data_1BEN # _model_server_result.job_id Wc2efbvObbi579gXIa1o2A _model_server_result.datetime_utc '2024-10-18 16:23:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ben # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":31}' # _entry.id 1BEN # _exptl.entry_id 1BEN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BEN _cell.length_a 80.72 _cell.length_b 80.72 _cell.length_c 37.63 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BEN _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'H 3' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dodecameric 12 software_defined_assembly 3 PISA dodecameric 12 software_defined_assembly 4 PISA dodecameric 12 software_defined_assembly 5 PISA nonameric 9 software_defined_assembly 6 PISA hexameric 6 software_defined_assembly 7 PISA hexameric 6 software_defined_assembly 8 PISA nonameric 9 software_defined_assembly 9 PISA nonameric 9 software_defined_assembly 10 PISA nonameric 9 software_defined_assembly 11 PISA nonameric 9 software_defined_assembly 12 PISA hexameric 6 software_defined_assembly 13 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,J,K 1 1 C,D,F,G,H,I,L,M 2 1 A,B,C,D,E,F,G,H,I,J,K,L,M 3 1,2,3 C,D,F,G,H,I,L,M 4 1,2,3 A,B,E,J,K 4 4,5,6 D,G,H,I,M 5 7,8,9 A,B,C,E,F,J,K,L 5 1,2,3 A,B,C,E,F,J,K,L 6 1,2,3 C,D,F,G,H,I,L,M 7 1,2,3 A,B,E,J,K 8 1,2,3 B,C,D,E,F,G,H,I,K,L,M 9 1,2,3 A,B,D,E,G,H,I,J,K,M 10 1,2,3 D,G,H,I,M 11 7,8,9 A,B,E,J,K 11 1,2,3 B,E,K 12 4,5,6 C,D,F,G,H,I,L,M 12 1,2,3 B,D,E,G,H,I,K,M 13 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 4 'crystal symmetry operation' 1_556 x,y,z+1 1 0 0 0 1 0 0 0 1 0 0 37.63 5 'crystal symmetry operation' 2_556 -y,x-y,z+1 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 37.63 6 'crystal symmetry operation' 3_556 -x+y,-x,z+1 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 37.63 7 'crystal symmetry operation' 1_554 x,y,z-1 1 0 0 0 1 0 0 0 1 0 0 -37.63 8 'crystal symmetry operation' 2_554 -y,x-y,z-1 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 -37.63 9 'crystal symmetry operation' 3_554 -x+y,-x,z-1 -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 -37.63 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? 1 ? ? ? ? ? ? ? 1.977 ? disulf ? disulf2 A SG CYS 6 A CYS 6 1_555 A SG CYS 11 A CYS 11 1_555 ? ? ? ? 2 ? ? ? ? ? ? ? 2.089 ? disulf ? disulf3 A SG CYS 7 A CYS 7 1_555 B SG CYS 7 B CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? disulf ? disulf4 A SG CYS 20 A CYS 20 1_555 B SG CYS 19 B CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf5 C SG CYS 6 C CYS 6 1_555 C SG CYS 11 C CYS 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf6 C SG CYS 7 C CYS 7 1_555 D SG CYS 7 D CYS 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf7 C SG CYS 20 C CYS 20 1_555 D SG CYS 19 D CYS 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 B NE2 HIS 10 B HIS 10 1_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc2 B NE2 HIS 10 B HIS 10 2_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc3 B NE2 HIS 10 B HIS 10 3_555 E ZN ZN . B ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc4 E ZN ZN . B ZN 31 1_555 K O HOH . B HOH 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc5 E ZN ZN . B ZN 31 1_555 K O HOH . B HOH 32 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc6 E ZN ZN . B ZN 31 1_555 K O HOH . B HOH 32 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc7 D NE2 HIS 10 D HIS 10 1_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc8 D NE2 HIS 10 D HIS 10 3_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc9 D NE2 HIS 10 D HIS 10 2_555 G ZN ZN . D ZN 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc10 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc11 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? metalc ? metalc12 G ZN ZN . D ZN 31 1_555 H CL CL . D CL 32 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.128 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BEN _atom_sites.fract_transf_matrix[1][1] 0.012389 _atom_sites.fract_transf_matrix[1][2] 0.007153 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014305 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026575 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN B 1 31 31 ZN ZN . F 4 HBD C 1 101 101 HBD HBD . G 3 ZN D 1 31 31 ZN ZN . H 5 CL D 1 32 32 CL CL . I 4 HBD D 1 102 102 HBD HBD . J 6 HOH A 1 22 6 HOH HOH . J 6 HOH A 2 23 8 HOH HOH . J 6 HOH A 3 24 9 HOH HOH . J 6 HOH A 4 25 15 HOH HOH . J 6 HOH A 5 26 20 HOH HOH . J 6 HOH A 6 27 31 HOH HOH . J 6 HOH A 7 28 34 HOH HOH . J 6 HOH A 8 29 35 HOH HOH . J 6 HOH A 9 30 38 HOH HOH . J 6 HOH A 10 31 39 HOH HOH . J 6 HOH A 11 32 43 HOH HOH . J 6 HOH A 12 33 45 HOH HOH . J 6 HOH A 13 34 50 HOH HOH . J 6 HOH A 14 35 52 HOH HOH . J 6 HOH A 15 36 53 HOH HOH . J 6 HOH A 16 37 58 HOH HOH . J 6 HOH A 17 38 72 HOH HOH . J 6 HOH A 18 39 78 HOH HOH . J 6 HOH A 19 40 81 HOH HOH . J 6 HOH A 20 41 84 HOH HOH . J 6 HOH A 21 42 85 HOH HOH . J 6 HOH A 22 43 89 HOH HOH . J 6 HOH A 23 44 102 HOH HOH . J 6 HOH A 24 45 104 HOH HOH . J 6 HOH A 25 46 108 HOH HOH . J 6 HOH A 26 47 111 HOH HOH . J 6 HOH A 27 48 112 HOH HOH . J 6 HOH A 28 49 281 HOH HOH . J 6 HOH A 29 50 282 HOH HOH . J 6 HOH A 30 51 283 HOH HOH . J 6 HOH A 31 52 291 HOH HOH . J 6 HOH A 32 53 292 HOH HOH . J 6 HOH A 33 54 293 HOH HOH . J 6 HOH A 34 55 294 HOH HOH . J 6 HOH A 35 56 361 HOH HOH . J 6 HOH A 36 57 362 HOH HOH . J 6 HOH A 37 58 363 HOH HOH . J 6 HOH A 38 59 381 HOH HOH . J 6 HOH A 39 60 382 HOH HOH . K 6 HOH B 1 32 1 HOH HOH . K 6 HOH B 2 33 2 HOH HOH . K 6 HOH B 3 34 4 HOH HOH . K 6 HOH B 4 35 7 HOH HOH . K 6 HOH B 5 36 12 HOH HOH . K 6 HOH B 6 37 13 HOH HOH . K 6 HOH B 7 38 14 HOH HOH . K 6 HOH B 8 39 19 HOH HOH . K 6 HOH B 9 40 23 HOH HOH . K 6 HOH B 10 41 26 HOH HOH . K 6 HOH B 11 42 28 HOH HOH . K 6 HOH B 12 43 30 HOH HOH . K 6 HOH B 13 44 47 HOH HOH . K 6 HOH B 14 45 49 HOH HOH . K 6 HOH B 15 46 55 HOH HOH . K 6 HOH B 16 47 56 HOH HOH . K 6 HOH B 17 48 59 HOH HOH . K 6 HOH B 18 49 61 HOH HOH . K 6 HOH B 19 50 69 HOH HOH . K 6 HOH B 20 51 70 HOH HOH . K 6 HOH B 21 52 79 HOH HOH . K 6 HOH B 22 53 87 HOH HOH . K 6 HOH B 23 54 92 HOH HOH . K 6 HOH B 24 55 93 HOH HOH . K 6 HOH B 25 56 94 HOH HOH . K 6 HOH B 26 57 97 HOH HOH . K 6 HOH B 27 58 98 HOH HOH . K 6 HOH B 28 59 99 HOH HOH . K 6 HOH B 29 60 100 HOH HOH . K 6 HOH B 30 61 106 HOH HOH . K 6 HOH B 31 62 107 HOH HOH . K 6 HOH B 32 63 109 HOH HOH . K 6 HOH B 33 64 110 HOH HOH . K 6 HOH B 34 65 113 HOH HOH . K 6 HOH B 35 66 115 HOH HOH . K 6 HOH B 36 67 201 HOH HOH . K 6 HOH B 37 68 221 HOH HOH . K 6 HOH B 38 69 222 HOH HOH . K 6 HOH B 39 70 223 HOH HOH . K 6 HOH B 40 71 251 HOH HOH . K 6 HOH B 41 72 252 HOH HOH . K 6 HOH B 42 73 261 HOH HOH . K 6 HOH B 43 74 262 HOH HOH . K 6 HOH B 44 75 263 HOH HOH . K 6 HOH B 45 76 321 HOH HOH . K 6 HOH B 46 77 322 HOH HOH . K 6 HOH B 47 78 331 HOH HOH . K 6 HOH B 48 79 333 HOH HOH . K 6 HOH B 49 80 341 HOH HOH . K 6 HOH B 50 81 342 HOH HOH . L 6 HOH C 1 102 10 HOH HOH . L 6 HOH C 2 103 11 HOH HOH . L 6 HOH C 3 104 22 HOH HOH . L 6 HOH C 4 105 24 HOH HOH . L 6 HOH C 5 106 27 HOH HOH . L 6 HOH C 6 107 29 HOH HOH . L 6 HOH C 7 108 37 HOH HOH . L 6 HOH C 8 109 40 HOH HOH . L 6 HOH C 9 110 46 HOH HOH . L 6 HOH C 10 111 48 HOH HOH . L 6 HOH C 11 112 51 HOH HOH . L 6 HOH C 12 113 57 HOH HOH . L 6 HOH C 13 114 60 HOH HOH . L 6 HOH C 14 115 63 HOH HOH . L 6 HOH C 15 116 64 HOH HOH . L 6 HOH C 16 117 65 HOH HOH . L 6 HOH C 17 118 66 HOH HOH . L 6 HOH C 18 119 68 HOH HOH . L 6 HOH C 19 120 73 HOH HOH . L 6 HOH C 20 121 76 HOH HOH . L 6 HOH C 21 122 77 HOH HOH . L 6 HOH C 22 123 80 HOH HOH . L 6 HOH C 23 124 83 HOH HOH . L 6 HOH C 24 125 88 HOH HOH . L 6 HOH C 25 126 91 HOH HOH . L 6 HOH C 26 127 95 HOH HOH . L 6 HOH C 27 128 96 HOH HOH . L 6 HOH C 28 129 101 HOH HOH . L 6 HOH C 29 130 105 HOH HOH . L 6 HOH C 30 131 114 HOH HOH . L 6 HOH C 31 132 231 HOH HOH . L 6 HOH C 32 133 232 HOH HOH . L 6 HOH C 33 134 351 HOH HOH . L 6 HOH C 34 135 352 HOH HOH . L 6 HOH C 35 136 371 HOH HOH . L 6 HOH C 36 137 372 HOH HOH . L 6 HOH C 37 138 391 HOH HOH . L 6 HOH C 38 139 392 HOH HOH . L 6 HOH C 39 140 401 HOH HOH . L 6 HOH C 40 141 402 HOH HOH . L 6 HOH C 41 142 411 HOH HOH . L 6 HOH C 42 143 412 HOH HOH . M 6 HOH D 1 103 3 HOH HOH . M 6 HOH D 2 104 5 HOH HOH . M 6 HOH D 3 105 16 HOH HOH . M 6 HOH D 4 106 17 HOH HOH . M 6 HOH D 5 107 18 HOH HOH . M 6 HOH D 6 108 21 HOH HOH . M 6 HOH D 7 109 25 HOH HOH . M 6 HOH D 8 110 32 HOH HOH . M 6 HOH D 9 111 33 HOH HOH . M 6 HOH D 10 112 36 HOH HOH . M 6 HOH D 11 113 41 HOH HOH . M 6 HOH D 12 114 42 HOH HOH . M 6 HOH D 13 115 44 HOH HOH . M 6 HOH D 14 116 54 HOH HOH . M 6 HOH D 15 117 62 HOH HOH . M 6 HOH D 16 118 67 HOH HOH . M 6 HOH D 17 119 71 HOH HOH . M 6 HOH D 18 120 74 HOH HOH . M 6 HOH D 19 121 75 HOH HOH . M 6 HOH D 20 122 82 HOH HOH . M 6 HOH D 21 123 86 HOH HOH . M 6 HOH D 22 124 90 HOH HOH . M 6 HOH D 23 125 103 HOH HOH . M 6 HOH D 24 126 211 HOH HOH . M 6 HOH D 25 127 212 HOH HOH . M 6 HOH D 26 128 241 HOH HOH . M 6 HOH D 27 129 242 HOH HOH . M 6 HOH D 28 130 271 HOH HOH . M 6 HOH D 29 131 272 HOH HOH . M 6 HOH D 30 132 301 HOH HOH . M 6 HOH D 31 133 302 HOH HOH . M 6 HOH D 32 134 303 HOH HOH . M 6 HOH D 33 135 304 HOH HOH . M 6 HOH D 34 136 305 HOH HOH . M 6 HOH D 35 137 311 HOH HOH . M 6 HOH D 36 138 312 HOH HOH . M 6 HOH D 37 139 364 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x 0 _atom_site.Cartn_y 0 _atom_site.Cartn_z -7.502 _atom_site.occupancy 0.33 _atom_site.B_iso_or_equiv 17.14 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 31 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #