data_1BEX # _model_server_result.job_id V_BG_W6PPxM_OoInJq-H_Q _model_server_result.datetime_utc '2024-12-01 12:28:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bex # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":129}' # _entry.id 1BEX # _exptl.entry_id 1BEX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 63.546 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'COPPER (II) ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.5 _cell.angle_gamma 90 _cell.entry_id 1BEX _cell.length_a 100.6 _cell.length_b 35.4 _cell.length_c 74.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BEX _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J 1 1 A,C,D,E,I 2 1 B,F,G,H,J 2 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 3 A CYS 3 1_555 A SG CYS 26 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 B SG CYS 3 B CYS 3 1_555 B SG CYS 26 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A N ALA 1 A ALA 1 1_555 D CU CU . A CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.785 ? metalc ? metalc2 A O ALA 1 A ALA 1 1_555 D CU CU . A CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc3 A OD2 ASP 23 A ASP 23 1_555 D CU CU . A CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.439 ? metalc ? metalc4 A OD2 ASP 23 A ASP 23 2_555 G CU CU . B CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 A OD1 ASP 23 A ASP 23 2_555 G CU CU . B CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? metalc ? metalc6 A ND1 HIS 46 A HIS 46 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? metalc ? metalc7 A NE2 HIS 83 A HIS 83 1_555 E RU RBU . A RBU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.11 ? metalc ? metalc8 A SG CYS 112 A CYS 112 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? metalc ? metalc9 A ND1 HIS 117 A HIS 117 1_555 C CU CU . A CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc10 D CU CU . A CU 131 1_555 B OD2 ASP 23 B ASP 23 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.449 ? metalc ? metalc11 D CU CU . A CU 131 1_555 B OD1 ASP 23 B ASP 23 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.708 ? metalc ? metalc12 B N ALA 1 B ALA 1 1_555 G CU CU . B CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc13 B O ALA 1 B ALA 1 1_555 G CU CU . B CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc14 B OD2 ASP 23 B ASP 23 1_555 G CU CU . B CU 131 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc15 B ND1 HIS 46 B HIS 46 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc16 B NE2 HIS 83 B HIS 83 1_555 H RU RBU . B RBU 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc17 B SG CYS 112 B CYS 112 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc18 B ND1 HIS 117 B HIS 117 1_555 F CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? # _chem_comp.formula 'Cu 2' _chem_comp.formula_weight 63.546 _chem_comp.id CU _chem_comp.mon_nstd_flag . _chem_comp.name 'COPPER (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BEX _atom_sites.fract_transf_matrix[1][1] 0.00994 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002944 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.028249 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013962 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CU A 1 129 129 CU CU . D 2 CU A 1 131 131 CU CU . E 3 RBU A 1 130 130 RBU RBU . F 2 CU B 1 129 129 CU CU . G 2 CU B 1 131 131 CU CU . H 3 RBU B 1 130 130 RBU RBU . I 4 HOH A 1 501 501 HOH HOH . I 4 HOH A 2 502 502 HOH HOH . I 4 HOH A 3 503 503 HOH HOH . I 4 HOH A 4 504 504 HOH HOH . I 4 HOH A 5 505 505 HOH HOH . I 4 HOH A 6 506 506 HOH HOH . I 4 HOH A 7 507 507 HOH HOH . I 4 HOH A 8 508 508 HOH HOH . I 4 HOH A 9 509 509 HOH HOH . I 4 HOH A 10 510 510 HOH HOH . I 4 HOH A 11 511 511 HOH HOH . I 4 HOH A 12 512 512 HOH HOH . I 4 HOH A 13 513 513 HOH HOH . I 4 HOH A 14 514 514 HOH HOH . I 4 HOH A 15 515 515 HOH HOH . I 4 HOH A 16 516 516 HOH HOH . I 4 HOH A 17 517 517 HOH HOH . I 4 HOH A 18 518 518 HOH HOH . I 4 HOH A 19 519 519 HOH HOH . I 4 HOH A 20 520 520 HOH HOH . I 4 HOH A 21 531 531 HOH HOH . I 4 HOH A 22 533 533 HOH HOH . I 4 HOH A 23 534 534 HOH HOH . I 4 HOH A 24 538 538 HOH HOH . I 4 HOH A 25 539 539 HOH HOH . I 4 HOH A 26 540 540 HOH HOH . I 4 HOH A 27 542 542 HOH HOH . I 4 HOH A 28 543 543 HOH HOH . I 4 HOH A 29 544 544 HOH HOH . I 4 HOH A 30 545 545 HOH HOH . I 4 HOH A 31 546 546 HOH HOH . I 4 HOH A 32 547 547 HOH HOH . I 4 HOH A 33 548 548 HOH HOH . I 4 HOH A 34 549 549 HOH HOH . I 4 HOH A 35 550 550 HOH HOH . I 4 HOH A 36 551 551 HOH HOH . I 4 HOH A 37 552 552 HOH HOH . I 4 HOH A 38 553 553 HOH HOH . I 4 HOH A 39 554 554 HOH HOH . I 4 HOH A 40 555 555 HOH HOH . I 4 HOH A 41 556 556 HOH HOH . I 4 HOH A 42 557 557 HOH HOH . I 4 HOH A 43 558 558 HOH HOH . I 4 HOH A 44 561 561 HOH HOH . I 4 HOH A 45 562 562 HOH HOH . I 4 HOH A 46 563 563 HOH HOH . I 4 HOH A 47 564 564 HOH HOH . I 4 HOH A 48 574 574 HOH HOH . I 4 HOH A 49 575 575 HOH HOH . I 4 HOH A 50 576 576 HOH HOH . I 4 HOH A 51 578 578 HOH HOH . J 4 HOH B 1 521 521 HOH HOH . J 4 HOH B 2 522 522 HOH HOH . J 4 HOH B 3 523 523 HOH HOH . J 4 HOH B 4 524 524 HOH HOH . J 4 HOH B 5 525 525 HOH HOH . J 4 HOH B 6 526 526 HOH HOH . J 4 HOH B 7 527 527 HOH HOH . J 4 HOH B 8 528 528 HOH HOH . J 4 HOH B 9 529 529 HOH HOH . J 4 HOH B 10 530 530 HOH HOH . J 4 HOH B 11 532 532 HOH HOH . J 4 HOH B 12 535 535 HOH HOH . J 4 HOH B 13 536 536 HOH HOH . J 4 HOH B 14 537 537 HOH HOH . J 4 HOH B 15 541 541 HOH HOH . J 4 HOH B 16 559 559 HOH HOH . J 4 HOH B 17 560 560 HOH HOH . J 4 HOH B 18 565 565 HOH HOH . J 4 HOH B 19 566 566 HOH HOH . J 4 HOH B 20 567 567 HOH HOH . J 4 HOH B 21 568 568 HOH HOH . J 4 HOH B 22 569 569 HOH HOH . J 4 HOH B 23 570 570 HOH HOH . J 4 HOH B 24 571 571 HOH HOH . J 4 HOH B 25 572 572 HOH HOH . J 4 HOH B 26 573 573 HOH HOH . J 4 HOH B 27 577 577 HOH HOH . J 4 HOH B 28 579 579 HOH HOH . J 4 HOH B 29 580 580 HOH HOH . J 4 HOH B 30 581 581 HOH HOH . J 4 HOH B 31 582 582 HOH HOH . J 4 HOH B 32 583 583 HOH HOH . J 4 HOH B 33 584 584 HOH HOH . J 4 HOH B 34 585 585 HOH HOH . J 4 HOH B 35 586 586 HOH HOH . J 4 HOH B 36 587 587 HOH HOH . J 4 HOH B 37 588 588 HOH HOH . J 4 HOH B 38 589 589 HOH HOH . J 4 HOH B 39 590 590 HOH HOH . J 4 HOH B 40 591 591 HOH HOH . J 4 HOH B 41 592 592 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CU _atom_site.label_atom_id CU _atom_site.label_comp_id CU _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 2 _atom_site.Cartn_x 26.053 _atom_site.Cartn_y 4.767 _atom_site.Cartn_z 24.556 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CU _atom_site.auth_comp_id CU _atom_site.auth_seq_id 129 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 31 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #