data_1BGP # _model_server_result.job_id tQXb1VUWpKP78ba8yK74Gg _model_server_result.datetime_utc '2024-12-26 14:07:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1bgp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 1BGP # _exptl.entry_id 1BGP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1BGP _cell.length_a 71.92 _cell.length_b 105.06 _cell.length_c 40.95 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1BGP _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 71.92 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 18 A CYS 18 1_555 A SG CYS 99 A CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 51 A CYS 51 1_555 A SG CYS 56 A CYS 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf3 A SG CYS 106 A CYS 106 1_555 A SG CYS 301 A CYS 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 A SG CYS 186 A CYS 186 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc1 A O ASP 50 A ASP 50 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.463 ? metalc ? metalc2 A OD1 ASP 50 A ASP 50 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.592 ? metalc ? metalc3 A O VAL 53 A VAL 53 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc4 A O GLY 55 A GLY 55 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc5 A OD1 ASP 57 A ASP 57 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc6 A OG SER 59 A SER 59 1_555 C NA NA . A NA 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc7 A NE2 HIS 179 A HIS 179 1_555 D FE HEM . A HEM 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc8 A O THR 180 A THR 180 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc9 A OG1 THR 180 A THR 180 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc10 A OD2 ASP 225 A ASP 225 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc11 A O THR 228 A THR 228 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc12 A OG1 THR 228 A THR 228 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc13 A O VAL 231 A VAL 231 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc14 A OD1 ASP 233 A ASP 233 1_555 B CA CA . A CA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.663 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1BGP _atom_sites.fract_transf_matrix[1][1] 0.013904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009518 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.02442 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 501 501 CA CA . C 3 NA A 1 502 502 NA NA . D 4 HEM A 1 400 400 HEM HEM . E 5 HOH A 1 600 600 HOH HOH . E 5 HOH A 2 601 601 HOH HOH . E 5 HOH A 3 602 602 HOH HOH . E 5 HOH A 4 603 603 HOH HOH . E 5 HOH A 5 604 604 HOH HOH . E 5 HOH A 6 605 605 HOH HOH . E 5 HOH A 7 606 606 HOH HOH . E 5 HOH A 8 607 607 HOH HOH . E 5 HOH A 9 608 608 HOH HOH . E 5 HOH A 10 609 609 HOH HOH . E 5 HOH A 11 610 610 HOH HOH . E 5 HOH A 12 611 611 HOH HOH . E 5 HOH A 13 613 613 HOH HOH . E 5 HOH A 14 614 614 HOH HOH . E 5 HOH A 15 615 615 HOH HOH . E 5 HOH A 16 616 616 HOH HOH . E 5 HOH A 17 617 617 HOH HOH . E 5 HOH A 18 618 618 HOH HOH . E 5 HOH A 19 619 619 HOH HOH . E 5 HOH A 20 620 620 HOH HOH . E 5 HOH A 21 621 621 HOH HOH . E 5 HOH A 22 622 622 HOH HOH . E 5 HOH A 23 623 623 HOH HOH . E 5 HOH A 24 624 624 HOH HOH . E 5 HOH A 25 625 625 HOH HOH . E 5 HOH A 26 626 626 HOH HOH . E 5 HOH A 27 627 627 HOH HOH . E 5 HOH A 28 628 628 HOH HOH . E 5 HOH A 29 630 630 HOH HOH . E 5 HOH A 30 631 631 HOH HOH . E 5 HOH A 31 632 632 HOH HOH . E 5 HOH A 32 633 633 HOH HOH . E 5 HOH A 33 634 634 HOH HOH . E 5 HOH A 34 635 635 HOH HOH . E 5 HOH A 35 636 636 HOH HOH . E 5 HOH A 36 637 637 HOH HOH . E 5 HOH A 37 638 638 HOH HOH . E 5 HOH A 38 639 639 HOH HOH . E 5 HOH A 39 640 640 HOH HOH . E 5 HOH A 40 641 641 HOH HOH . E 