 311 311 HOH HOH . P 5 HOH A 34 312 312 HOH HOH . P 5 HOH A 35 313 313 HOH HOH . P 5 HOH A 36 314 314 HOH HOH . P 5 HOH A 37 315 315 HOH HOH . P 5 HOH A 38 316 316 HOH HOH . P 5 HOH A 39 317 317 HOH HOH . P 5 HOH A 40 318 318 HOH HOH . P 5 HOH A 41 319 319 HOH HOH . P 5 HOH A 42 320 320 HOH HOH . P 5 HOH A 43 321 321 HOH HOH . P 5 HOH A 44 322 322 HOH HOH . P 5 HOH A 45 323 323 HOH HOH . P 5 HOH A 46 324 324 HOH HOH . P 5 HOH A 47 325 325 HOH HOH . P 5 HOH A 48 326 326 HOH HOH . P 5 HOH A 49 327 327 HOH HOH . P 5 HOH A 50 328 328 HOH HOH . P 5 HOH A 51 329 329 HOH HOH . P 5 HOH A 52 330 330 HOH HOH . P 5 HOH A 53 331 331 HOH HOH . P 5 HOH A 54 332 332 HOH HOH . P 5 HOH A 55 333 333 HOH HOH . P 5 HOH A 56 334 334 HOH HOH . P 5 HOH A 57 335 335 HOH HOH . P 5 HOH A 58 336 336 HOH HOH . P 5 HOH A 59 337 337 HOH HOH . P 5 HOH A 60 338 338 HOH HOH . P 5 HOH A 61 339 339 HOH HOH . P 5 HOH A 62 340 340 HOH HOH . P 5 HOH A 63 341 341 HOH HOH . P 5 HOH A 64 342 342 HOH HOH . P 5 HOH A 65 343 343 HOH HOH . P 5 HOH A 66 344 344 HOH HOH . P 5 HOH A 67 345 345 HOH HOH . P 5 HOH A 68 346 346 HOH HOH . P 5 HOH A 69 347 347 HOH HOH . P 5 HOH A 70 348 348 HOH HOH . P 5 HOH A 71 349 349 HOH HOH . P 5 HOH A 72 350 350 HOH HOH . P 5 HOH A 73 351 351 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N CCN . . . J 4 -1.305 28.099 21.233 1 48.59 ? N CCN 358 A 1 HETATM 2 C C1 CCN . . . J 4 -1.942 27.874 22.186 1 48.96 ? C1 CCN 358 A 1 HETATM 3 C C2 CCN . . . J 4 -2.82 27.582 23.3 1 47.07 ? C2 CCN 358 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 223 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 3 #