data_1BGY
#
_model_server_result.job_id            1_J1NauXHAgzIpeJPc0lAQ 
_model_server_result.datetime_utc      '2024-11-05 21:00:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1bgy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"BA","auth_seq_id":242}' 
#
_entry.id    1BGY 
#
_exptl.entry_id    1BGY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              618.503 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'HEME C' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1BGY 
_cell.length_a            130.11 
_cell.length_b            130.11 
_cell.length_c            720.94 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1BGY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    22-meric 
_pdbx_struct_assembly.oligomeric_count      22 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 Y N N 
? 13 BA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 H SG CYS 24 H CYS 24 1_555 H SG CYS 68 H CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
disulf ? disulf2 H SG CYS 40 H CYS 40 1_555 H SG CYS 54 H CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 P SG CYS 144 Q CYS 144 1_555 P SG CYS 160 Q CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf4 S SG CYS 24 T CYS 24 1_555 S SG CYS 68 T CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? 
disulf ? disulf5 S SG CYS 40 T CYS 40 1_555 S SG CYS 54 T CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
covale ? covale1 D SG CYS 37 D CYS 37 1_555 Y CAB HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.843 ? 
covale ? covale2 D SG CYS 40 D CYS 40 1_555 Y CAC HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? 
covale ? covale3 O SG CYS 37 P CYS 37 1_555 BA CAB HEC . P HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.867 ? 
covale ? covale4 O SG CYS 40 P CYS 40 1_555 BA CAC HEC . P HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.856 ? 
metalc ? metalc1 C NE2 HIS 83 C HIS 83 1_555 W FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.052 ? 
metalc ? metalc2 C NE2 HIS 97 C HIS 97 1_555 X FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
metalc ? metalc3 C NE2 HIS 182 C HIS 182 1_555 W FE HEM . C HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc4 C NE2 HIS 196 C HIS 196 1_555 X FE HEM . C HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc5 D NE2 HIS 41 D HIS 41 1_555 Y FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.919 ? 
metalc ? metalc6 D SD MET 160 D MET 160 1_555 Y FE HEC . D HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.359 ? 
metalc ? metalc7 N NE2 HIS 83 O HIS 83 1_555 Z FE HEM . O HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? 
metalc ? metalc8 N NE2 HIS 97 O HIS 97 1_555 AA FE HEM . O HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? 
metalc ? metalc9 N NE2 HIS 182 O HIS 182 1_555 Z FE HEM . O HEM 380 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
metalc ? metalc10 N NE2 HIS 196 O HIS 196 1_555 AA FE HEM . O HEM 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? 
metalc ? metalc11 O NE2 HIS 41 P HIS 41 1_555 BA FE HEC . P HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.961 ? 
metalc ? metalc12 O SD MET 160 P MET 160 1_555 BA FE HEC . P HEC 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? 
metalc ? metalc13 P SG CYS 139 Q CYS 139 1_555 CA FE1 FES . Q FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.287 ? 
metalc ? metalc14 P ND1 HIS 141 Q HIS 141 1_555 CA FE2 FES . Q FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.165 ? 
metalc ? metalc15 P SG CYS 158 Q CYS 158 1_555 CA FE1 FES . Q FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.181 ? 
metalc ? metalc16 P ND1 HIS 161 Q HIS 161 1_555 CA FE2 FES . Q FES 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.139 ? 