5 HOH A 41 642 642 HOH HOH . E 5 HOH A 42 643 643 HOH HOH . E 5 HOH A 43 644 644 HOH HOH . E 5 HOH A 44 645 645 HOH HOH . E 5 HOH A 45 646 646 HOH HOH . E 5 HOH A 46 647 647 HOH HOH . E 5 HOH A 47 648 648 HOH HOH . E 5 HOH A 48 649 649 HOH HOH . E 5 HOH A 49 650 650 HOH HOH . E 5 HOH A 50 651 651 HOH HOH . E 5 HOH A 51 652 652 HOH HOH . E 5 HOH A 52 653 653 HOH HOH . E 5 HOH A 53 654 654 HOH HOH . E 5 HOH A 54 655 655 HOH HOH . E 5 HOH A 55 656 656 HOH HOH . E 5 HOH A 56 657 657 HOH HOH . E 5 HOH A 57 658 658 HOH HOH . E 5 HOH A 58 660 660 HOH HOH . E 5 HOH A 59 661 661 HOH HOH . E 5 HOH A 60 662 662 HOH HOH . E 5 HOH A 61 663 663 HOH HOH . E 5 HOH A 62 664 664 HOH HOH . E 5 HOH A 63 665 665 HOH HOH . E 5 HOH A 64 666 666 HOH HOH . E 5 HOH A 65 667 667 HOH HOH . E 5 HOH A 66 668 668 HOH HOH . E 5 HOH A 67 669 669 HOH HOH . E 5 HOH A 68 670 670 HOH HOH . E 5 HOH A 69 671 671 HOH HOH . E 5 HOH A 70 672 672 HOH HOH . E 5 HOH A 71 673 673 HOH HOH . E 5 HOH A 72 674 674 HOH HOH . E 5 HOH A 73 675 675 HOH HOH . E 5 HOH A 74 676 676 HOH HOH . E 5 HOH A 75 677 677 HOH HOH . E 5 HOH A 76 678 678 HOH HOH . E 5 HOH A 77 679 679 HOH HOH . E 5 HOH A 78 680 680 HOH HOH . E 5 HOH A 79 682 682 HOH HOH . E 5 HOH A 80 683 683 HOH HOH . E 5 HOH A 81 684 684 HOH HOH . E 5 HOH A 82 685 685 HOH HOH . E 5 HOH A 83 686 686 HOH HOH . E 5 HOH A 84 687 687 HOH HOH . E 5 HOH A 85 689 689 HOH HOH . E 5 HOH A 86 690 690 HOH HOH . E 5 HOH A 87 693 693 HOH HOH . E 5 HOH A 88 694 694 HOH HOH . E 5 HOH A 89 695 695 HOH HOH . E 5 HOH A 90 696 696 HOH HOH . E 5 HOH A 91 697 697 HOH HOH . E 5 HOH A 92 698 698 HOH HOH . E 5 HOH A 93 700 700 HOH HOH . E 5 HOH A 94 701 701 HOH HOH . E 5 HOH A 95 702 702 HOH HOH . E 5 HOH A 96 704 704 HOH HOH . E 5 HOH A 97 705 705 HOH HOH . E 5 HOH A 98 706 706 HOH HOH . E 5 HOH A 99 707 707 HOH HOH . E 5 HOH A 100 708 708 HOH HOH . E 5 HOH A 101 709 709 HOH HOH . E 5 HOH A 102 710 710 HOH HOH . E 5 HOH A 103 711 711 HOH HOH . E 5 HOH A 104 712 712 HOH HOH . E 5 HOH A 105 713 713 HOH HOH . E 5 HOH A 106 714 714 HOH HOH . E 5 HOH A 107 715 715 HOH HOH . E 5 HOH A 108 716 716 HOH HOH . E 5 HOH A 109 717 717 HOH HOH . E 5 HOH A 110 718 718 HOH HOH . E 5 HOH A 111 719 719 HOH HOH . E 5 HOH A 112 721 721 HOH HOH . E 5 HOH A 113 722 722 HOH HOH . E 5 HOH A 114 723 723 HOH HOH . E 5 HOH A 115 724 724 HOH HOH . E 5 HOH A 116 725 725 HOH HOH . E 5 HOH A 117 726 726 HOH HOH . E 5 HOH A 118 727 727 HOH HOH . E 5 HOH A 119 728 728 HOH HOH . E 5 HOH A 120 729 729 HOH HOH . E 5 HOH A 121 730 730 HOH HOH . E 5 HOH A 122 731 731 HOH HOH . E 5 HOH A 123 732 732 HOH HOH . E 5 HOH A 124 733 733 HOH HOH . E 5 HOH A 125 734 734 HOH HOH . E 5 HOH A 126 735 735 HOH HOH . E 5 HOH A 127 736 736 HOH HOH . E 5 HOH A 128 737 737 HOH HOH . E 5 HOH A 129 738 738 HOH HOH . E 5 HOH A 130 740 740 HOH HOH . E 5 HOH A 131 741 741 HOH HOH . E 5 HOH A 132 742 742 HOH HOH . E 5 HOH A 133 743 743 HOH HOH . E 5 HOH A 134 744 744 HOH HOH . E 5 HOH A 135 745 745 HOH HOH . E 5 HOH A 136 748 748 HOH HOH . E 5 HOH A 137 750 750 HOH HOH . E 5 HOH A 138 751 751 HOH HOH . E 5 HOH A 139 752 752 HOH HOH . E 5 HOH A 140 753 753 HOH HOH . E 5 HOH A 141 754 754 HOH HOH . E 5 HOH A 142 755 755 HOH HOH . E 5 HOH A 143 756 756 HOH HOH . E 5 HOH A 144 757 757 HOH HOH . E 5 HOH A 145 758 758 HOH HOH . E 5 HOH A 146 759 759 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 22.268 _atom_site.Cartn_y 2.698 _atom_site.Cartn_z 15.005 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 15.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 502 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 29 _model_server_stats.query_time_ms 351 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #