data_1BFU # _model_server_result.job_id Muy8ZJGiFeqoOrRwKkOfyg _model_server_result.datetime_utc '2024-12-24 12:17:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bfu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":368}' # _entry.id 1BFU # _exptl.entry_id 1BFU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.105 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '1,4-DIETHYLENE DIOXIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BFU _cell.length_a 77.555 _cell.length_b 55.173 _cell.length_c 53.862 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BFU _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLN 2 A GLN 2 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? metalc ? metalc2 A OD2 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.759 ? metalc ? metalc3 A OD1 ASP 41 A ASP 41 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.558 ? metalc ? metalc4 A O LEU 74 A LEU 75 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.46 ? metalc ? metalc5 A ND2 ASN 76 A ASN 77 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc6 A O THR 78 A THR 79 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.45 ? metalc ? metalc7 A O VAL 80 A VAL 81 1_555 B CA CA . A CA 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? # _chem_comp.formula 'C4 H8 O2' _chem_comp.formula_weight 88.105 _chem_comp.id DIO _chem_comp.mon_nstd_flag . _chem_comp.name '1,4-DIETHYLENE DIOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C1' DIO sing 70 n n C1 O1 DIO sing 71 n n C1 H11 DIO sing 72 n n C1 H12 DIO sing 73 n n C2 C2' DIO sing 74 n n C2 O1 DIO sing 75 n n C2 H21 DIO sing 76 n n C2 H22 DIO sing 77 n n C1' O1' DIO sing 78 n n C1' "H1'1" DIO sing 79 n n C1' "H1'2" DIO sing 80 n n C2' O1' DIO sing 81 n n C2' "H2'1" DIO sing 82 n n C2' "H2'2" DIO sing 83 n n # _atom_sites.entry_id 1BFU _atom_sites.fract_transf_matrix[1][1] 0.012894 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018125 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 276 276 CA CA . C 3 DIO A 1 368 368 DIO DIO . D 4 HOH A 1 277 277 HOH HOH . D 4 HOH A 2 278 278 HOH HOH . D 4 HOH A 3 279 279 HOH HOH . D 4 HOH A 4 280 280 HOH HOH . D 4 HOH A 5 281 281 HOH HOH . D 4 HOH A 6 282 282 HOH HOH . D 4 HOH A 7 283 283 HOH HOH . D 4 HOH A 8 284 284 HOH HOH . D 4 HOH A 9 285 285 HOH HOH . D 4 HOH A 10 286 286 HOH HOH . D 4 HOH A 11 287 287 HOH HOH . D 4 HOH A 12 288 288 HOH HOH . D 4 HOH A 13 289 289 HOH HOH . D 4 HOH A 14 290 290 HOH HOH . D 4 HOH A 15 291 291 HOH HOH . D 4 HOH A 16 292 292 HOH HOH . D 4 HOH A 17 293 293 HOH HOH . D 4 HOH A 18 294 294 HOH HOH . D 4 HOH A 19 295 295 HOH HOH . D 4 HOH A 20 296 296 HOH HOH . D 4 HOH A 21 297 297 HOH HOH . D 4 HOH A 22 298 298 HOH HOH . D 4 HOH A 23 299 299 HOH HOH . D 4 HOH A 24 300 300 HOH HOH . D 4 HOH A 25 301 301 HOH HOH . D 4 HOH A 26 302 302 HOH HOH . D 4 HOH A 27 303 303 HOH HOH . D 4 HOH A 28 304 304 HOH HOH . D 4 HOH A 29 305 305 HOH HOH . D 4 HOH A 30 306 306 HOH HOH . D 4 HOH A 31 307 307 HOH HOH . D 4 HOH A 32 308 308 HOH HOH . D 4 HOH A 33 309 309 HOH HOH . D 4 HOH A 34 310 310 HOH HOH . D 4 HOH A 35 311 311 HOH HOH . D 4 HOH A 36 312 312 HOH HOH . D 4 HOH A 37 313 313 HOH HOH . D 4 HOH A 38 314 314 HOH HOH . D 4 HOH A 39 315 315 HOH HOH . D 4 HOH A 40 316 316 HOH HOH . D 4 HOH A 41 317 317 HOH HOH . D 4 HOH A 42 318 318 HOH HOH . D 4 HOH A 43 319 319 HOH HOH . D 4 HOH A 44 320 320 HOH HOH . D 4 HOH A 45 321 321 HOH HOH . D 4 HOH A 46 322 322 HOH HOH . D 4 HOH A 47 323 323 HOH HOH . D 4 HOH A 48 324 324 HOH HOH . D 4 HOH A 49 325 325 HOH HOH . D 4 HOH A 50 326 326 HOH HOH . D 4 HOH A 51 327 327 HOH HOH . D 4 HOH A 52 328 328 HOH HOH . D 4 HOH A 53 329 329 HOH HOH . D 4 HOH A 54 330 330 HOH HOH . D 4 HOH A 55 331 331 HOH HOH . D 4 HOH A 56 332 332 HOH HOH . D 4 HOH A 57 333 333 HOH HOH . D 4 HOH A 58 334 334 HOH HOH . D 4 HOH A 59 335 335 HOH HOH . D 4 HOH A 60 336 336 HOH HOH . D 4 HOH A 61 337 337 HOH HOH . D 4 HOH A 62 338 338 HOH HOH . D 4 HOH A 63 339 339 HOH HOH . D 4 HOH A 64 340 340 HOH HOH . D 4 HOH A 65 341 341 HOH HOH . D 4 HOH A 66 342 342 HOH HOH . D 4 HOH A 67 343 343 HOH HOH . D 4 HOH A 68 344 344 HOH HOH . D 4 HOH A 69 346 346 HOH HOH . D 4 HOH A 70 347 347 HOH HOH . D 4 HOH A 71 348 348 HOH HOH . D 4 HOH A 72 349 349 HOH HOH . D 4 HOH A 73 350 350 HOH HOH . D 4 HOH A 74 351 351 HOH HOH . D 4 HOH A 75 352 352 HOH HOH . D 4 HOH A 76 353 353 HOH HOH . D 4 HOH A 77 354 354 HOH HOH . D 4 HOH A 78 355 355 HOH HOH . D 4 HOH A 79 356 356 HOH HOH . D 4 HOH A 80 357 357 HOH HOH . D 4 HOH A 81 358 358 HOH HOH . D 4 HOH A 82 359 359 HOH HOH . D 4 HOH A 83 360 360 HOH HOH . D 4 HOH A 84 361 361 HOH HOH . D 4 HOH A 85 362 362 HOH HOH . D 4 HOH A 86 363 363 HOH HOH . D 4 HOH A 87 364 364 HOH HOH . D 4 HOH A 88 365 365 HOH HOH . D 4 HOH A 89 366 366 HOH HOH . D 4 HOH A 90 367 367 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DIO . . . C 3 -1.89 8.175 10.311 1 64.27 ? C1 DIO 368 A 1 HETATM 2 C C2 DIO . . . C 3 0.278 8.292 11.352 1 64.3 ? C2 DIO 368 A 1 HETATM 3 C C1' DIO . . . C 3 -1.213 8.378 8.869 1 63.79 ? C1' DIO 368 A 1 HETATM 4 C C2' DIO . . . C 3 0.914 8.619 9.988 1 64.76 ? C2' DIO 368 A 1 HETATM 5 O O1 DIO . . . C 3 -1.093 8.788 11.377 1 62.38 ? O1 DIO 368 A 1 HETATM 6 O O1' DIO . . . C 3 0.176 7.966 8.896 1 65.22 ? O1' DIO 368 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #