data_1BG2 # _model_server_result.job_id R4t1PvxCcIFMCO2q-PhiTA _model_server_result.datetime_utc '2024-11-15 20:34:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bg2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 1BG2 # _exptl.entry_id 1BG2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BG2 _cell.length_a 48.54 _cell.length_b 67.94 _cell.length_c 112.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BG2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 92 A THR 92 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc2 F O1B ADP . A ADP 401 1_555 B MG MG . A MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc3 B MG MG . A MG 402 1_555 G O HOH . A HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? metalc ? metalc4 B MG MG . A MG 402 1_555 G O HOH . A HOH 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc5 B MG MG . A MG 402 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc6 B MG MG . A MG 402 1_555 G O HOH . A HOH 528 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.193 ? # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id ADP _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-5'-DIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PB O1B ADP doub 7 n n PB O2B ADP sing 8 n n PB O3B ADP sing 9 n n PB O3A ADP sing 10 n n O2B HOB2 ADP sing 11 n n O3B HOB3 ADP sing 12 n n PA O1A ADP doub 13 n n PA O2A ADP sing 14 n n PA O3A ADP sing 15 n n PA O5' ADP sing 16 n n O2A HOA2 ADP sing 17 n n O5' C5' ADP sing 18 n n C5' C4' ADP sing 19 n n C5' "H5'1" ADP sing 20 n n C5' "H5'2" ADP sing 21 n n C4' O4' ADP sing 22 n n C4' C3' ADP sing 23 n n C4' H4' ADP sing 24 n n O4' C1' ADP sing 25 n n C3' O3' ADP sing 26 n n C3' C2' ADP sing 27 n n C3' H3' ADP sing 28 n n O3' HO3' ADP sing 29 n n C2' O2' ADP sing 30 n n C2' C1' ADP sing 31 n n C2' H2' ADP sing 32 n n O2' HO2' ADP sing 33 n n C1' N9 ADP sing 34 n n C1' H1' ADP sing 35 n n N9 C8 ADP sing 36 n y N9 C4 ADP sing 37 n y C8 N7 ADP doub 38 n y C8 H8 ADP sing 39 n n N7 C5 ADP sing 40 n y C5 C6 ADP sing 41 n y C5 C4 ADP doub 42 n y C6 N6 ADP sing 43 n n C6 N1 ADP doub 44 n y N6 HN61 ADP sing 45 n n N6 HN62 ADP sing 46 n n N1 C2 ADP sing 47 n y C2 N3 ADP doub 48 n y C2 H2 ADP sing 49 n n N3 C4 ADP sing 50 n y # _atom_sites.entry_id 1BG2 _atom_sites.fract_transf_matrix[1][1] 0.020602 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008853 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 402 402 MG MG . C 3 ACT A 1 403 403 ACT ACT . D 3 ACT A 1 404 404 ACT ACT . E 3 ACT A 1 405 405 ACT ACT . F 4 ADP A 1 401 401 ADP ADP . G 5 HOH A 1 501 501 HOH HOH . G 5 HOH A 2 502 502 HOH HOH . G 5 HOH A 3 503 503 HOH HOH . G 5 HOH A 4 504 504 HOH HOH . G 5 HOH A 5 505 505 HOH HOH . G 5 HOH A 6 506 506 HOH HOH . G 5 HOH A 7 507 507 HOH HOH . G 5 HOH A 8 508 508 HOH HOH . G 5 HOH A 9 509 509 HOH HOH . G 5 HOH A 10 510 510 HOH HOH . G 5 HOH A 11 511 511 HOH HOH . G 5 HOH A 12 512 512 HOH HOH . G 5 HOH A 13 513 513 HOH HOH . G 5 HOH A 14 514 514 HOH HOH . G 5 HOH A 15 515 515 HOH HOH . G 5 HOH A 16 516 516 HOH HOH . G 5 HOH A 17 517 517 HOH HOH . G 5 HOH A 18 518 518 HOH HOH . G 5 HOH A 19 519 519 HOH HOH . G 5 HOH A 20 520 520 HOH HOH . G 5 HOH A 21 521 521 HOH HOH . G 5 HOH A 22 522 522 HOH HOH . G 5 HOH A 23 523 523 HOH HOH . G 5 HOH A 24 524 524 HOH HOH . G 5 HOH A 25 525 525 HOH HOH . G 5 HOH A 26 526 526 HOH HOH . G 5 HOH A 27 527 527 HOH HOH . G 5 HOH A 28 528 528 HOH HOH . G 5 HOH A 29 529 529 HOH HOH . G 5 HOH A 30 530 530 HOH HOH . G 5 HOH A 31 531 531 HOH HOH . G 5 HOH A 32 532 532 HOH HOH . G 5 HOH A 33 533 533 HOH HOH . G 5 HOH A 34 534 534 HOH HOH . G 5 HOH A 35 535 535 HOH HOH . G 5 HOH A 36 536 536 HOH HOH . G 5 HOH A 37 537 537 HOH HOH . G 5 HOH A 38 538 538 HOH HOH . G 5 HOH A 39 539 539 HOH HOH . G 5 HOH A 40 540 540 HOH HOH . G 5 HOH A 41 541 541 HOH HOH . G 5 HOH A 42 542 542 HOH HOH . G 5 HOH A 43 543 543 HOH HOH . G 5 HOH A 44 544 544 HOH HOH . G 5 HOH A 45 545 545 HOH HOH . G 5 HOH A 46 546 546 HOH HOH . G 5 HOH A 47 547 547 HOH HOH . G 5 HOH A 48 548 548 HOH HOH . G 5 HOH A 49 549 549 HOH HOH . G 5 HOH A 50 550 550 HOH HOH . G 5 HOH A 51 551 551 HOH HOH . G 5 HOH A 52 552 552 HOH HOH . G 5 HOH A 53 553 553 HOH HOH . G 5 HOH A 54 554 554 HOH HOH . G 5 HOH A 55 555 555 HOH HOH . G 5 HOH A 56 556 556 HOH HOH . G 5 HOH A 57 557 557 HOH HOH . G 5 HOH A 58 558 558 HOH HOH . G 5 HOH A 59 559 559 HOH HOH . G 5 HOH A 60 560 560 HOH HOH . G 5 HOH A 61 561 561 HOH HOH . G 5 HOH A 62 562 562 HOH HOH . G 5 HOH A 63 563 563 HOH HOH . G 5 HOH A 64 564 564 HOH HOH . G 5 HOH A 65 565 565 HOH HOH . G 5 HOH A 66 566 566 HOH HOH . G 5 HOH A 67 567 567 HOH HOH . G 5 HOH A 68 568 568 HOH HOH . G 5 HOH A 69 569 569 HOH HOH . G 5 HOH A 70 570 570 HOH HOH . G 5 HOH A 71 571 571 HOH HOH . G 5 HOH A 72 572 572 HOH HOH . G 5 HOH A 73 573 573 HOH HOH . G 5 HOH A 74 574 574 HOH HOH . G 5 HOH A 75 575 575 HOH HOH . G 5 HOH A 76 576 576 HOH HOH . G 5 HOH A 77 577 577 HOH HOH . G 5 HOH A 78 578 578 HOH HOH . G 5 HOH A 79 579 579 HOH HOH . G 5 HOH A 80 580 580 HOH HOH . G 5 HOH A 81 581 581 HOH HOH . G 5 HOH A 82 582 582 HOH HOH . G 5 HOH A 83 583 583 HOH HOH . G 5 HOH A 84 584 584 HOH HOH . G 5 HOH A 85 585 585 HOH HOH . G 5 HOH A 86 586 586 HOH HOH . G 5 HOH A 87 587 587 HOH HOH . G 5 HOH A 88 588 588 HOH HOH . G 5 HOH A 89 589 589 HOH HOH . G 5 HOH A 90 590 590 HOH HOH . G 5 HOH A 91 591 591 HOH HOH . G 5 HOH A 92 592 592 HOH HOH . G 5 HOH A 93 593 593 HOH HOH . G 5 HOH A 94 594 594 HOH HOH . G 5 HOH A 95 595 595 HOH HOH . G 5 HOH A 96 596 596 HOH HOH . G 5 HOH A 97 597 597 HOH HOH . G 5 HOH A 98 598 598 HOH HOH . G 5 HOH A 99 599 599 HOH HOH . G 5 HOH A 100 600 600 HOH HOH . G 5 HOH A 101 601 601 HOH HOH . G 5 HOH A 102 602 602 HOH HOH . G 5 HOH A 103 603 603 HOH HOH . G 5 HOH A 104 604 604 HOH HOH . G 5 HOH A 105 605 605 HOH HOH . G 5 HOH A 106 606 606 HOH HOH . G 5 HOH A 107 607 607 HOH HOH . G 5 HOH A 108 608 608 HOH HOH . G 5 HOH A 109 609 609 HOH HOH . G 5 HOH A 110 610 610 HOH HOH . G 5 HOH A 111 611 611 HOH HOH . G 5 HOH A 112 612 612 HOH HOH . G 5 HOH A 113 613 613 HOH HOH . G 5 HOH A 114 614 614 HOH HOH . G 5 HOH A 115 615 615 HOH HOH . G 5 HOH A 116 616 616 HOH HOH . G 5 HOH A 117 617 617 HOH HOH . G 5 HOH A 118 618 618 HOH HOH . G 5 HOH A 119 619 619 HOH HOH . G 5 HOH A 120 620 620 HOH HOH . G 5 HOH A 121 621 621 HOH HOH . G 5 HOH A 122 622 622 HOH HOH . G 5 HOH A 123 623 623 HOH HOH . G 5 HOH A 124 624 624 HOH HOH . G 5 HOH A 125 625 625 HOH HOH . G 5 HOH A 126 626 626 HOH HOH . G 5 HOH A 127 627 627 HOH HOH . G 5 HOH A 128 628 628 HOH HOH . G 5 HOH A 129 629 629 HOH HOH . G 5 HOH A 130 630 630 HOH HOH . G 5 HOH A 131 631 631 HOH HOH . G 5 HOH A 132 632 632 HOH HOH . G 5 HOH A 133 633 633 HOH HOH . G 5 HOH A 134 634 634 HOH HOH . G 5 HOH A 135 635 635 HOH HOH . G 5 HOH A 136 636 636 HOH HOH . G 5 HOH A 137 637 637 HOH HOH . G 5 HOH A 138 638 638 HOH HOH . G 5 HOH A 139 639 639 HOH HOH . G 5 HOH A 140 640 640 HOH HOH . G 5 HOH A 141 641 641 HOH HOH . G 5 HOH A 142 642 642 HOH HOH . G 5 HOH A 143 643 643 HOH HOH . G 5 HOH A 144 644 644 HOH HOH . G 5 HOH A 145 645 645 HOH HOH . G 5 HOH A 146 646 646 HOH HOH . G 5 HOH A 147 647 647 HOH HOH . G 5 HOH A 148 648 648 HOH HOH . G 5 HOH A 149 649 649 HOH HOH . G 5 HOH A 150 650 650 HOH HOH . G 5 HOH A 151 651 651 HOH HOH . G 5 HOH A 152 652 652 HOH HOH . G 5 HOH A 153 653 653 HOH HOH . G 5 HOH A 154 654 654 HOH HOH . G 5 HOH A 155 655 655 HOH HOH . G 5 HOH A 156 656 656 HOH HOH . G 5 HOH A 157 657 657 HOH HOH . G 5 HOH