data_1BG9 # _model_server_result.job_id Sms49tVEA-E8J0QN2SqIFw _model_server_result.datetime_utc '2024-11-24 18:11:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bg9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 1BG9 # _exptl.entry_id 1BG9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1BG9 _cell.length_a 135.2 _cell.length_b 135.2 _cell.length_c 79.6 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BG9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 79.6 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 DAF _pdbx_entity_branch_link.comp_id_2 BGC _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B BGC 1 B 1 BGC ? 801 BGC 2 n B DAF 2 B 2 DAF ? 800 DAF # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B O4 BGC . B BGC 1 1_555 B C1 DAF . B DAF 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? metalc ? metalc1 A OD1 ASN 91 A ASN 91 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.159 ? metalc ? metalc2 A OE1 GLU 108 A GLU 108 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.793 ? metalc ? metalc3 A OE2 GLU 108 A GLU 108 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc4 A O THR 111 A THR 111 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A O ASP 113 A ASP 113 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc6 A OD2 ASP 117 A ASP 117 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.347 ? metalc ? metalc7 A OD1 ASP 117 A ASP 117 1_555 D CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc8 A OD2 ASP 127 A ASP 127 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc9 A OD1 ASP 127 A ASP 127 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.568 ? metalc ? metalc10 A OD1 ASP 138 A ASP 138 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc11 A OD2 ASP 138 A ASP 138 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.597 ? metalc ? metalc12 A O ALA 141 A ALA 141 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc13 A OD1 ASP 142 A ASP 142 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.576 ? metalc ? metalc14 A O PHE 143 A PHE 143 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc15 A O ALA 146 A ALA 146 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc16 A OD2 ASP 148 A ASP 148 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc17 A OD1 ASP 148 A ASP 148 1_555 E CA CA . A CA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc18 A O GLY 183 A GLY 183 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? metalc ? metalc19 C CA CA . A CA 500 1_555 G O HOH . A HOH 630 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? metalc ? metalc20 D CA CA . A CA 501 1_555 G O HOH . A HOH 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc21 D CA CA . A CA 501 1_555 G O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BG9 _atom_sites.fract_transf_matrix[1][1] 0.007396 _atom_sites.fract_transf_matrix[1][2] 0.00427 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008541 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012563 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA A 1 500 500 CA CA . D 3 CA A 1 501 501 CA CA . E 3 CA A 1 502 502 CA CA . F 4 AF1 A 1 803 803 AF1 AF1 . G 5 HOH A 1 600 600 HOH HOH . G 5 HOH A 2 601 601 HOH HOH . G 5 HOH A 3 602 602 HOH HOH . G 5 HOH A 4 603 603 HOH HOH . G 5 HOH A 5 604 604 HOH HOH . G 5 HOH A 6 605 605 HOH HOH . G 5 HOH A 7 606 606 HOH HOH . G 5 HOH A 8 607 607 HOH HOH . G 5 HOH A 9 608 608 HOH HOH . G 5 HOH A 10 609 609 HOH HOH . G 5 HOH A 11 610 610 HOH HOH . G 5 HOH A 12 611 611 HOH HOH . G 5 HOH A 13 612 612 HOH HOH . G 5 HOH A 14 613 613 HOH HOH . G 5 HOH A 15 614 614 HOH HOH . G 5 HOH A 16 615 615 HOH HOH . G 5 HOH A 17 616 616 HOH HOH . G 5 HOH A 18 617 617 HOH HOH . G 5 HOH A 19 618 618 HOH HOH . G 5 HOH A 20 619 619 HOH HOH . G 5 HOH A 21 620 620 HOH HOH . G 5 HOH A 22 621 621 HOH HOH . G 5 HOH A 23 622 622 HOH HOH . G 5 HOH A 24 624 624 HOH HOH . G 5 HOH A 25 625 625 HOH HOH . G 5 HOH A 26 626 626 HOH HOH . G 5 HOH A 27 627 627 HOH HOH . G 5 HOH A 28 628 628 HOH