#
_chem_comp.formula           'C34 H34 Fe N4 O4' 
_chem_comp.formula_weight    618.503 
_chem_comp.id                HEC 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'HEME C' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE NA HEC sing 133 n n 
FE NB HEC sing 134 n n 
FE NC HEC sing 135 n n 
FE ND HEC sing 136 n n 
CHA C1A HEC doub 137 n n 
CHA C4D HEC sing 138 n n 
CHA HHA HEC sing 139 n n 
CHB C4A HEC doub 140 n n 
CHB C1B HEC sing 141 n n 
CHB HHB HEC sing 142 n n 
CHC C4B HEC doub 143 n n 
CHC C1C HEC sing 144 n n 
CHC HHC HEC sing 145 n n 
CHD C4C HEC doub 146 n n 
CHD C1D HEC sing 147 n n 
CHD HHD HEC sing 148 n n 
NA C1A HEC sing 149 n y 
NA C4A HEC sing 150 n y 
C1A C2A HEC sing 151 n y 
C2A C3A HEC doub 152 n y 
C2A CAA HEC sing 153 n n 
C3A C4A HEC sing 154 n y 
C3A CMA HEC sing 155 n n 
CMA HMA1 HEC sing 156 n n 
CMA HMA2 HEC sing 157 n n 
CMA HMA3 HEC sing 158 n n 
CAA CBA HEC sing 159 n n 
CAA HAA1 HEC sing 160 n n 
CAA HAA2 HEC sing 161 n n 
CBA CGA HEC sing 162 n n 
CBA HBA1 HEC sing 163 n n 
CBA HBA2 HEC sing 164 n n 
CGA O1A HEC doub 165 n n 
CGA O2A HEC sing 166 n n 
O2A H2A HEC sing 167 n n 
NB C1B HEC sing 168 n y 
NB C4B HEC sing 169 n y 
C1B C2B HEC doub 170 n y 
C2B C3B HEC sing 171 n y 
C2B CMB HEC sing 172 n n 
C3B C4B HEC sing 173 n y 
C3B CAB HEC doub 174 e n 
CMB HMB1 HEC sing 175 n n 
CMB HMB2 HEC sing 176 n n 
CMB HMB3 HEC sing 177 n n 
CAB CBB HEC sing 178 n n 
CAB HAB HEC sing 179 n n 
CBB HBB1 HEC sing 180 n n 
CBB HBB2 HEC sing 181 n n 
CBB HBB3 HEC sing 182 n n 
NC C1C HEC sing 183 n y 
NC C4C HEC sing 184 n y 
C1C C2C HEC doub 185 n y 
C2C C3C HEC sing 186 n y 
C2C CMC HEC sing 187 n n 
C3C C4C HEC sing 188 n y 
C3C CAC HEC doub 189 e n 
CMC HMC1 HEC sing 190 n n 
CMC HMC2 HEC sing 191 n n 
CMC HMC3 HEC sing 192 n n 
CAC CBC HEC sing 193 n n 
CAC HAC HEC sing 194 n n 
CBC HBC1 HEC sing 195 n n 
CBC HBC2 HEC sing 196 n n 
CBC HBC3 HEC sing 197 n n 
ND C1D HEC sing 198 n y 
ND C4D HEC sing 199 n y 
C1D C2D HEC doub 200 n y 
C2D C3D HEC sing 201 n y 
C2D CMD HEC sing 202 n n 
C3D C4D HEC doub 203 n y 
C3D CAD HEC sing 204 n n 
CMD HMD1 HEC sing 205 n n 
CMD HMD2 HEC sing 206 n n 
CMD HMD3 HEC sing 207 n n 
CAD CBD HEC sing 208 n n 
CAD HAD1 HEC sing 209 n n 
CAD HAD2 HEC sing 210 n n 
CBD CGD HEC sing 211 n n 
CBD HBD1 HEC sing 212 n n 
CBD HBD2 HEC sing 213 n n 
CGD O1D HEC doub 214 n n 
CGD O2D HEC sing 215 n n 
O2D H2D HEC sing 216 n n 
#
_atom_sites.entry_id                     1BGY 
_atom_sites.fract_transf_matrix[1][1]    0.007686 
_atom_sites.fract_transf_matrix[1][2]    0.004437 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008875 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.001387 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
W 12 HEM C 1 380 1 HEM HEM . 
X 12 HEM C 1 381 2 HEM HEM . 
Y 13 HEC D 1 242 3 HEC HEC . 
Z 12 HEM O 1 380 1 HEM HEM . 
AA 12 HEM O 1 381 2 HEM HEM . 
BA 13 HEC P 1 242 3 HEC HEC . 
CA 14 FES Q 1 197 4 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE HEC . . . BA 13 77.386 91.207 31.741 1 33.03 ? FE HEC 242 P 1 
HETATM 2 C CHA HEC . . . BA 13 76.899 93.847 29.676 1 35.38 ? CHA HEC 242 P 1 
HETATM 3 C CHB HEC . . . BA 13 75.671 89.191 29.654 1 33.99 ? CHB HEC 242 P 1 
HETATM 4 C CHC HEC . . . BA 13 78.406 88.526 33.557 1 33.67 ? CHC HEC 242 P 1 
HETATM 5 C CHD HEC . . . BA 13 78.703 93.319 34.092 1 37.6 ? CHD HEC 242 P 1 
HETATM 6 N NA HEC . . . BA 13 76.375 91.498 30.059 1 34.38 ? NA HEC 242 P 1 
HETATM 7 C C1A HEC . . . BA 13 76.475 92.617 29.249 1 34.94 ? C1A HEC 242 P 1 
HETATM 8 C C2A HEC . . . BA 13 76.054 92.268 27.913 1 36.88 ? C2A HEC 242 P 1 
HETATM 9 C C3A HEC . . . BA 13 75.692 90.987 27.919 1 37.83 ? C3A HEC 242 P 1 
HETATM 10 C C4A HEC . . . BA 13 75.898 90.481 29.256 1 36.65 ? C4A HEC 242 P 1 
HETATM 11 C CMA HEC . . . BA 13 75.179 90.086 26.781 1 41.86 ? CMA HEC 242 P 1 
HETATM 12 C CAA HEC . . . BA 13 76.071 93.248 26.729 1 33.2 ? CAA HEC 242 P 1 
HETATM 13 C CBA HEC . . . BA 13 74.768 93.445 25.976 1 29.46 ? CBA HEC 242 P 1 
HETATM 14 C CGA HEC . . . BA 13 74.628 94.817 25.372 1 28.63 ? CGA HEC 242 P 1 
HETATM 15 O O1A HEC . . . BA 13 74.403 95.76 26.166 1 25.69 ? O1A HEC 242 P 1 
HETATM 16 O O2A HEC . . . BA 13 74.751 94.892 24.131 1 26.71 ? O2A HEC 242 P 1 
HETATM 17 N NB HEC . . . BA 13 77.131 89.244 31.6 1 31.47 ? NB HEC 242 P 1 
HETATM 18 C C1B HEC . . . BA 13 76.334 88.589 30.691 1 31.43 ? C1B HEC 242 P 1 
HETATM 19 C C2B HEC . . . BA 13 76.293 87.184 31.028 1 33.01 ? C2B HEC 242 P 1 
HETATM 20 C C3B HEC . . . BA 13 77.036 87.002 32.118 1 31.82 ? C3B HEC 242 P 1 
HETATM 21 C C4B HEC . . . BA 13 77.581 88.284 32.489 1 31.67 ? C4B HEC 242 P 1 
HETATM 22 C CMB HEC . . . BA 13 75.508 86.119 30.232 1 34.3 ? CMB HEC 242 P 1 
HETATM 23 C CAB HEC . . . BA 13 77.343 85.672 32.876 1 30.59 ? CAB HEC 242 P 1 
HETATM 24 C CBB HEC . . . BA 13 78.229 84.86 32.236 1 25.35 ? CBB HEC 242 P 1 
HETATM 25 N NC HEC . . . BA 13 78.412 90.959 33.447 1 35.34 ? NC HEC 242 P 1 
HETATM 26 C C1C HEC . . . BA 13 78.651 89.766 34.102 1 36.07 ? C1C HEC 242 P 1 
HETATM 27 C C2C HEC . . . BA 13 79.187 90.04 35.417 1 36.6 ? C2C HEC 242 P 1 
HETATM 28 C C3C HEC . . . BA 13 79.282 91.36 35.53 1 37.17 ? C3C HEC 242 P 1 
HETATM 29 C C4C HEC . . . BA 13 78.791 91.962 34.317 1 36.69 ? C4C HEC 242 P 1 
HETATM 30 C CMC HEC . . . BA 13 79.587 88.981 36.464 1 36.72 ? CMC HEC 242 P 1 
HETATM 31 C CAC HEC . . . BA 13 79.739 92.214 36.747 1 37.32 ? CAC HEC 242 P 1 
HETATM 32 C CBC HEC . . . BA 13 80.486 93.302 36.441 1 36.52 ? CBC HEC 242 P 1 
HETATM 33 N ND HEC . . . BA 13 77.735 93.19 31.865 1 37.03 ? ND HEC 242 P 1 
HETATM 34 C C1D HEC . . . BA 13 78.238 93.896 32.936 1 36.89 ? C1D HEC 242 P 1 
HETATM 35 C C2D HEC . . . BA 13 78.189 95.312 32.648 1 38.14 ? C2D HEC 242 P 1 
HETATM 36 C C3D HEC . . . BA 13 77.697 95.46 31.422 1 38.55 ? C3D HEC 242 P 1 
HETATM 37 C C4D HEC . . . BA 13 77.403 94.134 30.917 1 37.39 ? C4D HEC 242 P 1 
HETATM 38 C CMD HEC . . . BA 13 78.661 96.391 33.643 1 40.57 ? CMD HEC 242 P 1 
HETATM 39 C CAD HEC . . . BA 13 77.452 96.733 30.579 1 38.74 ? CAD HEC 242 P 1 
HETATM 40 C CBD HEC . . . BA 13 78.243 96.893 29.294 1 39.03 ? CBD HEC 242 P 1 
HETATM 41 C CGD HEC . . . BA 13 78.366 98.254 28.69 1 41.61 ? CGD HEC 242 P 1 
HETATM 42 O O1D HEC . . . BA 13 79.386 98.417 27.974 1 44.25 ? O1D HEC 242 P 1 
HETATM 43 O O2D HEC . . . BA 13 77.474 99.102 28.924 1 46.5 ? O2D HEC 242 P 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    56 
_model_server_stats.query_time_ms           336 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           43 
#