A 158 658 658 HOH HOH . G 5 HOH A 159 659 659 HOH HOH . G 5 HOH A 160 660 660 HOH HOH . G 5 HOH A 161 661 661 HOH HOH . G 5 HOH A 162 662 662 HOH HOH . G 5 HOH A 163 663 663 HOH HOH . G 5 HOH A 164 664 664 HOH HOH . G 5 HOH A 165 665 665 HOH HOH . G 5 HOH A 166 666 666 HOH HOH . G 5 HOH A 167 667 667 HOH HOH . G 5 HOH A 168 668 668 HOH HOH . G 5 HOH A 169 669 669 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PB ADP . . . F 4 14.18 10.137 41.881 1 16.29 ? PB ADP 401 A 1 HETATM 2 O O1B ADP . . . F 4 15.267 11.036 41.417 1 16.48 ? O1B ADP 401 A 1 HETATM 3 O O2B ADP . . . F 4 13.072 9.933 40.941 1 12.23 ? O2B ADP 401 A 1 HETATM 4 O O3B ADP . . . F 4 14.754 8.922 42.506 1 21.18 ? O3B ADP 401 A 1 HETATM 5 P PA ADP . . . F 4 13.662 12.296 43.884 1 17.9 ? PA ADP 401 A 1 HETATM 6 O O1A ADP . . . F 4 15.046 12.298 44.362 1 11.97 ? O1A ADP 401 A 1 HETATM 7 O O2A ADP . . . F 4 13.229 13.342 42.924 1 22.58 ? O2A ADP 401 A 1 HETATM 8 O O3A ADP . . . F 4 13.465 10.904 43.097 1 19.22 ? O3A ADP 401 A 1 HETATM 9 O O5' ADP . . . F 4 12.556 12.158 45.037 1 16.35 ? O5' ADP 401 A 1 HETATM 10 C C5' ADP . . . F 4 11.143 12.343 44.827 1 17.1 ? C5' ADP 401 A 1 HETATM 11 C C4' ADP . . . F 4 10.623 13.268 45.929 1 25 ? C4' ADP 401 A 1 HETATM 12 O O4' ADP . . . F 4 10.875 12.635 47.198 1 23.89 ? O4' ADP 401 A 1 HETATM 13 C C3' ADP . . . F 4 11.364 14.618 46.006 1 26.61 ? C3' ADP 401 A 1 HETATM 14 O O3' ADP . . . F 4 10.615 15.717 46.556 1 30.51 ? O3' ADP 401 A 1 HETATM 15 C C2' ADP . . . F 4 12.485 14.317 46.972 1 23.79 ? C2' ADP 401 A 1 HETATM 16 O O2' ADP . . . F 4 13.034 15.517 47.518 1 28.15 ? O2' ADP 401 A 1 HETATM 17 C C1' ADP . . . F 4 11.74 13.47 47.977 1 22.55 ? C1' ADP 401 A 1 HETATM 18 N N9 ADP . . . F 4 12.667 12.671 48.792 1 22.67 ? N9 ADP 401 A 1 HETATM 19 C C8 ADP . . . F 4 13.575 11.802 48.321 1 19.15 ? C8 ADP 401 A 1 HETATM 20 N N7 ADP . . . F 4 14.465 11.486 49.272 1 22.82 ? N7 ADP 401 A 1 HETATM 21 C C5 ADP . . . F 4 14.025 12.129 50.35 1 22.42 ? C5 ADP 401 A 1 HETATM 22 C C6 ADP . . . F 4 14.689 12.191 51.574 1 24.95 ? C6 ADP 401 A 1 HETATM 23 N N6 ADP . . . F 4 15.773 11.46 51.813 1 21.53 ? N6 ADP 401 A 1 HETATM 24 N N1 ADP . . . F 4 14.185 13.04 52.495 1 24.98 ? N1 ADP 401 A 1 HETATM 25 C C2 ADP . . . F 4 13.083 13.751 52.24 1 22.48 ? C2 ADP 401 A 1 HETATM 26 N N3 ADP . . . F 4 12.454 13.686 51.068 1 23.99 ? N3 ADP 401 A 1 HETATM 27 C C4 ADP . . . F 4 12.913 12.885 50.084 1 22.93 ? C4 ADP 401 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 27 #