HOH . G 5 HOH A 29 629 629 HOH HOH . G 5 HOH A 30 630 630 HOH HOH . G 5 HOH A 31 631 631 HOH HOH . G 5 HOH A 32 632 632 HOH HOH . G 5 HOH A 33 633 633 HOH HOH . G 5 HOH A 34 635 635 HOH HOH . G 5 HOH A 35 636 636 HOH HOH . G 5 HOH A 36 637 637 HOH HOH . G 5 HOH A 37 638 638 HOH HOH . G 5 HOH A 38 639 639 HOH HOH . G 5 HOH A 39 640 640 HOH HOH . G 5 HOH A 40 642 642 HOH HOH . G 5 HOH A 41 643 643 HOH HOH . G 5 HOH A 42 644 644 HOH HOH . G 5 HOH A 43 645 645 HOH HOH . G 5 HOH A 44 646 646 HOH HOH . G 5 HOH A 45 647 647 HOH HOH . G 5 HOH A 46 648 648 HOH HOH . G 5 HOH A 47 649 649 HOH HOH . G 5 HOH A 48 650 650 HOH HOH . G 5 HOH A 49 651 651 HOH HOH . G 5 HOH A 50 652 652 HOH HOH . G 5 HOH A 51 653 653 HOH HOH . G 5 HOH A 52 654 654 HOH HOH . G 5 HOH A 53 655 655 HOH HOH . G 5 HOH A 54 656 656 HOH HOH . G 5 HOH A 55 657 657 HOH HOH . G 5 HOH A 56 658 658 HOH HOH . G 5 HOH A 57 659 659 HOH HOH . G 5 HOH A 58 660 660 HOH HOH . G 5 HOH A 59 661 661 HOH HOH . G 5 HOH A 60 662 662 HOH HOH . G 5 HOH A 61 663 663 HOH HOH . G 5 HOH A 62 664 664 HOH HOH . G 5 HOH A 63 666 666 HOH HOH . G 5 HOH A 64 667 667 HOH HOH . G 5 HOH A 65 668 668 HOH HOH . G 5 HOH A 66 669 669 HOH HOH . G 5 HOH A 67 670 670 HOH HOH . G 5 HOH A 68 671 671 HOH HOH . G 5 HOH A 69 672 672 HOH HOH . G 5 HOH A 70 673 673 HOH HOH . G 5 HOH A 71 674 674 HOH HOH . G 5 HOH A 72 675 675 HOH HOH . G 5 HOH A 73 676 676 HOH HOH . G 5 HOH A 74 677 677 HOH HOH . G 5 HOH A 75 678 678 HOH HOH . G 5 HOH A 76 679 679 HOH HOH . G 5 HOH A 77 680 680 HOH HOH . G 5 HOH A 78 681 681 HOH HOH . G 5 HOH A 79 682 682 HOH HOH . G 5 HOH A 80 683 683 HOH HOH . G 5 HOH A 81 684 684 HOH HOH . G 5 HOH A 82 685 685 HOH HOH . G 5 HOH A 83 686 686 HOH HOH . G 5 HOH A 84 687 687 HOH HOH . G 5 HOH A 85 688 688 HOH HOH . G 5 HOH A 86 689 689 HOH HOH . G 5 HOH A 87 690 690 HOH HOH . G 5 HOH A 88 691 691 HOH HOH . G 5 HOH A 89 692 692 HOH HOH . G 5 HOH A 90 693 693 HOH HOH . G 5 HOH A 91 694 694 HOH HOH . G 5 HOH A 92 695 695 HOH HOH . G 5 HOH A 93 696 696 HOH HOH . G 5 HOH A 94 697 697 HOH HOH . G 5 HOH A 95 698 698 HOH HOH . G 5 HOH A 96 699 699 HOH HOH . G 5 HOH A 97 700 700 HOH HOH . G 5 HOH A 98 701 701 HOH HOH . G 5 HOH A 99 702 702 HOH HOH . G 5 HOH A 100 703 703 HOH HOH . G 5 HOH A 101 704 704 HOH HOH . G 5 HOH A 102 705 705 HOH HOH . G 5 HOH A 103 706 706 HOH HOH . G 5 HOH A 104 707 707 HOH HOH . G 5 HOH A 105 708 708 HOH HOH . G 5 HOH A 106 710 710 HOH HOH . G 5 HOH A 107 712 712 HOH HOH . G 5 HOH A 108 713 713 HOH HOH . G 5 HOH A 109 714 714 HOH HOH . G 5 HOH A 110 715 715 HOH HOH . G 5 HOH A 111 716 716 HOH HOH . G 5 HOH A 112 717 717 HOH HOH . G 5 HOH A 113 718 718 HOH HOH . G 5 HOH A 114 719 719 HOH HOH . G 5 HOH A 115 720 720 HOH HOH . G 5 HOH A 116 721 721 HOH HOH . G 5 HOH A 117 722 722 HOH HOH . G 5 HOH A 118 723 723 HOH HOH . G 5 HOH A 119 724 724 HOH HOH . G 5 HOH A 120 725 725 HOH HOH . G 5 HOH A 121 726 726 HOH HOH . G 5 HOH A 122 727 727 HOH HOH . G 5 HOH A 123 728 728 HOH HOH . G 5 HOH A 124 730 730 HOH HOH . G 5 HOH A 125 731 731 HOH HOH . G 5 HOH A 126 732 732 HOH HOH . G 5 HOH A 127 733 733 HOH HOH . G 5 HOH A 128 734 734 HOH HOH . G 5 HOH A 129 736 736 HOH HOH . G 5 HOH A 130 737 737 HOH HOH . G 5 HOH A 131 738 738 HOH HOH . G 5 HOH A 132 739 739 HOH HOH . G 5 HOH A 133 740 740 HOH HOH . G 5 HOH A 134 741 741 HOH HOH . G 5 HOH A 135 742 742 HOH HOH . G 5 HOH A 136 743 743 HOH HOH . G 5 HOH A 137 744 744 HOH HOH . G 5 HOH A 138 745 745 HOH HOH . G 5 HOH A 139 746 746 HOH HOH . G 5 HOH A 140 747 747 HOH HOH . G 5 HOH A 141 748 748 HOH HOH . G 5 HOH A 142 749 749 HOH HOH . G 5 HOH A 143 750 750 HOH HOH . G 5 HOH A 144 751 751 HOH HOH . G 5 HOH A 145 752 752 HOH HOH . G 5 HOH A 146 900 900 HOH HOH . G 5 HOH A 147 901 901 HOH HOH . G 5 HOH A 148 902 902 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -5.762 _atom_site.Cartn_y 67.191 _atom_site.Cartn_z 40.08 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 5.31 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #